Array 1 3799946-3798825 **** Predicted by CRISPRDetect 2.4 *** >NC_013947.1 Stackebrandtia nassauensis DSM 44728, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3799945 37 100.0 35 ..................................... ATGGCGCAAGACCAGCTGATTGGGATTGGTGACCT 3799873 37 100.0 35 ..................................... TTCCGCGAGTGGGGACCGCTGCTGCTGGCGATCGT 3799801 37 100.0 35 ..................................... TTCCGCGAGTGGGGACCGCTGCTGCTGGCGATCGT 3799729 37 100.0 37 ..................................... AGGATCTCGTGGGCGTCGGCGCACGTCCACGACTCCA 3799655 37 100.0 36 ..................................... GAGGTCCTCAAGAACCTCGCCAACGCTCCGTTGCCG 3799582 37 100.0 34 ..................................... ATGTTGGGGTGCGACTGAATCCACGGAAGCAGCT 3799511 37 100.0 36 ..................................... TGCGGCTTAACCAGCCGCTAGACGAGTACAACGCCA 3799438 37 100.0 36 ..................................... CAGGAGTTGATCCGTGAGCACGTCGCCACCACGACG 3799365 37 100.0 35 ..................................... CCGATCGTCACCGCAGCCGCCGCGGTGGGACGCCG 3799293 37 97.3 36 ......G.............................. CTCGAGGTCCGCAACACCAACGCGGCAACGAGGACC 3799220 37 100.0 34 ..................................... TGTTCGCGGTTGATCGCTTTCCAGCTCTGCCAGT 3799149 37 97.3 34 ....................T................ AACACGGCGAACCTGGCACGGGCGGTAAGCCTTC 3799078 37 100.0 35 ..................................... ACGCACCAGCTTGTCCACCGCCGCCGTAGCGGAAT 3799006 37 100.0 36 ..................................... CCTGCTCCGGGCCTGTCTCCTCCGGGACCGCTCGTG 3798933 37 97.3 36 ..................T.................. CAGCAGCGCCGGGTCCGGGACGGCGGCGCGCTGCCG 3798860 36 78.4 0 ...............TC-...TG........T...GT | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 98.1 35 GTGGCGCTGGAGCACCAGCTCCAGCGAGGATCGCAAC # Left flank : GACGAAACCGGCCAAGCCAACATCGTCTGCGAACCCGGCCTTCGCCTCGCCTACCCCCGCGAAGCCCACGCCACCCCCGTACTCCTCATCCGCGGTCAACTCCGCAACGCAGGCGGCGTCACCTCCATCACCGCCGACAAACTCACCCCACTCCACACACCGATGCCAACGAAACCGCGCAACTTCCGGTGATAACCGCAATGCCACACGATCAGATGAGATGCCATCGAAGCACTCGACCACAAGGGACTCCCGCAAATGAGACCACAGCCTGTGTTATTAGAACTGGCACCCGCTCCTAGAGCTCCAGACGTCCTCGAGACACCGGCGTGCCGGAAAGGAGGCTGTGGTGTGTCCCAACCATGATGGCTTCGGAACCTCAAGTGATGTCGCGACACGCGGTTGGTTCCCAAGACGAAATTCTGTCAAAACCTTAGAAACTGGACACAGAACCCATGCTCCCTTCGCCCCCAAACCCATGTTCCTGCACTATAGGAACC # Right flank : GAGTCTGGGTTGGTGGCCGTCGGTTCGATCGCGTGTCGCACATTTTGTCCGTTGGCATGTCACAAGAACGACGTATGGTCGCTCTTGCTTGTTGACTGTATCCCTTCTGGAGCTTGGTACGTGGAACTGTTTGGGCATAGTGCCAATAGGGGCGGTGATCGTCAACTTCTTGAGGATCACTTGCGTGGGGTTGCGGTGTTGGCGCGCCGATTCGCGGGTGAGTTCGGCGTCGGTGATCTGGGGTACTTGACGGGGCTCTGGCATGACGCGGGGAAGGCGTCGTGTGCATGGCAGGACGGGCTAGTGCGAGCGGAGGCGTCAGGTGGCCCGGTGGGGGTGGACCACAAGACGTTGGGTTGCGAATTGGCGGCCGAACATGGACTTCAGGCTCTTGGGTTGGTGCTACATGGTCATCATGGCGGTTTGACGTCACCAGGCTTTGTGGCGGACGCGTTGAAGAACCTGAGTGAGGCTCAGCGGCGCAACAATGCTGAGGCGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCTGGAGCACCAGCTCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.40,-16.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3804987-3805734 **** Predicted by CRISPRDetect 2.4 *** >NC_013947.1 Stackebrandtia nassauensis DSM 44728, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3804987 37 100.0 34 ..................................... AGCAGCTGCAAGCCTATGCGCTGCACCTGGAGGC 3805058 37 100.0 36 ..................................... CTCGTCGACCCCGACACTGGCGCCCGCCGGATCCTG 3805131 37 100.0 34 ..................................... CATGGCGACGTCGAAACGCACCCACCGGCGGCGT 3805202 35 86.5 23 .........................C.-.C..-..G. TCCAGCTCCCGCTCCCGCTCCCG CT [3805226] Deletion [3805260] 3805262 37 78.4 36 C.CC....CCC..T..C.................... ATCGCTTCGGTTCCCGGATTTGACACTGAGTCGGAT 3805335 37 100.0 35 ..................................... GTGTGGTTCCCCGAATGATGGGGACCTGGATGACC 3805407 37 94.6 35 ................CA................... AACCGCCGCGTCTGCGGTATCCACACCGGTTGGGA 3805479 37 94.6 36 ................CA................... GGTGTTGGGCCGTACCCGCCCGACCGCGCGGATCGC 3805552 37 97.3 36 .................C................... TGCGACAGACTGCCGAGCCCTTTGGACAGTTGGCCC 3805625 37 94.6 36 ..............T.C.................... ATCATCCTGATCACGTGCGAAGTCCAGGCCCTCATT 3805698 37 91.9 0 ..............T.C..C................. | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 94.4 34 GTGGCGCTGGAGCACCAGCTCCAGCGAGGATCGCAAC # Left flank : GCCACCGGCCCCACCGTTGACTCCCGGGCCTTCACCCCTACCGCTGGGGTAGACCCGACGATCCTCACCACGGCGTCTCCACTGTCGACCATCACGCCCCACATCCCATCGTCTAGGTGTCGTGAAGGCATCACATCACGATCCCACCGGGACCCCTCCCGACTCGGACCACAAGGGACAGCAGCCAAGAGGGTGACCCGCAGCGTCTGATGCGGGCTGCGGCAGCAGACCCAGCACCGGCACCACCGCCCGTGATCGCGTGCGGCCTTCTTGTTCGCCAGCCTCAGGCCACTGAAGGTCGCGCACTCCCCTGCCGACGCGAGCTACTAGCATCGGTGGCCACCGCACCCAACGGGAAGCTACAGGGATGGTTCGGAACCTCCAGTGATATCGCGACACGCGATTGGTTCCCAAGACAAAATCACGGCAAATCCTTACAAACCAGACACCGGGCTCCACCCCACTTACCCTCGGACTCCTACTCCTGCACTATAGGAACC # Right flank : CAACAGCACTGCGATCCTGAATCGTTCTCGGTGTTCGATGGCCCTGGAGCAAGAAGCCCTAAAAACCACCAAGGCCGCGTTGGCCATAGTCGGCGACTTGGGCGGTGTAGTTCCCCAGTCGACTTCCGTCGTCTGGGGAACGCATCAGTTATCCGTCGCACGCTCCGCAACGCCAGTTTGACCCTTCATACTGGGCGAATGTCGACTTGAACGCTTTCGCAACCAGTGGCGATGTCGACTAGCGCGTCGTGTTCGTCGCGATCGATGCTTAAACGCCACCCGGTCTTGATGGCCACCCACGTGGCGACGTACGTGCACGTCACTGTTGCATTGAAGGCATCCATTCTGCGGGGTCTTGGTCTCCTTTGGAGCGGTTACTGCTGGCAGTGACAGCAACAAGGTGGCGGTGGTCATCTAGGTAGGTGGCATACGTCTTGCGTCTGTGAGTACTCCACTGTGAAGCCCCGGAATCCCATGTTTCGGCCAGAGGCACGAAATCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCTGGAGCACCAGCTCCAGCGAGGATCGCAAC # Alternate repeat : GTGGCGCTGGAGCACCCACTCCAGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.10,-16.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [7-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 3808599-3809352 **** Predicted by CRISPRDetect 2.4 *** >NC_013947.1 Stackebrandtia nassauensis DSM 44728, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3808599 37 100.0 35 ..................................... TTGGTGATGACGTGATGCTGGCTGGCCATCTCCAC 3808671 37 100.0 36 ..................................... GGCCGAAACGATGGGTCAGCAGAACGTCGAGGACCG 3808744 37 100.0 34 ..................................... GGGACCGCGTCGAGGTCGAGGCGGCGCATCGTGC 3808815 37 100.0 36 ..................................... TTCGCGTCGGCGGCGCCAACAGCGATCAGCGCGCGC 3808888 37 100.0 35 ..................................... CGGCACTGCTGCACTGGTCCGGCCCGGCCGTCGTG 3808960 37 100.0 35 ..................................... GAGTAATACGCCACGATGACCGCCGACACGTACGT 3809032 37 97.3 35 ............................A........ GCGAACTGGTGCGAACACCCCTGTGTCAACGACAG 3809104 37 97.3 36 ................T.................... CGTTGGAATCACCAGGGCTGCCCCGTGTCACTGCCC 3809177 37 97.3 36 ................T.................... GCGTTCGACATGCGCGGCAATCAGTTCGAATGGACC 3809250 37 86.5 28 ..............CTA......A.C........... TTGCTCATCAGATCCGCCGCGTACGCTG 3809315 36 83.8 0 CCC..........-....T................G. | G,A [3809319,3809330] ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 96.6 35 GTGGCGCTGGAGCATCCGCTCCAGCGAGGATCGCAAC # Left flank : TTGAGACAACCAACCCTGCATATGCGGGGAACACTGCGATCAGGCTACAAGCCTCACTAAGCCGGGCTGCCCCTGCCTGTGTGCGCATCCGATCGGGCGACATTGTGGAGCTTGTGGTGCTGCTGCGCCAGTGTTCTTCACGACGCCCATGTCTTCGTCGCTCGCAGTAATTCCTCCACCGGGCCTTGACTGGTCGTCGCCTTTTCGGCGTGGAGCTAGCTAGATTGGAGTCTCGAAACACAACTTTGCTCCCCCAGTGATCTGGTGACCGAGGCACTGCGGCTCGGCCTGTCCGGACTGGCCATCACCCACCACGACGTGAGCTACTAGCATCGGTGGCCACCGAAACCAGCGGGAAGCTACAGGGAAGGTTCGGAACCACCAGTGATATCGCGACACGCGATTGGTTCCCAAGACGAAATCACGGCGAACCCCCACAAACCAGACACCGGACTCCACCGCACTTATCCTCAGACTCCTATTCCTGCACTATAGGAACC # Right flank : CTGATGAGCAAGGACCACACTAAGACGGTCATAAAGGGTGGCGCTGGAGCATCGGCGGTGGGGGTGCGGGCCTCTCGTTCCCGCGAGAGGCCCGCGACTGAGAGCGCGTCCGCGGCAACGGGAACTCGCCTCAGAGTCCATCATTATGATGTATTTGCCATCCTGGATGTCATCGTGGAAGATCATTTTTCGAGAGTTTCTTCGCGAACTCGTCGCCACCATTCTCTATAAGGTCACCTGCAAAATCTAAATCATCTCGGCCGCTTTCGAACGGTCTATATTGGACTACTGAATGGTAGGCTTGCTGACCGGTTATAACGTCAGATGATTGTGCAACAAATTTCGGAAGCCTGTTGCAATTTTTCTTACCTTTTGGACGGGTCTCCCATTTGCGTTTTAACTGTGGCACCGTAGATGTCGGCTGCGTCACTGGATGCGGCCAGTCGGGTTCTTCACGGTTCCCGCCGTGGGGGGAAATTGCCTGATGCATCACCCGGACA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCTGGAGCATCCGCTCCAGCGAGGATCGCAAC # Alternate repeat : GTGGCGCTGGAGCATCTGCTCCAGCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.10,-15.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //