Array 1 8069-5389 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCZ01000003.1 Listeria monocytogenes strain ICDC_LM0077 LM0077Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8068 36 100.0 30 .................................... CCATGATTGATGACAAAACGGTATTTTCCT 8002 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7936 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7870 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7804 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7738 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7672 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7606 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7540 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7473 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7407 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7341 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7275 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7209 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7143 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7077 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 7011 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6945 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6879 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6813 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6747 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6681 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6615 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6549 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6483 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6417 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6351 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6285 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6219 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6153 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6087 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6021 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5955 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5889 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5823 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5757 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5691 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5625 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5559 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5493 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5427 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5392,5395,5400] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //