Array 1 180717-184587 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOIU01000004.1 Rothia halotolerans strain JCM 31975 NODE_4_length_264049_cov_270.792, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180717 29 100.0 32 ............................. TTTTTCTGCTGCTTCTCCAAGTGGATATTGAT 180778 29 100.0 32 ............................. GTGGAAGCCGTCCCGAAGTCCGGGGCGACCAT 180839 29 100.0 32 ............................. CGAAGGAGCTCACCCAGTGAACATCTCCTGCA 180900 29 100.0 32 ............................. GGGGGCCTTTTTGAATATGGTGGGGATCAGAA 180961 29 100.0 32 ............................. GATTACCACGAAGGGATGATCCGCCACGCCTG 181022 29 100.0 32 ............................. GCCGAGTGGACCAAGCACAACATGTGGAGTGG 181083 29 100.0 32 ............................. CTGAGCTCCGGATCGGCGACCAGGTTGCCGAT 181144 29 100.0 32 ............................. TCGGTGGTCGCGAAATTGTTGCCGAGCTCCAC 181205 29 100.0 32 ............................. TTACCCTGGTCGTCCTTCACGCGCAGGTCCGG 181266 29 100.0 32 ............................. CGGCGACCCTCTGTTTAAGGGTCACAGCGCCC 181327 29 100.0 32 ............................. CGATCTCCCACCGGAGACCACCATTGAGACCA 181388 29 100.0 32 ............................. ATGGTTCAGCCCTCCTTCACGGTGAGCTCGGT 181449 29 100.0 32 ............................. TCATGGCAGCAACCACCAAGACCCGCAAGAAC 181510 29 100.0 32 ............................. CAGTCCCCCTCGCCACTGTTCCGCGGCGTGTA 181571 29 100.0 32 ............................. ATCGAGCAGACCATGACCCACAAGTAGACATG 181632 29 100.0 32 ............................. GTCATCGTCAAGGGCAAGGTCATCAAGATCCT 181693 29 100.0 32 ............................. GATATCAAGGGCGTGCTGAGCCAGGCCGGGCG 181754 29 100.0 32 ............................. GACGAAGGAATAAGCGCTCATGATCCACGGAA 181815 29 100.0 32 ............................. TGATCGAGCAGTGGGAAGCCACCCATGCCGGC 181876 29 100.0 32 ............................. ATCCGGGCCGGGAAGTCCTCGGTGCTGATCGC 181937 29 100.0 32 ............................. CGCGGAGAAGCGTCTGGCGCGGATCCAGTCCG 181998 29 100.0 32 ............................. AGGAGTCTAAATGGATGAGCTGACCGCGATCA 182059 29 100.0 32 ............................. CCCATCCCAAAACCGGCCATGCTGCTGTGGGG 182120 29 100.0 32 ............................. GAGTTCGTGGTCTCCAAGGCGGCCCGGCGGAA 182181 29 100.0 32 ............................. GAGTTCCCGCGGCTGCGGTTCCGCACGGTGAT 182242 29 100.0 32 ............................. GGTAAGAGCACCGTTCGGTACACCACGGTCCG 182303 29 100.0 32 ............................. AGCAAGGCGTCCGGTTACAACTGGATCCGCTG 182364 29 100.0 32 ............................. CTCGGCGGGAGCGCGACCGGCTTCCAGTGGCA 182425 29 100.0 32 ............................. GATCTCGGGCCCCTGCGCACGATGATCGAGGA 182486 29 100.0 32 ............................. GTCGCAAGGATCCTCGGATACCGCGACGCCGC 182547 29 100.0 32 ............................. GTGCTCTCCGGCATGGCCGCCTCCGCCGAAGA 182608 29 100.0 32 ............................. TTGAGGTCCTTGGGGGCGGGGATGGAGATCTT 182669 29 100.0 32 ............................. CTGCGCATGACCCAGGAGCAGCAGAAGGTCGA 182730 29 100.0 32 ............................. GCGTTATTACCGCTGTCGTCCTTGTACGCAGT 182791 29 100.0 32 ............................. CGAACCATCCATGCCAGGCGCCGGAGGCGTCC 182852 29 100.0 32 ............................. TGCTCGGCAGCCTGGATCAGTTCCCTGGGCAT 182913 29 100.0 32 ............................. CGGGTCGGGCAGGTCGCCGAGGTCAACGTCGG 182974 29 100.0 32 ............................. TGCTCGGCAGCCTGGATCAGTTCCCTGGGCAT 183035 29 100.0 32 ............................. CGGGTCGGGCAGGTCGCCGAGGTCAACGTCGG 183096 29 96.6 32 ............................A CCTGGTGAAGGAGCAGTGGGACAAACTTAAAG 183157 29 100.0 32 ............................. ACGTGCAGCCGTGCTGCGTCCGGGTGCTGCCT 183218 29 100.0 32 ............................. CTGGACCCCCGCGATCTGCTGATCCGCGATCC 183279 29 100.0 32 ............................. AGCATCGGCTGGTTCATGGCGGTTCCTTTCTG 183340 29 100.0 32 ............................. CACCGACCGGCGGTACAAGGGCTTCCGCCCGA 183401 29 100.0 32 ............................. TCCTTCGTCCCGGGGCGCAGGCCCATCTGAGC 183462 29 100.0 32 ............................. GTGCACTCGGCGATGCGGGTGATGACACGCTT 183523 29 100.0 32 ............................. CACCGACCTGCCCACCATCCGCAACCAGCAAA 183584 29 100.0 32 ............................. GGAGACAGCCTGCTCGACGGGGAGCATGTAGG 183645 29 100.0 32 ............................. TTCTCCTGCAGGTCCGGCCGCAGGTAATGGCC 183706 29 100.0 32 ............................. CTCTGGGTGCGGGCCTCGGATTCCAAGGTGCA 183767 29 100.0 32 ............................. GAACGCGCTCCACGTCGTTGGCCGAGACGATC 183828 29 100.0 32 ............................. GAAAGCGTGGAGATCGTTCAGGAGGGCAAGGC 183889 29 100.0 32 ............................. CGTGGGTGGAGACGATGTTGCGGCTGTCCAGG 183950 29 96.6 32 .....................A....... GAGGACGTCACGGTCTGGGGCGGCGTGAAGGT 184011 29 100.0 32 ............................. GCGGAACGCGGAATCCCTCGCGTTGGACATGG 184072 29 100.0 32 ............................. TGGCCACGCGCTGCTGAGCGCAGCTCACGCGT 184133 29 100.0 32 ............................. AGCCACTTGCCGGATATCTTGATCGTGCGATC 184194 29 96.6 32 ............................T CACGACCGAGCCGCGGACGGCCTCGATGACGC 184255 29 100.0 32 ............................. CTGCCGGCGGCGTGCGGGGAGTTCTCGGACCG 184316 29 100.0 32 ............................. CTCCTTCACCCCAGAGGCCGTGATCGTGCAGG 184377 29 100.0 32 ............................. ACGTTGTGCCGGCGGTTCGAGTTCGAGGCCTT 184438 29 100.0 32 ............................. GACGGCATGACCGTGGCCTGCTCCCGGGAGGC 184499 28 89.7 32 .............A..-T........... GTCCACGCGAAGCGGCACATCGTCCGCCTGGA 184559 29 89.7 0 ..................T..T......G | ========== ====== ====== ====== ============================= ================================ ================== 64 29 99.5 32 CTCTTCCCCGTACGCACGGGGGTATTTCC # Left flank : GCTGTACGGGCCGAACTGGTCCGACAGGGGGTCCTCAAAGGAATGCTCGCTGCGCTCATGGAGGTCCTTACCCCTTATCTGCCGGCGCGTGATGACGACAGGTTGGTGGCGGATACCGAGGATGAAGCCATTGGGCATACCCAATACGGAAAGGAGGAGTAGGAATCATGTTCGTCGTCGTATCGGCCAGCGCGATCCCGGAGCATCTGCATGGATATCTGAGCCGTTTTCTGTCCGAGGTGTCCACAGGGCTGTACGTCGGAAATCTCTCGCCCGGGGTTCGCGATCATCTCTGGGGACGGTGCGATGAAGCTGTGAAGGAAGGGGCTGTGACGATGATCTGCGGAGCTCCGAAGCACGAGCAGGGATTTGAGCTTCGGACCTCGGGACCGCAGCGTCGTCCCATCGTGGAGCTGGACGGGGTGCAGCTGGCGACGACCGCCGCACCGAAAGATGCCCAAAATCGGCCGACGAGCCGATAAAATGCCTAGTCAGTTGGT # Right flank : GGGGGACTGGTCAGTCTGCCACGGCCCGTTCACCTCTTCCCCGTTTGTGGGATCATGGCCGGTGTTGCTCTGAATCCCGGGCCTTCTCTGCCTACGCGGGGATATTTCTAAGTACGAGGTACTTCATAATCCCTGTGCAGCATTCTTTCTGCGCCCATACAGTCGAATTCTGGGTATCTACTTCATCGCCTTTCGGTTCCCTGGCCCCTTGTATTATGATGAGGAGCGTAAGCGTAATTACCCCACTGATCGACCTCACATCTGCTATCGCCAGATCACTTTCAGTCGGGACGGAAATCCTTCCATGTTCCAGGGGTGCGCTGTCTCTAGCCGCTAAGCAGCCGTCCCGCCTTCACTCCCGCGTGAACGCCAGCGACACGTTCTGACCCCCGAACCCGAAGGAGTTGCTCAGCACGGCCCCCTGCGGGAGATTCCGCCGCTGCGTCGCGACGTCGAGCCCCACCTCAGCGTCGACGCCGGCCGTGGCGAGGTTCCGGGTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGTACGCACGGGGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //