Array 1 23354-22691 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RCXO01000025.1 Bacteroides intestinalis strain bf_0095 Scaffold_0025, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
     23353	    47	  89.4	    30	......G.C...........A...................A.....T	GCTGATGTGTTTGAGATAGAATACACCAAG	
     23276	    47	 100.0	    30	...............................................	ACGAAAGACATCGTAGATAAACCCTTTCTC	
     23199	    47	 100.0	    30	...............................................	GACATCATAACCAATCCGACACCGGAAGAT	
     23122	    47	 100.0	    30	...............................................	TTCAATTCAAAGTTAAGTTCTTTGGTACAA	
     23045	    47	 100.0	    30	...............................................	CCGCAATAGCATCACGATGGCGTTCAATCA	
     22968	    47	 100.0	    30	...............................................	CTAACACACTCTGGTGATTTGCTACCAAGT	
     22891	    47	 100.0	    30	...............................................	CCTGGCTGTCAGCCTTAGACATCTTCAATG	
     22814	    47	 100.0	    30	...............................................	AATTTGACAAATTCTTGTTGTTTGATACAA	
     22737	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
         9	    47	  98.8	    30	GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGGAACAGC	                              	       

# Left flank :   CAAGAAGCACATGGCTATTGCCAAGGGTTTGCTGAGTGAGGATGATTATTTGCTTCAGGAAATTCTCTTTAATCCGCGCACTCCCTCGCAAGTGGAAAATATTCGTCTGGAGCTGAAGAATTTGCTGGAAATTATCAGTACGAAGGATGCGGAAGGGATGAAGCAGTATCTGACGAAGATTAGGGAAAAGATAAAATAGATAGGTGAGATTAAGGGATTGAAGAGAGGAGGGGGACGAAAAAGGAAATGGGGCTTCTCTCTTCAATTTGTTAATAAAGAGAGGTGATGATATTTAGGATTAGGTAGGGGCATACTTATTTCTAAAATTATTGAAAATAGTCAAATATTGGCAGGAATGATATGAAATTCTCGTATACTACTTTATTTGAATTATTGTAAATGACTCTGTGTTTGTTTTGCTAGAACCATATTGTAACTGACTTCTATTTAAGTAGAACCATTGGAAACAGTGCATAGTATTCCGTGAGAAGTGCCCCGTC
# Right flank :  ACGACCTACGTTACATACTGATATCCAATTGGTTACAAACCATTTTTGAATTACAAAAACAATACTGTTTTTAATTAAAAAATCCCGCATTTAAGCGGGATTTCTTTTTCTAGAAAAGCTCTAATTGCTGGCCGGGAGTATTTATGTCCAAAGATCTTTTCCCATAAAACAACTCTATATTTCCAAATTGCTTATCTGTAATACACATAATTCCAACCTGTCCATGCTCCGGCAAGAAAGATTTAACTCTTTTTATATGAGCTTCTGCATTCTCACTACTAGCACAATGACGAACATAAATAGAAAACTGAAACATAGTAAAGCCATCTTTCTGCAGATTCTTTTTAAAATCTACATATGCCTTCTTATCCTTCTTTGTTTCAGTAGGTAAATCAAATAATACAAGTACCCACATAATACGATATTCACTAAATCGGTTCATCTCACATTTCCGGATATATTATTCTACGTAGTTCACCACTAAAGCATTTATACAGAGA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGGAACAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.83%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.00,-2.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.87   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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