Array 1 99234-96238 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALLL01000005.1 Streptococcus suis 89-4109-1 Contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 99233 32 100.0 34 ................................ TTGTTCGGACAAATTCAGGTCTACCCCTAAGACC 99167 32 100.0 36 ................................ AAAAATTTTCAGACTAGGCAGGTCTTGGACGAAACC 99099 32 100.0 33 ................................ AAGCAGGACTTGGCTATCGCGCAAAAGGATGCG 99034 32 100.0 33 ................................ AGCGATAACTTGCATCCGCTTTTTTTCGTCCAT 98969 32 100.0 33 ................................ ACGTTCTGGTTGATTGTATTGTTGTGTCATTCT 98904 32 100.0 34 ................................ TTTCTTTGCTGAGTAGATTTCCCAGTATGCATTT 98838 32 100.0 36 ................................ TAATCAAGTGTGCAAATTGTGGTGAGTTATCAACAA 98770 32 100.0 34 ................................ ACTTAGATTATAACACAGGAGGCCTAAAATGGGC 98704 32 100.0 33 ................................ CAATCAGCTCTGGCCAGAATTGAAGAATATAAA 98639 32 100.0 33 ................................ ACAGATATTACGGAGGATAGAATGAAATTTTGG 98574 32 100.0 34 ................................ ATCGTAACTGATGACAAGACCAAGAAGCAGAAGG 98508 32 100.0 33 ................................ CTGAAATCGTGCTACTTAAATTATTAAACAAAT 98443 32 100.0 34 ................................ ATGCACCGGGGTGGAGGTTAAAATCAGGGAATGT 98377 32 100.0 33 ................................ TGAAATGGCTTCATATCTAACAGAACTTGAAGG 98312 32 100.0 32 ................................ AAGGAGGACGGGGACTTGTCTTTCAATGGTGC 98248 32 100.0 33 ................................ AGAACACTGCATTTGTGAGAGTCTATTCGTCTC 98183 32 100.0 33 ................................ AACGTAGTACGAAAGGTAACGGTCTTGAATACT 98118 32 100.0 34 ................................ AGGCTCTCTTGCTGCAATGAAGGCAAGTTGGGCT 98052 32 100.0 33 ................................ AGGATTCCAGTCCTTAATAAGTGCCATCTTACC 97987 32 100.0 34 ................................ CATTTCAGCCCAGATATGCAGCAAACTATGAGGC 97921 32 100.0 32 ................................ CGAGCATAATTACAATGAATGATGTTATTAGA 97857 32 100.0 34 ................................ AATTAGCAAATGCCCCATATGGCACTACGCTATT 97791 32 100.0 35 ................................ ATTATTATATAATGTATATATAAAATAAGTAAACA 97724 32 100.0 33 ................................ GAGAATATGGCTTAACGCTTTACTGTGGTAAGC 97659 32 100.0 35 ................................ ATTATAAGTTCCTTTCTATGCTGTTCTTCTCCATC 97592 32 100.0 36 ................................ CGTTTGACTCTGGGTTTGAGTCACAAAGTTAGGTTT 97524 32 100.0 34 ................................ TAGGAGGTATTGATGAGCTATAAAGCTACATTCA 97458 32 100.0 34 ................................ AGCTCATCAAACTCTTTCAAATAAAGCTTGTTGC 97392 32 100.0 34 ................................ AATAATATCGTCCAGTACTTTTTTCTCCTGTCTA 97326 32 100.0 34 ................................ AAGGATGTCATGGGAACCGTATCTGGCATGGCTG 97260 32 100.0 34 ................................ AGGTATAGGAAGTTGTTCCTAACTGCTTGATGCG 97194 32 100.0 33 ................................ CGATCAATATGCTGCAATAGCGAATATTCCATT 97129 32 100.0 36 ................................ GTGCTTTTGCTCAATGCTTGTTTAACTGTTCCAGCA 97061 32 100.0 34 ................................ TTTTTATGCTCTATAAGTAATTGATTCTTGGACT 96995 32 100.0 34 ................................ CTCAATCTCTTCCCAACGGAAGAAATTTGGTAAC 96929 32 100.0 33 ................................ AAGTTCAAACTCTAGAAAATCACGTCTAGTCCT 96864 32 100.0 37 ................................ ATGTCTGGGAAGTATATGCCATCTCTGATTGTCAAGA 96795 32 100.0 34 ................................ TTGATTTAGTCACGGGTAATTTTACTCAGCTACA 96729 32 100.0 35 ................................ ACGCAGACTGCATGGACGTGATGCGTGAGTATACT 96662 32 100.0 36 ................................ TTGGATGACCTAGGCAAGGAATCGACATTTGGGAGA 96594 32 100.0 33 ................................ CAAAGCGTAATCATGTTTGTTTGGGTCTGTCAC 96529 32 100.0 34 ................................ TACAGAAAGTTGCTTTGCTTCCAGCTTTTGCCTT 96463 32 100.0 33 ................................ CCTCATAACATCTACCAACCTCTCTTCGCTCAC 96398 32 100.0 33 ................................ AATCTCATCTCCAGCGTCTTGATCAGTGATAGT 96333 32 100.0 33 ................................ TTAGCCAACGATTTCGGCTTAGTCCCATCATGT 96268 31 87.5 0 ........T..................-.T.G | ========== ====== ====== ====== ================================ ===================================== ================== 46 32 99.7 34 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTGTTCGAGGCGAGTTGGACAGTTATCCTCCGTTTATGATTTAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCTAAGTTGTGCGTTGACTTTGGTCAACGTGTACAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAAAATAGATTGCTGGAAATAATTGATAAGGAACAGGACGGTATCCGCTTTTATTTTCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTATTATAGATTATCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAACAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATAGCGCT # Right flank : AGTGATACTATAATAATCATTTCCTCAATAAAATCTTTTATCAGAGAATTCAGAGAAAAAATTTGATGATTCTTCTAATATTTTTGGTAATATTTTCTAATTTTTCTTCCCCTCTTTTTTAAATTTTCTTATAATAACTTACCCACTTCATGCTATAATAGTTATATGAGTTTATAAAAGGAGCATGAAATGTCAAACTTAAAAGAGCAGGTTGGTATTAAGGCGGCGGAATTTGTTACGGATGGTATGGTTGTTGGTCTAGGGACTGGTTCTACTGCTTACTATTTTGTGAAAGAAATTGGCCGTCGGGTTGCGGAGGAGGGGTTACAAATTATTGGTGTAACGACCTCGCATGCTACGGCAGAGCATGCTGCGTCCCTTGGGATTCCACTAAAAAATATCGATGAAGTTGAGTACGTAGACTTAACGGTAGATGGGGCAGATGAAGTAGATGGAGCCTTTAACGGAATCAAAGGTGGCGGTGCAGCTTTATTGATGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //