Array 1 8637-9954 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQU01000036.1 Bifidobacterium longum subsp. longum strain MCC10043 contig0036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 8637 36 100.0 28 .................................... GGATGTCAATCAGGAACTTGTCCGTGGT 8701 36 100.0 28 .................................... CCTGACCGTCATTGGTAATGGTGGTATC 8765 36 100.0 28 .................................... ACACGTGGCGTTGGAATAATCCGTTAAG 8829 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 8893 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 8957 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 9022 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 9086 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 9150 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 9214 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 9278 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 9342 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 9406 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 9470 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 9534 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 9598 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 9663 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 9727 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 9791 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 9855 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 9919 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 21 36 99.3 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGTAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCGGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 68431-68775 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQU01000041.1 Bifidobacterium longum subsp. longum strain MCC10043 contig0041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 68431 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 68497 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [68503] 68581 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 68641 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [68689] 68689 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 68746 27 81.5 0 ......A.......C.....C....CG | GC,C [68764,68768] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTTGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTAAATGTACATGGCAGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCGAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23716-23139 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQU01000024.1 Bifidobacterium longum subsp. longum strain MCC10043 contig0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23715 28 100.0 33 ............................ GCGCCGGGGCGGCCCTGCGACATATCGACGATT 23654 28 100.0 33 ............................ CTTGGAAGCGGGTGCGTGATGGCCGGTAGTCAA 23593 28 100.0 33 ............................ GAAGATCGGATCAGGGGAAGTGGGAGACGGTAC 23532 28 100.0 33 ............................ TATCCTTCTCGTGGACAACGCGCTCGCCGTCAA 23471 28 100.0 33 ............................ CGTGAGCATGGCCTGCACGTACCGCAACATGCC 23410 28 100.0 33 ............................ TGAGCGCTTCGGCGGCACCGTCTACAAGCTCCC 23349 28 96.4 33 .............A.............. GGTGCATACTCTGCCTACAACGCAGGTGTCATC 23288 28 92.9 33 .............AT............. GTCCGTCGACGTAAGTCGCCATGATGCTGCCCT 23227 28 96.4 33 .............A.............. GTCTGGCTACTCGATCATATGAAGGCTTGTCCA 23166 28 96.4 0 .............A.............. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 ATCTACCCCGCACGCGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CTTGGAAGCGGGTGCTTAAAATATTTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGCGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGAAGTGGGGGGTAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACGCGCGGGGATAAACC # Alternate repeat : ATCTACCCCGCACACGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 27899-27438 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQU01000024.1 Bifidobacterium longum subsp. longum strain MCC10043 contig0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 27898 28 100.0 33 ............................ TCAACGGCATGGAAGTAGGAGACCGCACCCGTG 27837 28 100.0 32 ............................ CCCCAATCCCTCCGATAACAACATGGGAAAAG 27777 28 96.4 33 ..................A......... TGTCGGCGGCGGTCATGCTCAGGTTAGGACTGA 27716 28 100.0 33 ............................ TAGGCAGAATCTAATTGCCCAATTTTGGCAGTA 27655 28 100.0 33 ............................ TTCATCAGGAAAAACGACACCAAAGCCAAAGCA 27594 28 96.4 39 .......T.................... TAAACCTCGATAGAGCGATTGCGGTATATGACCTACCCC 27527 28 92.9 34 .......T.................A.. GCGGGGCGACATGCCGTAGATCCAACGGAAAGAC 27465 28 89.3 0 ....G.........T..........A.. | ========== ====== ====== ====== ============================ ======================================= ================== 8 28 96.9 34 ACCTACCCCGCACACGCGGGGATAAGCC # Left flank : CGGATCCGAAGGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACACTTCAACACGGCTTTACGTACGTTGGCCGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGATGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGTATAATCCGACTGTTTAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGATCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : CCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACGACCGGCTACACAATGCCATCACAGCCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //