Array 1 1417403-1418646 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCZ01000001.1 Bergeyella cardium strain 1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================== ================== 1417403 37 100.0 30 ..................................... TACCTCGTCGAATCGTTTTTTTATAACGTT 1417470 37 100.0 30 ..................................... TAAGACCTGTAACGGCAATACTTGGAGGCT 1417537 37 100.0 30 ..................................... TCTTTTTTATTAGCCCAATCTCCAGCAAAA 1417604 37 100.0 30 ..................................... CAGTCCAGAATTCTGCATTTTCGAATTCTT 1417671 37 100.0 30 ..................................... GATTGGTTATTTGATTAAGAATTCGAGCAA 1417738 37 100.0 31 ..................................... TGGTTCAAAAGCTGGTATTTGAGTACTTATT 1417806 37 100.0 30 ..................................... TTTTCCTAAGGCTGTCTGCCAAGCTGCTAT 1417873 37 100.0 30 ..................................... TTCAACTGCCCCCAGTATCAGATTAAATAG 1417940 37 100.0 30 ..................................... TTAAAAACTTATATATTAAACCTCTACAAA 1418007 37 100.0 30 ..................................... ACCCAATTATGAACAAATGCTCTTAAACTC 1418074 37 100.0 30 ..................................... ATGGGGGACACAATGAGTTTAATGTATGCA 1418141 37 100.0 30 ..................................... AAAGTATCTTTAGAATAGAATACTAGGTCT 1418208 37 100.0 30 ..................................... AAGTCTAATACAGGGATATTTTCAAATGAT 1418275 37 100.0 30 ..................................... CATGCTTTCTTTATGTTGCTGGTAAGCCAA 1418342 37 100.0 30 ..................................... ACTTGAAGCTTAGAATCAGGATTACCTGGC 1418409 37 100.0 30 ..................................... TATTTGTACATCAAGGTCTCTCCTGCTGAA 1418476 37 100.0 30 ..................................... TGTGTATCTGGAAGATATTCTTCTATTATT 1418543 37 100.0 30 ..................................... TAAAGTTGTAGTGTCCATTTTGCTAGTTAT 1418610 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================== ================== 19 37 100.0 30 GTTGGAACTGCCCTTATTTTTGGAGGGTAAATACAAC # Left flank : ATGAGAGAATAAGAAGTGAAGAGCTATTTAAAGAAGTACACAAATTAGAAAAAGAAATATATGACCAAGTAGAAGATAAAAATTGTCTGCTAGAATCTAATAATCCAAATTTTAGAAACTATATTATTAAAGGTTTTTTATGTGAAATAAAAAATTATATAAAAGATACAGATACAGAAAATTATGCTAAAGAACTCAAAGAAGATAATGACCAAAATAAAGTTGAAAACTATACTTATGTTTTAATAAATATTAGAAATAAATTTTCACATAATCAATTACCAGACTTAGAGACATTTAACTACTGCCAAAAGATAAAAGAAATTAATAATGATCAATTTATTGCTAAATATTACTTGGATATATTTCGTACCATTACAGAAATACTAAAAGGAAATTTATAGAACAATATAATATAGTATTTTATAAGTTTTATTCTTCCTAATCAAAAGCAATAAAATGTTACTAATAAATAAGTTAATAACATTCTAATATCTGAG # Right flank : CTAAACACGCTATTCCAATACTGCTCTACACAAAATCACCAAGGGCTTTTCTACTATTTTTTTCGTAAGTTAGCCGACACGAAAAACAAAAGAATAATGAAAGAAGTATTTATAGTATCCGCTGTGCGAACCCCTATGGGGAGCTTTATGGGGAGCCTCTCCAGCATACCAGCGCCAGCACTTGGGGCTACAGCCATTCGTGGAGCGATAGACAGGATAGGCATCAATGCCTCAGAAGTAGAGGAAGTGTTTATGGGCAATGTAGTACAAGCAGGCGAAGGACAAGCGCCCGCTCGACAATCCGCAATACTGGCAGGGCTTAGTGATGTGGTTCCGTGCACCACCATCAATAAGGTATGTGCCTCTGGGATGAAAGCAGTAATGCTCGCGGCACAAGCGATTAAGTCTGGTGATATCTCTCTTGCCGTAGCGGGAGGGATGGAGAATATGTCTCAAACCCCTCACTATCTCGGAGGGAGAAAAGGCGTAAAGCTGGGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAACTGCCCTTATTTTTGGAGGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 1468311-1467262 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCZ01000001.1 Bergeyella cardium strain 1 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1468310 47 100.0 30 ............................................... TGCTAATTTGTTAGCATAAACTTTCAAAAC 1468233 47 100.0 30 ............................................... CCCCTGCCCAATGGTGATGTAAATTGCACC 1468156 47 100.0 30 ............................................... TATACAAGAAAACACTAATAACAACTATAT 1468079 47 100.0 30 ............................................... TATTATTTTTAGAGTATGAGCATATTTGTT 1468002 47 100.0 30 ............................................... AACATTATAGCGATTTAAATACAGCCCCTG 1467925 47 100.0 30 ............................................... TGGTGCGCTATATTCTTTTCCAGAGACACC 1467848 47 100.0 30 ............................................... TAGGGGGATATTGCCCAGTACTCAGATACA 1467771 47 100.0 31 ............................................... TACCGGTACCTCTACCGAGTACTAGGAATAA 1467693 47 100.0 30 ............................................... ATGGTATAAGAAATTCCAAACATTTCCAAT 1467616 47 100.0 30 ............................................... AAAGTAGGTTCTTCAATTCTACCTATTTGA 1467539 47 100.0 30 ............................................... TTAAATTTCTAATCTCATTAAAAGGGTTGG 1467462 47 100.0 30 ............................................... TAAAGGCGCTAATGTGTGGAGCTATATGCT 1467385 47 97.9 30 ....................C.......................... GCCCTGTTTGGTTACTCTATGGGAATGGAT 1467308 47 76.6 0 .........................T.....A...AT.T..GTTTTG | ========== ====== ====== ====== =============================================== =============================== ================== 14 47 98.2 30 GCTGTGTGATATCCACAAAAGTAATCAAATTGAAAGCAATTCACAAC # Left flank : GATAGACTTAATCGTCCATTAATAGTTGCGGTAAAGATGACCGTATCATCATTGTACAAGTGCTATACAGGGGAGAAAAGACAAATATCCTATCCTGAAATGTTATGAAAAATGAACGCTTAAATGCATATAGAGTTATGTGGGTAATGGTTTTATATGATTTGCCTACCGATTCCAAGGCAAGTATGAAAGCAGCCAATTTATTTAGAAAACAATTAGTTGATGATGGTTTTTCTCTCTTTCAATTTTCAATGTACATTAGGCATTGTCCAAGCAGGGAAAATGCAGAAGTTCATATCCGCAGGGTAAAAGATATTCTACCTAAATATGGTAAAGTAGCGATAATGTGTATTACGGACAAACAGTTTGAGGGTATTGAAATTTTTTATTCTAGAAAGCAAGAATTGCCTCCTCCTACTTGGCAGCAGCTCGAATTATTTTAAATTTTCAATTCTGATTAAAAATAAAAACCTTTGATTAACAAAGGTTTTTATTTTGAG # Right flank : TACTTAGGTAGCAGAGAGAGGTTAAATTAAATTATCTTAACTTTGTCGCCATTTTTTAATATTCATCAGAAAAACTAATAATAAGATTCTTAAAAATTCAGCTTATGAAGTTCTTAAATTCTTTTTTGGGACTTGTATTATTGGCTTTTATGCAAATTTTACAAGCTCAGCAGTCTGTTAAAAGCATTTTGCCGTTATTTTCACAGAAAAAACAGGTGGAATGGGCGGTGCAAACAGATAGAAATGAATCGGTACCCGTAAAATGGTATGAGCGTGAAAGCTCATTTGCAGTGGAAGGAATCCGAACTTTTATAGGATACTATAATGAACAATTGGTAGGGGCATTGTCGGTGCAGAGAAATGATATTTCTGGAAGTATTCAGTGGGTAGGAAAGGCTTATCATATTGATACTCGACAGGGGAAAGTTGTGATTAGTACCTCAGGTGCAGATATGAATTGTGGAACTTGCTCTGGGAACTTTTGTGCGTCTGATAGCGCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGTGATATCCACAAAAGTAATCAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //