Array 1 262765-262124 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROL01000004.1 Cronobacter dublinensis strain cro1364W contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 262764 29 100.0 32 ............................. GCACTTTCAAAGTGCCCAAAGATTTCCCGATC 262703 29 100.0 32 ............................. TGTATCCCCGACGCGATAATCACGGTCATTTT 262642 29 100.0 32 ............................. TTGCTCACCCCGTGCACGGTCGCCCGTTCACC 262581 29 100.0 32 ............................. TGGTTTCCAGCGTTTGCCCCTCGCGGTGCGCC 262520 29 100.0 32 ............................. AGCCGCACTCGTATGATGTCTGGCGGCAGAGA 262459 29 100.0 32 ............................. ACCAGCGGCCAAAGCGGCCTCGATTTCCCTCA 262398 29 100.0 32 ............................. CGAGCCTTAAATATTTGGAGTGATTTGGTTGT 262337 29 100.0 32 ............................. ACGACGTCGCGCAGGCGATCTGGTCCGCAAGC 262276 29 100.0 32 ............................. CAAACAACGTAAGCCAGCTTTACCAGCAGCAG 262215 29 100.0 32 ............................. GATCGTGTCGTAAAGGGTTAATTCCATATTTC G [262194] 262153 29 89.7 0 .C..................A.......T | G [262130] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGATATCGAACCGCCGCAGCCCGCTGCGGATATGCTGCCGCCTGCTATTCCACTGGCGGATTCGCTGGCTGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGTGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAACTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAAAATGTGGAGATGTAATAAAAAGGTTGGTGGAATGTTGAGTGTGAAAAATTTCCTTATAGAACAGTGATATAGTTTTAGA # Right flank : TTGGAATAATTCAAACGAAGGTTTAGATTCTTCGGAAAATAGAGTTGTGGTTATTTTTAATAAATATGGTAACGCTTCTTAAAATAGCTAATTTGTATTTTAGTTAATGGATTTTAAAACTTTATTACAATGTGTTTTTCGGAAATCATATAGCATTCCCTGACCATTTTTTTTAAATGGAAATTTTATATGGTATGGGATAAATATGCGGCGATAAGACACGTGCGTGATCGTGCTTATAGCCAAAGTCATCATAAATGTGAACTCTTTGTTAAAGAGGCTATTATTGCGGGTAGAGTAGATATCTATCCCACACCCTCAGCAAAAGATATGGGCAAGGCGTTGATAAAAGCAGGGTTTTATGAGGTTTATGGGGAGCCTATTGCTGGTGATGTGGCGGTGATCCAGGCAATGCCCGGCCATCCTGATGGCCATGCATGCATTTATGATGGGCAACTTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGCAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 290547-289256 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROL01000004.1 Cronobacter dublinensis strain cro1364W contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 290546 28 96.6 32 ....-........................ CGAGGTGCCGGATATTCTGCGTTCCTACTTTG 290486 29 100.0 32 ............................. TCTAAAATTTTAATTGGCGTCCAAACTAAGGA 290425 29 100.0 32 ............................. AAAACAGTCAAACGCCATAGAACTTGGTGGAC 290364 29 100.0 32 ............................. GTACTAATTGGATGAGGTATCAAATGAAAGCG 290303 29 100.0 32 ............................. GGTAGCACATTCGGCCAGCGCGCGCAAAACAA 290242 29 100.0 32 ............................. ACAACAATAAAAATGAGCCCGCATCTGAGTGT 290181 29 100.0 33 ............................. CCAACGAACTCGGCCTCAAAACGAGGGGCATGC 290119 29 100.0 32 ............................. TACATGGCTGCAATTAAGGAGATTCTTATCAC 290058 29 100.0 32 ............................. GCGTGGGGGAAAGTGCGGCAGGTTTCCGGCAG 289997 29 100.0 32 ............................. CGCAAAATCGCCACCGTAAAAAAAATCGCTTC 289936 29 100.0 32 ............................. GCCGCCACATTTGCAGCGGCCTTTTGGTTTTA 289875 29 100.0 32 ............................. GCGCGCGAGGCCGCGCTGCCAGTTGAGCAGCA 289814 29 100.0 32 ............................. CAAGACCCGAATCGACTGAATATTTTATTCCC 289753 29 100.0 32 ............................. GTTTAGCCAAAGTGTGCGATGGGTGGATTATT 289692 29 100.0 32 ............................. ACGGCGGGCGGCGGTGTGGCTCCAGAGTTTCA 289631 29 100.0 32 ............................. ATTGATCGCGCAGGTGGGCATAAACCCACACA 289570 29 100.0 32 ............................. CAATAATGGGTTTGCGTACCGCTATGATGACG 289509 29 100.0 74 ............................. AGGAGCCGCGCATATACGCCGATGCGGTCGGCGTGTTCCCCGCGACTCCTGAATCGTTGGCACCAGCAGAAACG 289406 29 100.0 32 ............................. TAATAATATTGCTGTCAAATCTTTCTGGTGTA 289345 29 96.6 32 .............T............... AATCAGTCGAAAACCTAATCAGGGACGATGAG 289284 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACATGCTGACCATCACCAGCGAGATGAAACAGCTTAATGGTAAAAGCGGGGTGCTGAGCCAGGTAATTACGCTGGGGCCCGAAGACGAGGTGGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTATCGGCCCGAAAGCACGCGGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGGTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAATTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTCGCCGCGGCGCAAAAAACGCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTAACCACCCGCCAGGGCAATCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACTCAAAATAACGGACTGGTGCTGGTGGATACTGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTATCGCGAATCATTAACGGCGCTGCATCATATTAAGTCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //