Array 1 133062-134052 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHT01000004.1 Escherichia coli strain MOD1-EC6501 MOD1-EC6501_4_length_319683_cov_100.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133062 28 100.0 32 ............................ CCATCGGGTTTAAATGTAGCTGTTAAATCATC 133122 28 100.0 32 ............................ GAACGCATGGCGGGGCGGCGGCGGGCGGGTAT 133182 28 100.0 32 ............................ ATCCCAGCGATAATATTCCCCATCACCCTCTG 133242 28 100.0 32 ............................ AGGACAACGCCAGGCAACGGGTGCGCCGTATT 133302 28 100.0 32 ............................ GCAAAGTGAAGGTTGTTCCGGTCGTTGGTGGT 133362 28 100.0 32 ............................ AGTCCCCAGCACCAGCTGCTGGGGGTTGCCCT 133422 28 100.0 32 ............................ AGAGGCGCGTCAGTTATTATTAAATAATAACA 133482 28 96.4 32 .........................G.. ATCATCTCCAGCTGGCCGACGTACTGGTGATC 133542 28 100.0 32 ............................ ATGACACTCCAGAAATCAAAATTCGCGTCATC 133602 28 100.0 32 ............................ TGCAATCGTTCAGGCTGCTGCCGTTTATCAAT 133662 28 100.0 32 ............................ ATATTGCAGAGCGCAACATAATTACTTCAGAT 133722 28 100.0 33 ............................ ACTCGTGGGATAGACAGATCGGGGTGGTCGAGT 133783 28 100.0 32 ............................ TGAACAGTATACATAATTTTATTCACATTATG 133843 28 100.0 32 ............................ GCAAAAGAGCCTGCCAGTAATGCTGCGGCCTG 133903 28 100.0 32 ............................ ACTGGCTTGCCTTCATCAATTTTGCCATTGTT 133963 28 100.0 32 ............................ TTGCTAGGATAAATGGCGGTTCTATTGAAAAC 134023 28 85.7 0 ....................A...C.CT | T,C [134043,134047] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCAATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAATTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTAATTGTTAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTGTAGGCTGGGGCGGTGAAAACCCTATTTTGGGAGGTGAAGGTAATTTGTTGATAATTAATGGTGCTGGAAGGTAAGAATAAAAAAGGGTGGCAGCAGGAAAATGAGATGATTTTGCTTTATTAACAACGAGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCGTTTGGTCGTGCCATGACACTCTCAACTTCAAACCATTAGCTTTAGCACGCAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGAATGGGAACTTCCGTTACTCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 148315-149544 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHT01000004.1 Escherichia coli strain MOD1-EC6501 MOD1-EC6501_4_length_319683_cov_100.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 148315 28 100.0 32 ............................ CAATTCATCGGCGGGCCATGAGCGTATTTCAA 148375 28 100.0 32 ............................ AGCGACCAAGCGATTATGAGTTTGGCGGAGAA 148435 28 100.0 32 ............................ AACAGGCGGCTCTTGAAGCAGCGATGGAGGAA 148495 28 100.0 32 ............................ TCAATAATGCGCTCGGGATACATGGCGGCAAT 148555 28 100.0 32 ............................ GTCTTCGGACTGAAGATACAAAACATTTTGTC 148615 28 100.0 32 ............................ ATCTGAAGGAGTTCGGCACCGGACGGCCCAGC 148675 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAT 148735 28 100.0 33 ............................ ACGCCAGCGCGGCAAGCTCCCCATGCCTCAAGC 148796 28 100.0 32 ............................ ATACACGCCACACGTTCGCCTGCTGGCTGCTG 148856 28 100.0 32 ............................ AACAGACTGCCTGAATGAATTAATGAAAAAAT 148916 28 100.0 32 ............................ AACAGACTGCCTGAATGAATTAATGAAAAAAT 148976 28 100.0 32 ............................ GTGCCGGGTGATGCCCCGCTGATATTCAGCCA 149036 28 100.0 33 ............................ ACGGATAGCCGCTGGCAGGTAAACACCGGTTAA 149097 28 100.0 32 ............................ AAGAAAACAAATATCGTCCCCGCCCGCTAACT 149157 28 100.0 32 ............................ ATGCCGCAAAACCGGCTGCGCCGCCAATTAAT 149217 28 100.0 32 ............................ AGAACCCGCCCGGTTTACACGTCAAAATCACC 149277 28 100.0 32 ............................ ATTCAGACAATAAACAACAATTTTCCCGTCAG 149337 28 96.4 32 ....................G....... CGCTACACTGACACGCGTTACTGATTACGCGT 149397 28 100.0 32 ............................ CTTGAACTTGCCAGAGTTAAGTTCGGAAGTAC 149457 28 89.3 31 ...AC...............G....... GCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC G [149483] 149517 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTTTTTTTATTTAAGGTGCATCAACGCGAAAAAAAGCCCGTACTTTCGTACGAGCTTTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAATACTCCATCCTGGAATATTTATTCCCCGTAACTCTCAGACGCAAAAAAGGTCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38094-37272 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHT01000023.1 Escherichia coli strain MOD1-EC6501 MOD1-EC6501_23_length_63326_cov_98.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38093 29 100.0 32 ............................. TTATCATGCGGATTAGCGCGGGCAGCCGCATA 38032 29 100.0 32 ............................. TCAAAAATCGACGCTTTAAACGCCTATATACG 37971 29 100.0 32 ............................. CGGTCAATTTAAACGGCAGCCCGAATTTAACA 37910 29 100.0 32 ............................. ACTGAGGATCATCGGTTCCTGTTAGCAAACAC 37849 29 100.0 32 ............................. AATATAACCTTTCTCAAAGGCGGTGTTCTGGA 37788 29 100.0 32 ............................. ATCGGCGAGGTTGTGCAGGGTATTTTATCGTG 37727 29 100.0 32 ............................. ACGTAACACCGGATCCGGCGCGTACTGCATTA 37666 29 100.0 32 ............................. CGATCCGGACGTATTATCCGCGCAGGCGTATG 37605 29 100.0 32 ............................. AACGCTGCAAAAGGCGCGAAAACGGTACAGAG 37544 29 100.0 32 ............................. CGGCGGCAGAAATACTAACAGGGCAGGGACAT 37483 29 100.0 32 ............................. AGCAGAACAGGTGAGTATCTGAATTTCCAGAT 37422 29 100.0 32 ............................. TCGAAAATACCAGCTTCTTTCATCGCTTTAGT 37361 29 100.0 32 ............................. ATGCCAGCCAGCGCCTGAGTGGGCGCTACGGC 37300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGTGCATATGTCTATCCCGATCATGGACGAATCTGGCTGACGCAGCGTGTACTGCGTGAGCAAGGCGCTATTCAAATGCCACACGCAGCCCGCCTTCTTATTGAATCAGTCTACGGTGAGGACGTGGTAATGCCGGAAGGATTTGCCCGCAGCGAGCAGGAACAAGTGGGCAAATATTACTGCGATCGCGCAATGGCTAAAAAGTTTGTGCTGAACTTCAGGCCCGGCTATGCCGCCAATATCAACGATTACCTCCCGGAAAAACTGTCGACACGTCTGGCTGAGGAGTCTGTTTCCCTGTGGCTGTCTACCTGTATTGCCGGTGTGGTAAAGCCTTATGCCAGCGGTGCTCACGCATGGGAAATGAGCGTTGTCAGAGTGCGTCGAAGCTGGTGGAAAAAACATCGCGATGAGTTTTCTTTACTGGAAGGGGATGCGTTCAGGCAGTGGTGCATTGAACAGCGGCAAGAGCCGGAGATGGCAAACGTGATTTTAGTCA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAGTTCCCCCCGCCCCTGCGGTAGAACTCCCAACTCCCAACTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58296-57779 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHT01000023.1 Escherichia coli strain MOD1-EC6501 MOD1-EC6501_23_length_63326_cov_98.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58295 29 100.0 32 ............................. CGCGGATACATGCAGCAGCCAAATCGCACAAT 58234 29 100.0 32 ............................. ATATTACGTTTCGCACGCTGCTTAAACAATCG 58173 29 100.0 32 ............................. CTATCCAGTATTACCTTCTTGACGCCAGCTGC 58112 29 100.0 32 ............................. GATCGCAGGTGGTTTTATGGTCTGTGATGGTC 58051 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 57990 29 100.0 32 ............................. TTGTTTTTGGCTTTTTCGGCGGCGCTGGCGTC 57929 29 100.0 32 ............................. GACCGTTACGGGCGCGTTCTTGGACTTGTTGA 57868 29 93.1 32 .........A..T................ GACACAGAGCGCCGCTATAGCGCCTATGCCAA 57807 29 79.3 0 .A...T.....A....T...A.......A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTGAAATTTGGTAGATTTTAGTTTGAATAGAGTTATTTTAAATATTTATCTTTTTAATCAATGGATTAAATGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //