Array 1 273086-273855 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQB01000004.1 Pilimelia anulata strain JCM 3090 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 273086 29 100.0 32 ............................. AGCCCGGAGCCGCCCCGGCTTCGCTAGTCGTC 273147 29 100.0 30 ............................. GGAGCACCTCGACCGGGTCCTGGCCGGACT 273206 29 96.6 32 ............................G CCCAAGACCCCAGCACCGACCCCGGACACCGA 273267 29 100.0 32 ............................. GACCCGGTCCGCTGGCCGGACCTGATCGGCCC 273328 29 96.6 32 ............................G GGCCTGGGCCTGCTCACGGCCGGGGCGCTCGG 273389 29 100.0 32 ............................. CGGACGGCGCAGCGGCCGCCTCGACGGTCGGT 273450 29 100.0 32 ............................. TCTGATTGAGATGCACGAAGAGGCCGCCCAGC 273511 29 100.0 32 ............................. CTGGCCTCGTCCTCGGCGGTCACTGCGCACCA 273572 29 96.6 32 ............................G TCCGAGGGATCCCAGACGGCGACGCTGACCAC 273633 29 96.6 32 ............................G CGGCGGCCCGAGCGGCGTCCCCAGCGGCGGCC 273694 28 93.1 32 .....-......................G AGGGATGCGCATCCCCGACATCGAGGCGGCCA 273754 29 93.1 44 ..........T.................G TTCGACCACGTGCGGGGATCTTCCAAGGCGCCGCGCTGCCGTCG 273827 29 86.2 0 ...............CG.....A.....G | ========== ====== ====== ====== ============================= ============================================ ================== 13 29 96.8 33 GTGCTCCCCGCACGCGCGGGGATCTTCCC # Left flank : ACAGCTCCGGCCGCACCATCGACTCGCCGGCGGCGATGAGGCCGGCGAAGTGCAGTACGGCGTCGAACCGCGAGCCGGGGGTGAGGACGCGGGCGGACTCGGCCAGGGACGCGGTGACGAGGGTGGCGTCCTTGGGTACGGCGTCGGCGTGGCCGGTCCGCAGGTCGTCGAGGACGACCACCTCGTGATCCGCGTCGAGCAGCAGCCGGGTGACGACGCTCCCGACGAACCCGGCCCCGCCGGTCACCAACACCCGCACGCCAACCCCTCCTCGCCTACCTGTCCGCCACCCTAGCGACCGTCGGTGAGTGGGGTGATCGTCGGACCAATGGATGTTCTGTGAGTTTCTCGGGGGCGATCCGCGGTGGGAGGTCGTGGGCGAGGGGCACGCAGGGGGCTGGGGTCGGTCGTAGTATTCAGTACGTTGGGTGATTTCGATCTCCGCCGGACGACTGAATGAAATTGAGTACTGCCAGCCCCAAAGCACCAGGTCAGCAAGT # Right flank : GCCATTCGGGAGCGCCGCGACCGCTGTCTTGCTCGGTGCGCAGGAATCTCCTCGATCACGAGGTGTAGTTCCTATGTCGCACAAGCTAGATTCACTCGTCTAGGTGATGTCGGTGGGATTGCTGGCTGGTACGGGGCCGAAGTTGTCGTAGCCCATGTCTAGTGTTCCGCGCCATGAGCACTGTGGAGGCTCGTCGCCTTGCCTTCTGGGGTAAGTCGAAGGCCGGTCGACGAGATGCCTGCGGACCGCTGCCCTTGCTGCAACACTTATTCGACGCTGCCGCTGTCGGTGAGATCTTGTGGGACGTGTACCTGGCACCCGGCATGCGTCGCCGGATTGATGCCGTATGCGGTGGTCGGGGTCGCGATGTTCTGCGCCTGCTCTGCGCCCTGCACGACGTGGGAAAGGCAACGCCCGCATTTCAGAGCAAGGATCCGGCGCTCGCTGCGGCGGTCAAGGCAATGGGGCTGAGGTGCGGCGGATTCAGTCGCGGTGCGGGT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 283424-283938 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQB01000004.1 Pilimelia anulata strain JCM 3090 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 283424 29 100.0 32 ............................. CCCGACTGCTGGGCCAGCAGCTCGGCGGCCAG 283485 29 100.0 32 ............................. ACCGTCGCGTCGACCCACCCGTCGCGCATCAC 283546 29 100.0 32 ............................. CCTTCGCGGACGGCGATGATGTCGGGGTCGAT 283607 29 96.6 32 ............................G CTCAGCCTGGCGATGCTGGAGCGGGCCATCGA 283668 29 96.6 33 ............................G GGCTCGCGGTGTCCTTGAGCTGCCGGTTGCACT 283730 29 96.6 32 ............................T TCGCGGACCATGTCGCGTAGCTCGTTCTTTCC 283791 29 96.6 32 ............................G TCCGGCTGCCTCAACACCCTGCTCTGCTCGAT 283852 29 89.7 28 ...........T.....A......G.... TCATCGGCGTCAGCGGGCTGACCCCGTC 283909 28 75.9 0 ...A.......CT...-T.....GG.... | A,G [283915,283936] ========== ====== ====== ====== ============================= ================================= ================== 9 29 94.7 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : ATGGCGCGGATCGTCGGCGACATCAAGCGCCTGCTGCTCGACGGCGAGCCGGTCGACGAGCACGACGCCAACGCGCTGTGGGACGACGAGGTGGGCGCGGTACCGGGCGGCGTCAACTGGGCCGGGACGTACGCCGGCGACATCGGCGCGCTCGACCTGATCGCGGTGACCGGGCCGGAGATCGAGGAGCCGAGGGTCGACTGGTGACGGTCATCGTGCTGATCGCGGCGGCCGAGGGGCTGCGGGGGCATCTGACGCGGTGGCTGGTCGAGGCGGCGGCGGGGGTGTTCGTGGGGAGTCCGAGTGCGCGGATCCGGGACCGGCTGTGGAACCTGCTCGCCGATCGGATCGGGGACGGGCAGGTGATCATGGTGGAACCGGCGGGGAATGAGCAGGGCTGGGCGGTACGGACAGCGAGGCGGGATCGGTGGGTGCCGGTGGACCTGGACGGACTGATCCTGATGGCCCGACCGCGCCGGTAAACCCCCAGCTCAGCAAGT # Right flank : CACCTGCACAAGCCGGCTCGCTCCCGGCCATCCGCGGTCAGAGGGCCGACCCTCGCGGGTGGCTTGCTCGGCTGGGTGAGCGAGTGCCGCGGGCCGCAAGGTCGGCCTGGTTGAATAGCGGGATGGTTGACCGGGACGTTTCATCGCGCGAGCGCCTGCTGTCGGGGATCCAGCCCACGGCGGACTCCTTCCACCTGGGCAACTACCTGGGCGCCGTCCGGCACTGGGTGGCGATGCAGGAGGAGTACGAGGCGTTCTACTGCGTCGTCGACCTGCACGCCATCACCATGGGCCATGATCCGGCGGTCCTGCGCCGCCGTACCCGCGTCGCCGCCGCCCAGCTCCTCGCCGTCGGCGTCGACCCCGAGCGCTGCGCCCTGTTCGTCCAGTCGCAGGTGCCCGAGCACGCGCAGCTCGCCTGGGTGCTGAACTGCATCACCGGGTTCGGCGAGGCGAGCCGGATGACGCAGTTCAAGGACAAGTCGGCCAAGCAGGGCGCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 199130-199863 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQB01000006.1 Pilimelia anulata strain JCM 3090 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 199130 28 100.0 33 ............................ CCAGCCGGGCGTGTTGGCGGGGCTGTTGGCCAT 199191 28 100.0 33 ............................ CCCCTCGTCGGTGGGCAGCAGGTCCCGCATGGC 199252 28 100.0 33 ............................ CCACCCACCCGTCGTCGTCCGCGGCAACAACAA 199313 28 96.4 31 ................G........... TAGGCCCGAGCGGGTGAGCATGCGCATGTCG 199372 28 100.0 32 ............................ GGAAGACACCTCCCATGAGGAGGGGTCTGGGC CG [199380] 199434 26 92.9 79 ....-............-.......... CGAGGCGCCGCGCGGTGAGCGCGATCATGACGCGCGGGGATCTTCCCCGCGGGGGAGTGTCGGGACGACTCGCTACGGT 199539 28 85.7 33 ....T..........TA.T......... GCCGAGCGCGACGGCGAGGCTGTCGTCCATCCA 199600 26 89.3 33 ....-......-T............... CTGGGATGTGTGGGAGGTCCAGGACGTCCCCGA C [199623] 199660 26 85.7 33 ....T............-A...-..... CGCGATCAACTGCTGGCACGGCTCGGGCGTGGC 199719 28 85.7 89 ...A...T............A.....G. ACGGCGGTGTGTCGTAGCCCTCGGCTCGGTGTCGCCCGCGTGTGCAGGGATCCTTCGTTGTGGCACTCGTCCACGATGATCCGGGCATC C [199744] 199836 28 85.7 0 ....T.................G..C.A | ========== ====== ====== ====== ============================ ========================================================================================= ================== 11 28 92.9 43 GTCGCCCCCGCACGCGCGGGGATCTTCC # Left flank : AGCGCGGTGTACCTCGAATCGCCATCGGCCGAGATCAAGGTGACCCGGCCGGGCGAGATCGACATCTACGCGCGGGTCTTCGCTCACCTCCAATCAGTCGCCGTGTACGGCCGGGACGCCCGCCGGATCATCACGCGCGCGCTGGACGACTCTTAGGCTTTCGGATGGCGCGCGGGCGCGGGGCGCGTGGACGGGGGTGCTCGCGCGGACGCTCTGGGACTCGGCAGAGGTGATGTGGACGTTTACTTTCTGAGTGGCGGTCGCCATGTTTTCTGCACTACGGCGGGCGCGAGTGGTCGGCAGGCAGGTGGTTGCGAGGAGCGGGCGGGGTGGACTTCTGTGCCGACTTGTTCGAGTGGGTCTGGCCACTGCCCACCAACCACGACGAGTGCCGGCCCGAGTAGCAATGCGGGCAGCGGAGCGGACCGACGGGTACGGTTGGCGTGGATGGACTGATTCTGACGGACCGTATCCGCCGGTAGATTCCCAGCTCAACAAGT # Right flank : ACCCCGCAGCATCACCCCGACCTCAGCTGATCGCTGGTCGCCCTTGCAAACGCCGGACCTCCTGCGATGAGTAGCGGCACGATCGGGCTCGCGCGCGCCATGTGGTCGGGGGTGCTCGCGCGGAGGCTCGGGGACACGGCAGGATGAGCGGTATGGGACTACCGGGCGAAGGGTTGCTGAAGGGGCTCGCCGTCACCGGGCGGACGATGACCCGCCGCGCCGGCACGCAGCAGTACCCCGACACGCCCCCCGACCTCCCACCCCGCTCCCGCGGCGTCATCGCGCTGCGGGAGGAGAACTGCACCGTCTGCATGCTCTGTGCGCGCGAGTGCCCGGACTGGTGCATCTACATCGACTCGCACAAGGAGGAGGTCGTCGTACCGGGTGCGGCACGGGCGCGGCAGCGCAACGTGCTCGACCGGTTCGCGATCGACTTCTCGCTGTGCATGTACTGCGGCATCTGCATCGAGGTGTGCCCGTTCGACGCGCTGTTCTGGTCG # Questionable array : NO Score: 4.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.79, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCACGCGCGGGGATCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //