Array 1 1165993-1164543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKS010000001.1 Listeria welshimeri strain FSL W9-0507 NODE_1_length_1480184_cov_75.346486, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1165992 29 100.0 36 ............................. AATTAAGGACGCTTTATTGGATGTTATTACTATTCA 1165927 29 100.0 35 ............................. CTGCTCACATAATGATAAAAGATGTACTCACCTTT 1165863 29 100.0 35 ............................. TTGTTTGCCTCCCATTTATTATTATTAGTAATACA 1165799 29 100.0 36 ............................. ACTACAGGTGACAGCTCTTTAGATTTATTGCTTTAT 1165734 29 100.0 38 ............................. GAAGAAAAAACTGCATTTTTTCAGCAATGTGCAGATAT 1165667 29 100.0 36 ............................. AATTTTCGTTATGAAGTACTTGAACATGTCTCTGAT 1165602 29 100.0 34 ............................. TTTTTATGAATAACGTTTTCAGTCATGTTCTAAC 1165539 29 100.0 37 ............................. ATCATGGGAGGGGATATCTATATTAGATCTACAAACT 1165473 29 100.0 34 ............................. CTATTGCCAAAAATGGACTTTAAATCAAATCCTG 1165410 29 100.0 36 ............................. ATTTACAAGACTCTCTCTCTCAAAGAGAAATCGAAC 1165345 29 100.0 35 ............................. CGGTCCATATCAATAAATTGTAAAGTCGCTTTGCC 1165281 29 100.0 34 ............................. TTTACCGTTAATGCAGATAATGACGGAAAAATGA 1165218 29 100.0 34 ............................. AGTGGAACTGGATGAAATTGTAAAGAATCGCTTA 1165155 29 100.0 34 ............................. TTGTTTAACTTTAGCTGTTGATAAAATTAGCAGC 1165092 29 100.0 37 ............................. ACATTACAAATAAGTATTTCCGCTCCCAAAAAGGGCG 1165026 29 100.0 35 ............................. TATTCCAAGACTGTTTACTTGCGTTCTGGTACATA 1164962 29 100.0 36 ............................. TTTCTCTTATTTCAGCTTCTGTGAATCTTGTTTTAA 1164897 29 100.0 35 ............................. TTCATTCCATTTTCTAACATATACTTATAAATTTC 1164833 29 100.0 38 ............................. ACTTTGCGTGCTTTTACAAACATAATTAATCCTCTCCT 1164766 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 1164700 29 100.0 35 ............................. TCTACAATTTCAGCAACAAAGTATTTCGTTTTCGC 1164636 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 1164571 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.6 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGAAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTCAACAATACACCCCCCAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCTGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTATTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //