Array 1 137018-139025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOZ010000010.1 Pseudomonas aeruginosa strain PAH10 NODE_10_length_203764_cov_32.195927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 137018 28 100.0 32 ............................ ATGCCGAGGAGCATCCCGATCCAGGCAAGAGC 137078 28 100.0 32 ............................ TCGATCTCGGTCGGTCGCGCACCTTTGACTTC 137138 28 100.0 32 ............................ AATGAAGATCGTTGCTCGGTTGATCGCGAGCT 137198 28 100.0 32 ............................ AGCAAGGTCGGGGAGAACGGCGTAAAGCCGGA 137258 28 100.0 32 ............................ GAGCGGTAGCCGGTGTTGCTGGCTGCCGAGCG 137318 28 100.0 32 ............................ ACTGTCTGCTCAACCGAGCTGTCCAACCGAGC 137378 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 137438 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 137498 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 137558 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 137618 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 137678 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 137738 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 137798 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 137858 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 137918 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 137978 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 138038 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 138098 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 138158 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 138218 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 138278 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 138338 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 138398 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 138458 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 138518 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 138578 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 138638 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 138698 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 138758 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 138818 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 138878 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 138938 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 138998 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 34 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 148778-147550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOZ010000010.1 Pseudomonas aeruginosa strain PAH10 NODE_10_length_203764_cov_32.195927, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 148777 28 100.0 32 ............................ GAAGAGCCTGCAAGGGGAGGGTGAGTGACATG 148717 28 100.0 32 ............................ AGTTATTGCAAGCCACGCGCCTCAATTATTCG 148657 28 100.0 32 ............................ TTCTGGATTCAGCTCCTTCCCTCAATTTTCTA 148597 28 100.0 32 ............................ GGGAGTGCAAGCAGAAGAAGGGAAAGCGCCGT 148537 28 100.0 32 ............................ TCCTTATGCTCAGGCTGTTCGCGGTAGTGGCT 148477 28 100.0 32 ............................ AAAGATAAGGCTTTGATCGCTCTCCGAGAAGC 148417 28 100.0 32 ............................ TCAGCGACCTGCGCGAGTCCGGCGCCATTGAG 148357 28 100.0 32 ............................ AGATGCTGCGCAATCACCGCCAGACCGGCTAC 148297 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 148237 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 148177 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 148117 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 148057 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 147997 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 147937 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 147877 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 147817 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 147757 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 147697 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 147637 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 147577 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //