Array 1 107575-106446 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOJ01000001.1 Salmonella enterica strain BCW_1550 NODE_1_length_544139_cov_3.49646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107574 29 100.0 32 ............................. GCTAAACAAATTATCACTAGGACTTCATTAAT 107513 29 100.0 32 ............................. ATCCAGCGCCTCGCGAGTGTTGCCAGTTTTGC 107452 29 100.0 32 ............................. ATTATATCGATCGACCAATCGATGAGCACCTC 107391 29 100.0 32 ............................. TTTTTTTCAGCGTCTTCTTTTTCTGGCATTCC 107330 29 96.6 32 ..A.......................... TTTCCCGATTGGGCAATGAGCGCAATCACGCC 107269 29 96.6 32 .............T............... GCTGCGCGAGAAACAGAGCGTAAAACAGCGGT 107208 29 96.6 32 .............T............... GGGATTGGTGAGTCATTTGTGTTCTCAATCTC 107147 29 93.1 33 ...........T.T............... TCCATAGTTGCCGTTTCAACGGCTAGCACTGAC 107085 29 96.6 32 .............T............... AGTTCGGAGAGGGGCTTTATAAACTGGGCCGC 107024 29 96.6 32 .............T............... GCGGTAATGTTGGCTGTCTGCGTGATAAATGC 106963 29 93.1 32 A............T............... GGTATCTATATCTCGCGTGATGATCTGCTCGC 106902 29 96.6 32 .............T............... TCGCTTGCGCTCCGAATGGGGCGCACACTTTC 106841 29 96.6 32 .............T............... AGCGCGGCATTTATTGGGCGATGACTCACACC 106780 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 106719 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 106658 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA 106597 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 106536 29 100.0 32 ............................. AGGGGCATTCCGCAGTCGGCAAGGGCTGAAAA 106475 29 93.1 0 A...........T................ | A [106448] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124776-123833 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOJ01000001.1 Salmonella enterica strain BCW_1550 NODE_1_length_544139_cov_3.49646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124775 29 100.0 32 ............................. ATCGCCTTGTTACCGGCGCTATCAATTGCCGC 124714 29 100.0 32 ............................. TCCGGGGTCAGCATTATCCAGTTATTGCTCGC 124653 29 100.0 32 ............................. CGGATCGCATTTGATATATAAAATTACTGGCA 124592 29 96.6 32 ............................A GAATCGCGCGCGCTGGCAGGGGATATGATGGT 124531 29 100.0 32 ............................. CAGGTCACTAAAATTTGCAGGGTTATCCACAG 124470 29 100.0 32 ............................. CTGCGCGAGGGTCACGCATTTTCGGAATCCCT 124409 29 100.0 32 ............................. CACTGGATTTGAATTATTTATTTCACTTTCAA 124348 29 100.0 32 ............................. GACTCGGTCTGTTTTTTGATTTTGGCAATCAG 124287 29 100.0 32 ............................. ATCCGCTCCATGTCTTCGGGCAGTTGGCTACA 124226 29 100.0 32 ............................. ACCAATAGCAAACTAACAGACGAGCAGGTGAG 124165 29 100.0 32 ............................. CCGTATCGGGTATTTAATTTTTACGTGAGAGA 124104 29 100.0 32 ............................. ACCAATAGCAAACTAACAGACGAGCAGGTGAG 124043 29 96.6 32 ............T................ CGCGCCGTGCTGGTAGGAGGCACGGAGATAGA 123982 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 123921 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 123860 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //