Array 1 388-1736 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBC01000048.1 Pseudomonas aeruginosa strain env099 NODE_48_length_8487_cov_6.35526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 388 28 100.0 32 ............................ GCTTCGAACTGATTCGGCATCAGGGCCATGAA 448 28 100.0 32 ............................ ATGCGCACCAGTGGCATAACAATCATCAGGAT 508 28 100.0 32 ............................ TGCCGGGACTCCCAAGGGGCTGGGGGATCCAA 568 28 100.0 32 ............................ TTGAGTTTCTCTACGAAGTCGGGGGATTCATC 628 28 100.0 32 ............................ CGCAATCGACCCGCCCCGATCGCAAGTTTGCC 688 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 748 28 100.0 32 ............................ ACATAGGCCAGCTCTGGCGATTCATCGCCAAA 808 28 100.0 32 ............................ ATTGATCACGGCGAACGTGCCGGGCAGGAGTG 868 28 100.0 32 ............................ TCGTCCATTCGCGTGCGGGCCAGTCCCCGGAA 928 28 100.0 32 ............................ ATGCAACGCCATCTCCTCGGCCAGGTCGATCT 988 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 1048 28 100.0 32 ............................ TGGTGCGCAAAGGCTGGAGTCCTGCGCATGAC 1108 28 100.0 32 ............................ TGCAGGCGCTGCGCGCGCAACTGGAGAATGGC 1168 28 100.0 32 ............................ GATGGCGTTGCCCGTGCCGCCTCGGGCCAGGG 1228 28 100.0 32 ............................ TCGATTCCTTTATCGCAGCGCGGCATGCGGAA 1288 28 100.0 32 ............................ GGCAAGGGCTACATGAACGTCACCACGGCAAT 1348 28 100.0 32 ............................ TGGACGACCTGGGTGTCGTTGGTTGACGAGTG 1408 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 1468 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 1528 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1589 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1649 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1709 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 387-1435 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBC01000026.1 Pseudomonas aeruginosa strain env099 NODE_26_length_65779_cov_5.29914, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 387 28 100.0 33 ............................ AGTATCCCGAAATCTATCAGTGGATAGATAACA 448 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 508 28 100.0 32 ............................ AGACTGCGAAATGAACGAGGGGATTTCCACTT 568 28 100.0 32 ............................ AGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTT 628 28 96.4 32 T........................... TGTGGAATAGCGCCCTCATCCCTTCGGATACG 688 28 100.0 32 ............................ ATTCGACGACGTGCCATAGACCGCTTGCATCG 748 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 808 28 100.0 32 ............................ GCTTCACGCCCGTCATCGTGCGGCAGGCTCGC 868 28 100.0 32 ............................ ATCTCCTTCTGCCGGTTGTGATCTTTATTTCA 928 28 100.0 32 ............................ TTCACGATCCGTAAGAAGGCCTCGAAGATTTT 988 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 1048 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 1108 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 1168 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 1228 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 1288 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 1348 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 1408 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11007-9959 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBC01000026.1 Pseudomonas aeruginosa strain env099 NODE_26_length_65779_cov_5.29914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11006 28 100.0 32 ............................ TGCTCCTGGACCTCAATTCCATAGGTCTCCTG 10946 28 100.0 32 ............................ TCCCAGATCCTCGAAGACCTGATCGAACCGTT 10886 28 100.0 32 ............................ GTCGGGGTTGAGCATGATTTCGATCACCGTCT 10826 28 100.0 32 ............................ ATCCGGGCAGACCGCCAATGGCGTGGTCCTGA 10766 28 100.0 32 ............................ TGGCCCGCTGGTGGGCAACGGGTGCGACCACG 10706 28 100.0 32 ............................ AGGATGAAAATTGCTAGCAATCGTCTCGATTG 10646 28 100.0 32 ............................ TCCGCAAGGGAGGGAGGGGAAGCTTTATCTCC 10586 28 100.0 32 ............................ TGCGGTTGGTGGCCTGAGATGCTGCGCGCTGA 10526 28 100.0 32 ............................ GTGCCGAGCTGACCGACAACAACAAGGTCAAG 10466 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 10406 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 10346 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 10286 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 10226 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 10166 28 100.0 32 ............................ ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 10106 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 10046 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9986 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //