Array 1 43978-45836 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMP01000016.1 Escherichia coli strain MOD1-EC295 MOD1-EC295_16_length_126300_cov_53.1052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43978 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 44039 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 44100 29 100.0 32 ............................. TTTTCGGTAGTCGCGGCGGCGGGTACGTGATT 44161 28 96.6 32 ....................-........ ATGATCGCCGCCATGATTACTTGCCTTTTTTG 44221 29 100.0 32 ............................. CCGCCCATTGAATTAGCGAGGCGCATAATAGT 44282 29 100.0 32 ............................. TCCGAGCGCGTAATAGCGCGCGCCCGGAAACA 44343 29 100.0 32 ............................. TGCCAGGAGTGTTTTGATAAATATATTAGAGA 44404 29 100.0 32 ............................. CGTTGACCGCCATCAAAAATGGTACAACCTCG 44465 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATCAGA 44526 29 100.0 32 ............................. TAAATTAAAAATCGCCCGCACCGACTACCGAT 44587 29 100.0 33 ............................. CGGATCGTGTGCGTGCCGTCACTGCGGCCTGGC 44649 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 44710 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 44771 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 44832 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 44893 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44954 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 45015 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 45076 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 45137 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 45198 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 45259 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 45320 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 45381 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45442 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45503 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45564 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45625 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45686 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45747 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45808 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61335-62766 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMP01000016.1 Escherichia coli strain MOD1-EC295 MOD1-EC295_16_length_126300_cov_53.1052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61335 29 100.0 32 ............................. GCTGAACAGATAGCAGTTATTTTTAAAAACAT 61396 29 100.0 32 ............................. TGATCGGATATATCCCACATTGTGAATATTGC 61457 29 96.6 32 ............................C AATTTCAGTTCCTGACCGGTGTTCCGGTGTCC 61518 29 100.0 32 ............................. ACGAAAACTGGTCTGAAAAATTCATCGAGCGT 61579 29 100.0 32 ............................. GTACACGATTAATCAGGGTGAACGCGGTGTGA 61640 29 100.0 32 ............................. GGTATAGCAGGTATCAGCGCACCGAACATTGG 61701 29 100.0 32 ............................. ACAATTCACACAGTAGCGATTCAGCCGGATTA 61762 29 100.0 32 ............................. CCTCCGTGCCAGTGTTCCTCATACGGCCTGTT 61823 29 100.0 32 ............................. TGATCACGGGCGATGTGACTGCGGTTCAAAAT 61884 29 100.0 32 ............................. CCTTTTGGCGACGTCCCCATTAGTTTTGTAAC 61945 29 100.0 32 ............................. TTTTTCAACGCGTTTTATTAGGCTGTTCATGC 62006 29 100.0 32 ............................. GGACCAGCTTATATCTGATGCCGGTTTGCCTT 62067 29 100.0 32 ............................. AATCGGTATTCCATAAGCCCGCCCCGCAATGC 62128 29 100.0 32 ............................. TCGACAGCGCAGCAACTAAACGTAACGGCGCG 62189 29 100.0 32 ............................. ACAACCAAATGATCTACGCGTATTGCCATCTC 62250 29 100.0 32 ............................. TCGCCGCCCTGGGCCATTGCGATAGACGCTGC 62311 29 100.0 32 ............................. ATATACATGTTCCTGTCCGCCCCCATGCCCAC 62372 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 62433 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 62494 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 62555 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 62616 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 62677 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 62738 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACTTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGTGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //