Array 1 57036-54688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOE01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57035 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 56974 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 56913 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 56852 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 56791 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 56730 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 56669 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 56608 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 56547 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 56486 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 56425 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 56364 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 56303 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 56242 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 56181 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 56120 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 56059 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 55998 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 55937 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 55876 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 55815 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 55754 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 55693 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 55632 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 55571 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55510 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55449 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55388 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55327 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 55266 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 55205 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 55144 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 55083 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 55022 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 54961 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 54900 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 54839 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54778 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 54717 29 93.1 0 A...........T................ | A [54690] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75647-73543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOE01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75646 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 75585 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 75524 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 75463 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 75402 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 75341 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 75280 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 75219 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 75158 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 75097 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 75036 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 74975 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 74914 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 74853 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 74792 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 74731 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 74670 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 74609 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 74548 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 74487 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 74426 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 74365 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 74303 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 74242 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 74181 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 74120 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 74059 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 73997 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 73936 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 73875 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 73814 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 73753 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 73692 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 73631 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 73570 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //