Array 1 1185817-1185256 **** Predicted by CRISPRDetect 2.4 *** >NC_009073.1 Pyrobaculum calidifontis JCM 11548, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 1185816 24 100.0 38 ........................ CAGATAATGCGGAAGCCAGCTCTGGAGAGAGCGCTGGC 1185754 24 100.0 46 ........................ TTCTCGAACTGGTCCAACCACGGAGACCAGACCTTCGTCAACTGGT 1185684 24 100.0 43 ........................ CGACCCCGGCCCCCGTCGTACCCCCACTCCCGGGCGGGGCGAG 1185617 24 100.0 46 ........................ TTTACATAGTTTAACAACGGCGTAAATTCGCCCCTTTACAAATAGA 1185547 24 100.0 39 ........................ CTCTTAATGCGTAGGTTTCATATGCGGACACGTTAGTAT 1185484 24 100.0 42 ........................ CATATCTTTTCATACCCGCGGCCTCCCATATCCTAATTACCC 1185418 24 100.0 47 ........................ CTATGCCCCCACCTAAAATGAACCCAATCGCGAGACCCACGGCGAAG 1185347 24 95.8 44 .......................T GAATTCGACGTGTCGCAGGCCGCCTTCACTGCGACAGAGTGCGC 1185279 24 75.0 0 ...C...T.A.....AT......A | ========== ====== ====== ====== ======================== =============================================== ================== 9 24 96.8 43 GAATCTCAAGAAGAGGATTGAAAG # Left flank : GCCTTCAACGTGGGCACAGGCCGCGGCATGGGCCTAGGCGTAGTCCGCGCCACCCCCCTCCCCTGCCCCGGCGAAACAGCCAAAGACGGCGGCCAGCGGTAGGCCACACGACAAGCCCCTAGAACAGTCCACGCCGACAACCCGCAAAACGCGGCAACCCAGTGCTCTAACATCTATATAACTCATGACGTATCTATATACATTTCGGCGTTTTTAAAACGTCGTGCAACTTGCCCTTTATCTTTGTCTATATTTCAGCTCTCTTCGCCGTTCGGCATTTATATATCGCGGGGATCCAATTTAAAAAACGTCGTGCAGGAGAAAAGCGTACACCGGCGCCGAAAATCAAAAACGCACCTTCAACTATGCCACAATTGAAAGAGGCGGCAAACAAACCACTATACTAATAATAGATCAAGACATCAATGGCCCCGTACGACTCCCAGAAATCGCCAAAGAAAAACTTAAAAACTGCCAGAAACAAAAACCCAGGAAGCCCA # Right flank : GATATGTAATCACAACGGGACACGACTGGGTACAATATGTAAAAATTCTGGCAGAAAGTTGAGGGATAGAAGCACTTGCTGTGAGGGGCTTAGTGAAGGTGTTAAGTCCCCTGGGTGTTATATTGTGTCTACTTGTGTCTGGGTGTGGCCGCAGTATTTTTTGTACCAGCAGCCTTGGCATTTGGGGGTGGGCTGGGGGTGTGGGGTCCAGCCTTTTAGTATTTTGGCTACTTGGGCGGCGGTTTGGAGGACGAGGTGGGTTAGGTCTTGGGTGAGTTGTACTGTCCTTACCTCTCCGGCCTCGGCGTAGTATATGTAGGCGTGTGTTGCGGCTTTGCGGTAGGTGGCTTGGGCGGCGAGGGCGTAGGCGGCGGCCTGCGCTTTGTGGGGTAGTGGGGTTTTGGGGGGTGGGGTGGTGTACTTCACTTCGAGGGGGGCTGGCCTGCCGCGTATCCAGAGGACGGCGTCTACTACGCCGCATATTCCCCAGCCCTCTAGGC # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAGAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 1190532-1188156 **** Predicted by CRISPRDetect 2.4 *** >NC_009073.1 Pyrobaculum calidifontis JCM 11548, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 1190531 24 100.0 42 ........................ AGCTTTTTGCACAGGGCCTTAAGCACTGTGGCCACCTTCACC 1190465 24 100.0 42 ........................ GCCTGCCGATATGGGCGTACTCGCTTGGCTTTTCAATAAGCG 1190399 24 100.0 44 ........................ GTATACAGCTATATGTCGTGTTGAAAGCCGTTGACTATTTTGTC 1190331 24 100.0 44 ........................ TCGTTTATAGTGCGTTCATCATAGCCTTCTGCAAACAGGCACCT 1190263 24 100.0 49 ........................ CATTTACGCATATGTGACACTGTTTCAAGTGGTGGTTAACCCGTGGCTG 1190190 24 100.0 43 ........................ TCACAGTTAAGGCGGATATTCGAGGAGCCATGTCCACAGTAAT 1190123 24 100.0 41 ........................ CGGTCTGGCTATAGATGTCGCACTCGCCGCCGTGGGCCTCG 1190058 24 100.0 43 ........................ TTGCACTTGTCTCTTGCCAATCGAGATTTGGTAGACAAGCGCC 1189991 24 100.0 41 ........................ ACGCGTCCATAAGCGAGACCGTGTCTGTGGCCCTCGCCCGC 1189926 24 100.0 41 ........................ GCTAGTCAACGCTCTGGCCCCCCACGTGGGTTTCGACGTGG 1189861 24 100.0 43 ........................ ACTACATATTTTGCGCGCCCATGCGGCCCACATGCACGGCGCG 1189794 24 100.0 43 ........................ CACTTAGCCAGGCCTGGGGCAAGTGCACATAGAGGCTGTGTAG 1189727 24 100.0 44 ........................ TCGAGGGCGAGGTGGTGCCTGGCACCGCCTACGTCAAGCTGGTA 1189659 24 100.0 42 ........................ CAGCACCACGGGGCCACGCGCCACGTATCGGTAGGTGGGGGG 1189593 24 100.0 44 ........................ GCTGTGGCTAGTGGCGAAGTGTTGCAAGGAGGGTCGCTTTAGGA 1189525 24 100.0 41 ........................ ATACTATGCCGCTATGATTGAGTATAACGGCGGTAGATTTG 1189460 24 100.0 42 ........................ GGCGTATTGAGGAGCTGGCGCCCCGCCACGTGGACTTGAGAG 1189394 24 100.0 39 ........................ CCACGAGACCCCTAAGCGCCAGGACAGAGAAGGTGGAGG 1189331 24 100.0 42 ........................ TCTACTGGTGCAAAAATGGAATTAATCGCTGTGCATTTACCA 1189265 24 100.0 43 ........................ GCGCTTTCCCGCGCGCGCCTAGGCGCGCGGGCATTGTTTGTGG 1189198 24 100.0 41 ........................ CTTCTCCAACAACGACGTTGTCCTGGCGACGACGGGGGACG 1189133 24 100.0 44 ........................ TTAGCAAGAACGTGCGCGCCCCCTCTAGCGCTTTACGTGCGCTC 1189065 24 100.0 48 ........................ ACAATGCACCCCACATCAGTGCACAGTAGGCGCACTTTGCCCCTATAG 1188993 24 100.0 43 ........................ TTCCTACTGTGGTCGCATCCACGTGTCTTCTTGTCATAAAGCA 1188926 24 100.0 41 ........................ AACAACGACGTGAAAATGATATCCGTAAGCGTGGACTCCCA 1188861 24 100.0 45 ........................ CGGAAGGTGAGGAGGTGGGTGTACAAGGCCGCCGCCGACCTGGCG 1188792 24 100.0 44 ........................ TTAAGAAGCTGTGGGACATATACACCCCCACCGAGTCTCTAGAT 1188724 24 100.0 42 ........................ CGCCGTTGTCACACCCACTGGAGGGGCCGTTGACTGTCACGA 1188658 24 100.0 47 ........................ TTAGTCTCTCGTACTCGCCAGTCATAGCACCTCCACCTCCACCCACC 1188587 24 100.0 46 ........................ ATACCAAAGGCTTAAGGAGGGGGTTAAGGGGAAACAGCTACCTACA 1188517 24 100.0 44 ........................ CTAACGCCTCGGCGTGGTTATCATAACCATGCACCACGTGGCCA 1188449 24 100.0 43 ........................ CTCATAGTATGTATCTACCGTATAGCCCCGCTTCCTATAGTGA 1188382 24 100.0 41 ........................ CTGAGTATCTCTCTCCAGGGCACCATCGAGAGGAAGGGTAG 1188317 24 100.0 45 ........................ CCACCGACGGTATTATATCCTCAACGTCGAAGCCGTACTTGGCAA 1188248 24 100.0 45 ........................ GACGTAATCACGGCAAACCCCTTACCAGTCACCGTATCTAATACC 1188179 24 83.3 0 .......T..G..T.....A.... | ========== ====== ====== ====== ======================== ================================================= ================== 36 24 99.5 43 GAATCTCAAGAAGAGGATTGAAAG # Left flank : CAGCCCAGGCCCCACTAGAAACGCAAAGGTGGGCCCTCAAGCCGCTCCACACGCGCCAGCTATGAAAGAAGCGACAAGCCACCGCGGCAACCCACCGGCGCCCAGGGTACCCTACTTCGCTTGGAATCCTCAAAAGGGACAACAGCCCCATTGTCTTAGAAAACCACTAGCCCGTCCTAGGCAACATATGAAACCTATATAGATGTCGGCGCTTTTAAATCGTCGTACAACTCTCCCTTGGCCTTTGTCTATATTTCAGCTCTCTTCGCCGTTCGGCATTTATATATCGTGGAGATCCAATTTAAAAAACGTCGTGCAGGAGAAAAGCGTACACCGGCGCCGAGGTGCAAAAACACGCCATCAACTATGCCACAGTTGAAAGAAGTAGCGTACAAGCCGTAAGGCTCCAATTAAACAAGCTCAAAAACACGTCACACGCTCTCTGAAATACACCAAAGAAAAACTTAAAAACCGCCAGAAACAAAAACCCAGGAAGCCCA # Right flank : GCCAAGCGTTCTTCTTAGCTTTTGTTCATAGTGCTGTTTTGCACCATGTGGCTTCGTTGTCTTGGCAGTGGTAGCTATAGCTTAAATTCAATGAACTTTGTTTGATGTATGTTGGTTTTCTTTGTCGCCATCTTTCTCTTGGCCTTTGCGGCGGGTTTTACAGTGGCGTGGATTCTCCAGTCGGCGCTTAAGGCGGCGGCGTATTTGACGGCGTTGTTTGCCCTCGCCGTTGTGGCGGCGTTCGTCGTGTGGAGGCATCCCCTCATGTCGTGGGCCATCGCGGTCTCGGCCGCGGCGCTCTACGCAATGGCCATGGCGGGAGTCGCCGCGTGGTGGCTTTGGCACAATCGGCCCAGGTAGCCGCCGGTGGGGCCTCGTCAAGGACTACGCGAGTTTGTGCGGCCGTTGGGCGGGCGAGGGCGTCGAACACGCAGTAGCATACGACAGGTCAGTGGGCAACAGCCGGAAGCTATCATGCGTGGGGAGGTCGCGCCCATCGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAGAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 1203351-1205855 **** Predicted by CRISPRDetect 2.4 *** >NC_009073.1 Pyrobaculum calidifontis JCM 11548, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 1203351 24 100.0 41 ........................ GTTGTACGCCGCCGAGCGGGAGCGACGCGGTGGTTTGGTTT 1203416 24 100.0 46 ........................ TCCTCTTGGATCAACTACCACCGTTACCACTACGACTCAGGTGCGA 1203486 24 100.0 41 ........................ ACTGTCAGCGATCCAGCTCCACCACCCGCTCCGGAGGACAC 1203551 24 100.0 43 ........................ CTCTATACGCCGTCGCCAGGATAAGCTCATTGCTTACAACAGT 1203618 24 100.0 43 ........................ TCCAAAACCTAGACGCCCTCCTCCAGTCACCGTCGGGACTTTG 1203685 24 100.0 45 ........................ AATCACTCCGGACCCGCTATTAATCGTGGCGGGGTTCAACCGTCA 1203754 24 100.0 49 ........................ ATATATTGAATCAATAAGGTCCGACGACACCCGTTCAAGCAGGGACCCG 1203827 24 100.0 45 ........................ TGACCTCTGGGGTCTCCTCCTCTTTATCAACGTAGACCCTTTTGT 1203896 24 100.0 39 ........................ ACTCTATGCGGCCCACGAATTCCTCAGACTCAAGCGTAG 1203959 24 100.0 44 ........................ GCCCTCACCGTGTTGATATTGACGCTCGCATACATATTCATTGT 1204027 24 100.0 45 ........................ ACAGACCTCTTGAGGAGGTTCGAGGGGTCGCAGGTGTCCCTCGCC 1204096 24 100.0 45 ........................ ATTGGCGTTGGCGTCCCGGTGAAAATACTGCGCCACGATGGGAGG 1204165 24 100.0 42 ........................ ATAGTACTTGCCAGAGCCTAACACGACTATAGTGTTCCATAT 1204231 24 100.0 39 ........................ CATTTTTGCGGCGGCGAGCTCCTCGCCGAATAGCAAGCG 1204294 24 100.0 43 ........................ TCTGGCGCACCAATCTCGTACACGTCCCCCACCTCATCTACGA 1204361 24 100.0 45 ........................ TTGGGCGCCTTTACCACGGGGGCCGCATTTATGATTACTATAGAT 1204430 24 100.0 44 ........................ TTTCCAGTGTGAAAAAATATCGGTTACTACAGTGTGAATTATGC 1204498 24 100.0 39 ........................ CCGCACCCGCGATAGGCACTAACCACTTCATGATGCTAT 1204561 24 100.0 44 ........................ TCCTCGCCACCTGCCTGACGACGAGGGCGCACTCCTCCGCAGCG 1204629 24 100.0 44 ........................ TAGCTTTGGTAGCGGCAGTGTGAAGTGCCCCTCTGGGCCATCAA 1204697 24 100.0 43 ........................ ATTTCAAAGCCACGTTTGGGTAAAACTGTATAACTCTGTCCAA 1204764 24 100.0 40 ........................ CTCCTGGCGCAGATGTTATTGCATTTGGCAGAGATGTGCG 1204828 24 100.0 42 ........................ TATTGCTCCCTCAGCTCCCTAGCCAGCCTCTGCGCCCTGTCA 1204894 24 100.0 45 ........................ AGTCCACCAGCACCGCGGTGGGCGCACGCGCGTGCGCAAGGGCCG 1204963 24 100.0 44 ........................ TCTTTTTTGGGGGGCGTTCCTGCGCCCCCTAAACCCCCTTTGCC 1205031 24 100.0 40 ........................ CCTACGTGGCCAATCTCGTGGCCGACCAGCTTCTCAGTCG 1205095 24 100.0 41 ........................ CAGGCTGGCACAGAGTGGGGACCTGCCCCTCGTCCTCCTAC 1205160 24 100.0 43 ........................ TTATTACCGTGCGCCTTATTTTGCCAATAGTGTCTTCCTCCTC 1205227 24 100.0 44 ........................ TACGTATTTGGGCCCACACGTCTTGTGTAATCGCACGAGACCAC 1205295 24 100.0 43 ........................ CACTTTGGGCATGGGTCGCTGTGGTGCAACAGCTTTCCTCTAC 1205362 24 100.0 43 ........................ TCGCCCGCAACGCCAACAGGCGGGTCTGCAGGCATTCGGCCCT 1205429 24 100.0 40 ........................ TCGCGGAGAGGAATATCGTGTATAACTACGGAGAGACGCG 1205493 24 100.0 44 ........................ ATGTAGCGCGCCAGTATTCCGATTATATAGCCAGCCACGTATTG 1205561 24 100.0 45 ........................ TGTATGAATCCCACTATCGCATCGCTAATAGACTTAAACTCAGCC 1205630 24 100.0 39 ........................ CAGACCGTGAGGCCGCCCCCACCGGTTAAAGGTGTTATG 1205693 24 100.0 44 ........................ CTTTATCTCGCTCTCCCCTTTTTGCTCTACTACGTTACCCATGG 1205761 24 95.8 47 ..............T......... CATGGGAGACGTAAACGCCGTTGTGTCCAACGTCTATGCAGTAAACG 1205832 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================= ================== 38 24 99.9 43 GAATCTCAAGAAGAGGATTGAAAG # Left flank : TGCATCCAAGCCGCCGAGACAGCGGAAGGCCGCCGCCCAGAGAAATAGGCTCCGCCCCTCAGGCTCTATTCCTCACGCTGGAGACGAGGGTTGCGCGAGTATGCCACCGCGTCTAACGGCTTGTGGCATAGTAAAGAAGCAACGAGGGAAGAAGACGTGAGAGAAGCCCTAAGACGCATTTTACAACAATAGACTACATAGACGTCGGCGTTTTTAAAACGTCGTGCAACTCTCCCTTGGCATTTGTCAATATTTCAGCTCTCCCCGCCGTACGGCGTTTATATATCGTGGAGATCCAATTTAAAAAACGTCGTGCAGGAGAAAAGCGTACACCGGCGCCGAGAGTTGAAGATACGCCTTCAACTATTCCACAGTTGAAAGAGGTGGCAGACAAGCCGTAAGGGATCAATTCTAGTAAACTCAAAAGCACGCCGCACACCCTCTAAAAGACACCAAAGAAAAACTTAAAAACTAACAAAAACAAATGCCCAAGAAACCCA # Right flank : GGTCTGTAGACCACGTAAAGAAGATAGATGTGCTGGTGGGGTTGGGGTGGGTCTGGTGGGGTTTTTGAGGGGCCTGTGAGTTTTCGTTTTTGTTTGTGGAGGGGGCTTTGTGGGGTGATGGGGTGGCGCCGCTGGTTTTGAGGGGTGGGGGGGCGCTACCTGTTTTGGGTGGTGGATGTGGAGAGGGTGGGGGAGGAGATGGCGCTTAAGCTTTTGGAGGCGCCGGGGAGGGTTCAGCTTTATGGGGGGTCGGCGTCGTTGGAGGTGGTGGAGGGGGTTTTGGAGGAGGTGTCGCCGCTTCGGCGTGGCCGTTTTGTGTCTGTGCGGTTTTTGACGCCTGCGCTTTTGCAGTATCCTAAGCCTCCGAGGGTGAGGGCGCCGTCGGTGAACGCGCTGTATCCTCAGCCGCGGCTCGTGGTGCTTAGTCTGGTGAATAGGGCGAGGGTGTATGGGGTGGAGGCTCCCCTTTCCCTGTACGTCTACGCGCCTTTTGACCTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAGAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //