Array 1 37753-40421 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDR01000016.1 Shewanella sp. MSW scaffold00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37753 28 100.0 32 ............................ TGTTGAAGCGATACCCGCACGGCGCGTTAAGG 37813 28 100.0 32 ............................ GTCGGTGTCGTTTACGCCGCCAATCGCGTTCC 37873 28 100.0 32 ............................ CGTAACGGAGCAAGTACCCGTTACGGAACCAG 37933 28 100.0 32 ............................ ACATATGCGCTCAGGCTTACGTAAACTACATC 37993 28 100.0 32 ............................ TATTGGAAGTAGCACGACTGAAGCGTTACGCT 38053 28 100.0 32 ............................ TGTAGTGACAACTGTTTTTGTTGCTCTCGCTG 38113 28 100.0 32 ............................ GACTATGAAAATCCCTGAGAAGATTTGGGAAA 38173 28 100.0 32 ............................ TAACACCACCGTCTGCCGCAACCCACAGTGCG 38233 28 100.0 32 ............................ TGCGCGCGTAGGCCAAGAGTCCCATCGTGCCA 38293 28 100.0 32 ............................ ACGAAGAAGATTATCGAAAGACGCCCTGCCAG 38353 28 100.0 32 ............................ ACACACGTGTAGCGCAAATCAATACTAGACAT 38413 28 100.0 32 ............................ GTCGGGCCGCTTCCTTGCATACCATGACCCCA 38473 28 100.0 32 ............................ GACCTGGAGGCCCAGCACGAATGCGTCCGACA 38533 28 100.0 32 ............................ TCTTCGTGGCGTTTCCACTGTCGCGGCGTAAT 38593 28 100.0 32 ............................ GCCATAATTGTCGAGGCTGGATACTCCAATAA 38653 28 100.0 32 ............................ AGTTGGCTGGGTGGTGCCCCATGTAATCCCGA 38713 28 100.0 32 ............................ ACCATGCAAAAGCTGTCAGCAGTGCGCCGGTA 38773 28 100.0 32 ............................ CGCCTATCATGTCGCGCACAGGGTTGACCGCG 38833 28 100.0 32 ............................ GTGATTAACGCAGGCGGGGACGCCTTCCGCCA 38893 28 100.0 33 ............................ CTCTAGGGCCTCGGGGCGGGTGATGCCGTCATA 38954 28 100.0 32 ............................ ACTGTGCCCCGGTATGCCGTCGCGCCCATCTT 39014 28 100.0 32 ............................ GGGCTGGCAGCGCGCCACGCTAGGACGTTCTT 39074 28 100.0 32 ............................ TAGCACATCATCAAACGCCCCTGGGGCAATCA 39134 28 100.0 32 ............................ TGTAAGCGCTCGACGCGAAAACCTGTGATCTC 39194 28 100.0 32 ............................ ATTACGCCGCCCGCTTACTGAGGGATGTTTTC 39254 28 100.0 32 ............................ TACGCCCAGGAGGCCGGGTTTGCCTTGCAAAT 39314 28 100.0 32 ............................ TCGACCAGTTGTTACCATCCCAGCACCATTAA 39374 28 100.0 32 ............................ AATGTCTCCTATTACGTGATACGCTCCAATCG 39434 28 100.0 32 ............................ TAGCCGCGCAGTCGTCCCACTCGATTGGTAGC 39494 28 100.0 32 ............................ CGCCGCTGCTGAATGTCTCTGACGATATCGGA 39554 28 100.0 32 ............................ AAATCCCTGACAGTCTCAGGAGCCTGATTAGC 39614 28 100.0 32 ............................ GTTGTGAGGCATCCAATCTGGAATATGTACTT 39674 28 100.0 32 ............................ AAGCTCGGTATCAAGTTTGGCGATCAATGGAA 39734 28 100.0 32 ............................ TTTTGCGTCACGCTATCCTCATCATCAGATTC 39794 28 100.0 32 ............................ ATCAAGTCAGAGACAGCCCTAACCTGGCCATC 39854 28 100.0 32 ............................ TGTTGGAGATTTGGGGCTAACTGGACGCATCC 39914 28 100.0 32 ............................ TCCCGGCGGTGCAATTCTGCATTGAGTTTGTT 39974 28 100.0 32 ............................ ATAAGGAGAATTGGTAAAATAATCGCGAAATA 40034 28 96.4 32 .C.......................... AGAAAGCCAGGGATGATAGTAATCCAGTGCTT 40094 28 100.0 32 ............................ GCTACCCGCCCTTACTCGCTTATGTTGCGATA 40154 28 100.0 32 ............................ TCGCCGCAATGCTTACAAATTGGCCTGCCTTT 40214 28 100.0 32 ............................ TTTATCGGCGCTCATGCGCTGGGTCGCATGGT 40274 28 100.0 32 ............................ GTAGGAAGCAGCTGCCACTACTTTTGCTGTTC 40334 28 100.0 32 ............................ AGCTTATTGACGTTGATATGTTGGCCGATATT 40394 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTTTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTGTATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAAGTGATCTGAATAGTGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCTGGCAGGCTCTGGCCGAGCAGGCTGTTCCCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGACTGTAGGTGACACCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAACTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGTTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //