Array 1 834-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUZR01000029.1 Thioalkalivibrio halophilus strain HL17 Ga0073316_129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 833 36 100.0 34 .................................... GTGGTCGGGCATGATTACTTCTCCTTATTGTTCC 763 36 100.0 33 .................................... TGTAAGAGTCGGCGTACCGAACAGCCTCGGAGC 694 36 100.0 33 .................................... CCAGAACGACTGCAGAGCTTCGAAGAGGCGGGC 625 36 100.0 33 .................................... CGCCCGGGCCGACGCATATAGACCACCCCTCGG 556 36 100.0 33 .................................... AACCCCTCCTTATGGGGTTCCCGTCCGTGGGGG 487 36 100.0 33 .................................... GATATTTTCCGCTGTCAGTGAATTTCATGGCTT 418 36 100.0 31 .................................... GGCCATCACGAACGCCTCCTGCCCCGGGGCA 351 36 100.0 34 .................................... CATGAACGCGTGTTTCAGCATTCATGGGCTGTGG 281 36 100.0 33 .................................... GCGTTTCCAACGCCTTATCGTGCCTATCGAGTA 212 36 100.0 33 .................................... CCGATGTCCAGGATTTCCTGGACGGTGTACTCC 143 36 100.0 32 .................................... CAGACTGTGGGATCCTGTTCCGCGAACGTTTC 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 12 36 100.0 33 GTCTGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Left flank : CTTGCTCCTGTGTGGGTAGGTGAGTCGCCTGGGTGCGCGCCGGGAAGGTTGCCACGCGATTGGAGATCGACGTTGTACGTCGGGTAGTCCCATTTCGGTGTTTGGAACAGGCTAGAAGGATTCTCGACGTATGTCATGGGCGACAACCTTGCGGGGCCCGCCTGTCTGAGGGTAACCAACGGCGATCTCATGGTGCGACGCGCGGAGAATGTGGCACGAATCCAGGCGAGTCTTCCCGGGTGTCGAGGCTGTCGGCATCGGGGGTGGCCCGGAGCTGGCCGTGGCGCGCTCAGGCAATTCGGCGGAATCTTTCTTCGCATTGTTCGATACCCTCGCGGGTTGCAGTGGCGGCACGTTGGCGACTTGCGGGGCGCCTCCCCAGCAAGCTACCCTTGGCCATGTTCATGGCGGCTCAACAAGCAAACTTTCGTTGCACCATTATGGTGCAAATGTGGGCTTGGCAACCTGTTGAAAGTAGCGATGGTTTTCGCGGCGAAAGA # Right flank : CCTTCGCTCAGAACTGCTGATGTGGTGGTCAAGTGATTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1-4493 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUZR01000032.1 Thioalkalivibrio halophilus strain HL17 Ga0073316_132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================== ================== 1 36 100.0 38 .................................... GGAGCGGACTATCCGGCTGTTGACGATTGCGCTAAGCA 75 36 100.0 38 .................................... GCAGGGGTATGAAGCATGGGTAGAAGCGGGCCAGGCTG 149 36 100.0 36 .................................... CTGTACGCGCTTCACCCGGCCGGCGGCGGTGCGCGG 221 36 100.0 38 .................................... TGCTACCCCATCGCGGACAAGCTGGACATCCCGCGGGA 295 36 100.0 36 .................................... ACCGGCTGATCGCCGACATGCTGGAGGCGAACGCAT 367 36 97.2 38 ....................T............... GTCGGATTTACAGCGATCGGCGTATACCCGCACTGGGA 441 36 100.0 40 .................................... GCCGCGACTCTGAAGGGCAGCGCCTGGTGGTCTCCCGGAA 517 36 100.0 35 .................................... CCCCAGCGAGCGCGGGCAGGAACTCGAGCGCCGCG 588 36 100.0 37 .................................... ACCAATACATCGAATTCACCCGCCACCTCGGGGGCTC 661 36 100.0 37 .................................... CTCCTGAGTATTTCAAAACGGGAGATCGAGCGGTTAC 734 36 100.0 37 .................................... CACAAATCAGTGGACTTACTTCGACTTTGGCAGTAAG 807 36 100.0 36 .................................... TGCACCAGCCCCCGACAGCAGTCCAGACGCCTGGCT 879 36 100.0 39 .................................... GATGTTGCCGATGAACACCCGGCGGTCCGGGTCGGTCTG 954 36 100.0 39 .................................... CGGGGCTGCGGGTGCGGAGAGGCGCGAAATCGCGTTAGG 1029 36 100.0 37 .................................... CCAGGGCGAATACCGGATTTCGTCAACGGTGCGTGCG 1102 36 100.0 39 .................................... CAGCGCACTGATCTGGGCGTTGTTGGGCGGTGGGACGCC 1177 36 100.0 38 .................................... GCCACCACCGATCCAAACTTCGCGCGAGTGGATCAAAT 1251 36 100.0 40 .................................... CACAGACGAAACCCTGCACCCGCAAACTGACAGCGCGTCC 1327 36 100.0 37 .................................... CTCGACGCTGACCCCGGCTACGCCGGTCTCATCGCCA 1400 36 100.0 35 .................................... GCCTCACCGGTCTCTTTTGCATCCTTCGCGCTGGA 1471 36 100.0 37 .................................... CCGTGAGGTGCATTGTGAGGTGCATCAAACACGACTC 1544 36 100.0 36 .................................... CCCAAGGGCGACGGAAACAATCAAGTATTTCTTTCG 1616 36 100.0 38 .................................... GGCGACGGCAGGCGCTTGCCATTGTCCCGAACCGCAGC 1690 36 100.0 38 .................................... GTCTTTGTCGGTCAGGCCCGCATCAAACGTTTCCCCGT 1764 36 100.0 36 .................................... GTTCTGCCGAAGCCGTACCGTTCCAAGCGCGACGCC 1836 36 100.0 37 .................................... TTCGGGTTCATGCCGCACCTCCAGAAATGCTGCGGGC 1909 36 100.0 39 .................................... GGCGCGTGACATGCGGGGTGCGGCTGTCAGTTGATCTTG 1984 36 100.0 36 .................................... CATCTAGTCAAAAAAATACCCGAATTAGTCTGTGGG 2056 36 100.0 37 .................................... ATTGGTGCGGGCGGCGGGACTCGAACCCGCAAGCTCG 2129 36 97.2 38 ..........................G......... ATGGAGTTTCAATAGAGCAAACACAGGCCCAAGAAATT 2203 36 100.0 37 .................................... ATCAAATCTTCCATCGAACCACGCCCGGTACACAATG 2276 36 100.0 39 .................................... TCGGGTGGTGATTGCCATTGACCCGGCTGTAACGACAGG 2351 36 100.0 38 .................................... CTAGCGGGACTACATAGAGATTTGGCAATTAAAGATAC 2425 36 100.0 38 .................................... GCAAAACATACCCAAAATTGCCAAAATGAGGGTGAGTT 2499 36 100.0 39 .................................... GTGCAGTACGGACCCCACTCGACGGATACAACCTCCCCG 2574 36 100.0 40 .................................... GCGTGCTAGTAAGCGTCGTGGTAATCATCCCCACGCGCCC 2650 36 100.0 36 .................................... GACCCCGAGTGGGAGCAGGCGGCCGCTGAATACCGC 2722 36 100.0 39 .................................... CGGGGGGATGTTCGCGGTCGAAATGTTCGGCTACCGCGA 2797 36 100.0 39 .................................... CTACCTTCGTCCACTACATCAAGAGGACTTCCAGGATAG 2872 36 100.0 37 .................................... CCTCTTGTAAAATTTCTTGTGAAAAGTCCGAGGCTGA 2945 36 100.0 41 .................................... CCGTTCAGGCATATCAGGACGGCGCGGGCGGTGTGCGGCGT 3022 36 100.0 37 .................................... CTCTGTTCTTGAACTAGAGTATAGTGATATTGAAATT 3095 36 100.0 37 .................................... CTTCGGCCCGCAGCGGGCGGTGGTATCCGTTCATAAG 3168 36 100.0 39 .................................... CACGGCCACCCGGACGGCTGGGAGCCGGAGGAGCCGCCG 3243 36 100.0 36 .................................... CGCGCAGATCATCAGCGCCTCGCGCTGCGCGTCCTC 3315 36 100.0 38 .................................... CGTGGTGTTTCATCGGGCTCCCTTTCGGAACAAGCGGC 3389 36 100.0 36 .................................... CATCAATATCCGAATCAATCCAGCGCGGCACCTCGA 3461 36 100.0 38 .................................... CCTAGGCGTCCGTGTTCGCTATTACCGTCTGACCCTTA 3535 36 100.0 38 .................................... CCCGAAAAGCTGCTAGCCGAGGTGGGAGCATGCTAGAG 3609 36 100.0 36 .................................... CGCTTCCTCAGCCTTCTTGGAGGCCTGCCCCGTGGC 3681 36 100.0 38 .................................... CGGGTGATTGTTGGAGACCCCTCTAATCCAGACATTTT 3755 36 100.0 38 .................................... CTTGCAGGGATTCTTGATGAAGATGATTTCAATGCGGT 3829 36 100.0 36 .................................... CGATTCGCAATAGTGTCGGATTAACCGAGCCATTCA 3901 36 100.0 39 .................................... CTCGGCGGTATCTACTGTGATAATCGGATTATTGGCTTC 3976 36 100.0 39 .................................... CAACAGGAGGGAGTGATGAGTAAAAAGAATCAGATGAAG 4051 36 47.2 74 .................NNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNCTTTGCTCCGGATAACCGATTACGCGGATGACCTGCCGCGCAACGATGTTAAGGG 4161 36 100.0 41 .................................... CCGGAGTACACATGAGGCTGTACACTGCCAAACGCACTGCC 4238 36 100.0 36 .................................... CCATTCCGAGGCATTCAGAAATTCTTTAATTATGGG 4310 36 100.0 37 .................................... CCACCGGAATACGCGTCTTCGTCTGCGCCGCAGTATG 4383 36 100.0 39 .................................... CAGGCGACTAATCCTTCAGCCTTTTCACATGCGAAACGG 4458 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================== ================== 61 36 99.0 38 GCTTCAATGAGGCCGGAGCACTTTGCTCCGGATAAC # Left flank : | # Right flank : CCAGGCCCTGTTTTGGGGCGCGTCATGCGGGGGCTGCGGGGTGATGTTGCGAGAGGTGGGCTGGTCAGGGCGGCCGAAGGCGGTCCCGCAGCCGTGACGCCCTGGGCGGGGTGGAGAAAAGTACCTTTTTGACAATGAGATGGGGAAACGCGAGGGCTCCCCGGGGTTGCTGGCGTCATTGGAGTGCTCGCTCCGCTTCGGCGGTTTCAGACGATGATCGATTCACGTTGTACGGCCTGGAATGCCTTGCCCAGGCTGGTCACGCGCGGATCGACGGCGTCGGCCGGGCCAAGGTCCATCAGGAGGACGTGGTCCTCGTGATGATGGATGATCTGGTCCAGCGAGGCGGTCAGGTCCGCGTGGCGCCTGCCGTTCATTCTGCATTGAAACACGGAAAGTTGCAGCCACTCGCCGTAGCCTTTCATGAGTTTGAAGACGGCGCGCCAGCGCTTGGGGTTGCTGATGTCGTAGGTGACGATGAACAGGTGTTCCTCCTTCAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGGAGCACTTTGCTCCGGATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.20,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 13236-12788 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUZR01000008.1 Thioalkalivibrio halophilus strain HL17 Ga0073316_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 13235 36 100.0 34 .................................... CACGGGGAGACGACTCAAAAAATAAAAGTCAGAG 13165 36 100.0 33 .................................... TGTTCATCACTTCTCCCTTCAAAGGTGTTAAAC 13096 36 100.0 33 .................................... CCTATGCCGCCGAATGCCCCTACGGCCGTGGCC 13027 36 100.0 33 .................................... GCGGGTTTACTCCCAGACCAGCTCCATAGAGCT 12958 36 100.0 32 .................................... GCCTTCGCCGTCGCTACTGGGTGCATAAGAGC 12890 36 100.0 31 .................................... TCTGCATCATGGCCGGGGCCTGGGGCAGCTC 12823 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 7 36 100.0 33 GTCCGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Left flank : AGGCTCTCGCTGTCGCCACTGCCCCGCGCCTCGATCGGGGCATTCGGCGTCAACCAGGCCAGCAGAAGACGATCCTTGTCCGGGTCAATCAGCTCACCGAGCTGGAGGTAGAGCTCGTCCGCTTCCTGCGGGGCAAGAAGGCATTCGTGGACCGATTTCTGGCCATCGATACGCCACTGGACCAACTGCCGGTGAACGCGCCGACGGCGCAAGGGGCTGCTGATGTCGTAAGCAATGATCGCGGGTCGACGTCGCATGGTGCGGCTCCTTTCGATTCGATGAATTGGCAATTACGATCCTCCACCGTGCGCGCCGCCGTGTCCGGCCCGGCAAGCTTGTCGGGATTGTCGAGCCGTCGGACCTTGCGTGGCACCTCTCCGGCGGGCTAGCCTTTGGCCGTGGTTATCCCGACTCAACAAGCAAACTTTTTCTGCACCAGATTGGTGCAGGACTGGACGTCGCAAGCCGCTGAATCTACGGCTTATCTACGAAGCGGAAGA # Right flank : CTTCCGGGGCCGCACCTCGCGGATGCGGTTTACGTCCGACCGGTTACCCGGAACGCGCGCGACTCGAACCTCCGCGTGTCAGCGGTATTTCCGCCGAGTGCCGCACATACCGCCGCTACGCCCTCCACCGAGATACTTCCCGAGTCCGGCCACAACCTTTTCGCAGCTGCCGCATCCGCATTTTTTTTGTACCCTCCAGCAAAAAATCGTCCCCGCCGCCAGGAGGCAAGGCCTCCGGCCCGTCAAGGAAGGACCTATGCGCTACCACGCCTATCTGTTCGAAGCCCGCTCCATCCAGCCATTCCTCTTCGCCTCCGGCCGCCTGGCCGACATGGTGGCGGGGAGCGACCTGCTGGACGAGCTCTCGCGTGGCATCCTCGACCAGGCCCTGCGCGCCTGCGAGGTGGAACCCGAGTCGCTGCCGGCACCGCGGCGGGCCGGTGGTGCCCTGTACCTGGTGTTCGAGGACGCAGAGACCGCCCGGCGCTTCCGGGCCCTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //