Array 1 1621-752 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RCKQ01000001.1 Moraxella catarrhalis strain 105/417/3 NODE_1_length_216214_cov_17.085914, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
      1620	    28	 100.0	    32	............................	ATGGGCGGAGACGGTGGTGGTCTTGATGATTT  	
      1560	    28	 100.0	    32	............................	CATCGAATCGCAAAAACTCACTGTTGATCAAG  	
      1500	    28	 100.0	    32	............................	ATATCGCTAAAATCTGTGCCAAGCGTATCATA  	
      1440	    28	 100.0	    34	............................	CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC	
      1378	    28	 100.0	    32	............................	ACTGTCAATATAAGCCTGCGGAAATTCATAAA  	
      1318	    28	 100.0	    32	............................	GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC  	
      1258	    28	 100.0	    32	............................	GCACTTTCAATGCTTGGTATCTTGCTGTTAAC  	
      1198	    28	 100.0	    32	............................	ATCGGATTATGTTGTTCCAGTTTCAAAATATC  	
      1138	    28	 100.0	    32	............................	AAAATTATTACAAGATTTTTGGAAGTTAGCTT  	
      1078	    28	 100.0	    32	............................	AAGAATAATCAGTTTTAGCTAAGTCAAACAGA  	
      1018	    28	 100.0	    32	............................	AATGGGCGGTCAGCTCAGGCGTAAACACAGCA  	
       958	    28	 100.0	    31	............................	ACCGAGCGTAACCGCATTACCGCGCCATCTT   	
       899	    28	 100.0	    32	............................	TGAGTTGTACGCATAAAATGCCGTTTTGCTGT  	
       839	    28	 100.0	    32	............................	ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA  	
       779	    28	 100.0	     0	............................	|                                 	
==========	======	======	======	============================	==================================	==================
        15	    28	 100.0	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                  	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//