Array 1 52-413 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYR01000002.1 Clostridium botulinum strain 55741-CD contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 52 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 120 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 187 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 254 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 319 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 385 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : ACAAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTCCG # Right flank : TAATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 3365-5238 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYR01000002.1 Clostridium botulinum strain 55741-CD contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3365 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 3432 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 3497 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 3564 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 3629 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 3693 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 3759 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 3824 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 3891 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 3956 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 4021 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 4090 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 4156 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 4221 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 4286 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 4352 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 4418 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 4484 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 4550 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 4616 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 4681 29 100.0 38 ............................. ACTTGATGTCCAGCTCCACCTAGTCGCATACCCATTGC 4748 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 4814 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 4881 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 4947 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 5012 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 5078 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 5145 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 5210 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : TCATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATNNGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTCATCGCAATGAAGTTATATTTTTTATTATTCTTAATGTAATATACATATTATTACAAACAGCATATATAAATACTGTAAAAACAATTCCAAGGAAGATAAATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6064-4716 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYR01000015.1 Clostridium botulinum strain 55741-CD map unlocalized plasmid p1BKT015925 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6063 30 100.0 37 .............................. GCTTTGAAAGCTTGTCCCGAATAGCTTGTACACTTAT 5996 30 100.0 36 .............................. GAAACACAGTTTAAAAACAAATTTGGAAGTTGGAAT 5930 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 5865 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 5799 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 5732 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 5666 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 5600 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 5536 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 5469 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 5403 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 5337 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 5272 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 5206 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 5140 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 5074 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 5009 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 4942 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 4876 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 4810 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 4745 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 374-730 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYR01000020.1 Clostridium botulinum strain 55741-CD contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 374 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 439 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 505 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 571 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 637 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 701 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTGG # Right flank : TTTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 992-1550 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYR01000037.1 Clostridium botulinum strain 55741-CD map unlocalized plasmid p1BKT015925 contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 992 30 100.0 35 .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 1057 30 100.0 38 .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 1125 30 100.0 37 .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 1192 30 100.0 36 .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 1258 30 100.0 36 .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 1324 30 100.0 36 .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 1390 30 100.0 36 .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 1456 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 1521 30 83.3 0 ......................GAGA.T.. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.1 36 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAGCATATAGCTAATGTTCGATTTATAGAAGATATTGATATTGAAGATATTCATGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGAGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGATATATGAATTAAACAATACGAACAATATATATAAAATTAATAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : AGATAGATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 201-1013 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYR01000027.1 Clostridium botulinum strain 55741-CD map unlocalized plasmid p1BKT015925 contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 201 30 83.3 35 ..C....C..CC.C................ ATTAGTTTACCACACTTTGGACACATTCTCATTAG CC [206] 268 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 334 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 398 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 464 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 530 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 595 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 662 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 726 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 793 30 100.0 36 .............................. AAAGTAGTTATTTTGAAACTTATAAATACATTAATC 859 30 90.0 30 .......A.......T..........T... TTGCATATGTTAAAATAGAAATAAATGTAG AAAC [883] 923 29 83.3 31 ......CT....T...-...A......... ATATTTAGTTTTAATTCGCAAGGATTAGTAT T [937] 984 30 83.3 0 ..............TT..A....C.....C | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 95.4 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : CTTTTAACATTCTTTGTATTAATCCGTTTTTACCCATAACATCATCTAAACTTTTGCATTTCTTAACTTCTTCTTTGTAATCAAAATCAGGTACTTCAAAATTTCTCATTTAGATTCCTCCTAAATTCTTATAAGTATATTATTCCAAACTAACCAATTTTCCATACAAAAAAGATGTAGGTTAATTTGTTTTTACACAAA # Right flank : CGAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGATGTTTGATTTAAAAATAGATAATATATATGCACATATAAACAAAGAAGCAAAAGAGACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACGCATAATTATACCGAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGATTTCAACAAAATCGAATGGATAACAAGTTAGATGAAAAATATATAGATTACACTTACCATAGTGAATTATCTGCATTGTTGTTTATAGATATAGAATATAATAATATTAAGGAATATACATTCAGTAATAATAGAAAACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 21033-21748 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYR01000078.1 Clostridium botulinum strain 55741-CD contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 21033 28 79.3 194 A......A.........-..AC.....T. TATTGATTTTGCAGTGAACCTCTAGTAGTGTTTTTGCTAAATAATTAAAACAAGCTTGTAAACTACTTATATCAACGTTTGTATAGATTTACTATAAAAAATGGCTCACTGCAAAATTTAGTGATTTTATGTTAAAAAGGTTATAAAGGATATGAAGTTATATAGTATTATGAAGATAATAGAAGGAAAATGGG T,A [21035,21043] 21257 29 100.0 38 ............................. TTGGAGATAAAGTAAGAATAGCATTAAGTGGTAATAAA 21324 29 100.0 37 ............................. TCAGAAGGTGTTATAGAAATAGGTGATAATAATTTTG 21390 29 100.0 40 ............................. GTATCTAAATCAATGTTAGATTTGGGACCAGAATGGTTAG 21459 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 21524 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 21589 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 21654 29 100.0 37 ............................. TACCTTTACACAACCAGAATTTTTATTAAATTTAAAC 21720 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 9 29 97.7 57 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : TATTCTGATATGCTAGTTGGTTTAGGTAATCTTAATATAAATGAAACTGCTAAATTCAATATTAGTGATGAGGCTACAGAATTTAGAGATTATTCTATAAAAGAAGCTGAGGTTTTAGGTGTTGAAGAGGAGCTTTCAAAAGAAGATAAATTTAATAGAATAAAAACTGCTCTACAAGGATTGCAATATTTAAGTCTAAAATCTAACCAATCAAATTATTTAACAGATACTATGCCTAAAGTTGTTATATTGGGTGAATACAAATGGGGAAATAATGTATTTCAAGGATTGATAAATAAAGATGGAGTAAATATAAAAGGTCTTGAGGAAGTAATTGAGGAATATGATAATTTTAGAAATAGTAAGATTTGGATAGGCGTTAGTAATAGAATTTTAAATAAAAACTTTGAAAATGTGAAAGAGGATCTTGAAGAAGCATTTAAGGATTGTGATGATGTTGTAATAGGTAGTGTAAAGAATGCTTTTGATGGATATTTAGA # Right flank : TTGTATAAAACTTGGGGATGTAGGTTGATTTGTGTAAAAACAAATTAACCTACATCTTTTTTGTATGGAAAATTGGTTAGTTTGGAATAATATACTTATAAGAATTTAGGAGGAATCTAAATGAGAAATTTTGAAGTACCTGATTTTGATTACAAAGAAGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //