Array 1 23476-23885 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ001421.1 Neisseria sp. HMSC06F02 Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 23476 33 97.0 33 T................................ ATGCTCGCAGCCTTGTATAGTGTTCAAACTGGT 23542 33 97.0 33 T................................ GGTGTCGGTATGATTTCGCTGCGTGTCGGTGCG 23608 33 97.0 33 A................................ GCGCCTGAATTGCTTGCGATGGGTATCCCATCT 23674 33 100.0 32 ................................. AAATCTTCCCCCCTTATCTAACAGGGGGGGTA 23739 33 100.0 33 ................................. GGATATCTTCACCCGACCGTATTTCACAGATTA 23805 33 93.9 15 G...............................N NNNNNNNNNNNNNNN Deletion [23853] 23853 33 87.9 0 NNNN............................. | ========== ====== ====== ====== ================================= ================================= ================== 7 33 96.1 30 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTATGTTTGGACTACGGCGTACGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTCTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCACAAAGTGGAACACCACGGCGCGAAACCAGCGGTGGATGTGTTCAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACCGGGATTGTTCTTTAACAATCAGGATATTGTGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCCTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CATCGTTTCCCTAATTTATTTTTCCGCCCACATTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 25015-25181 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ001421.1 Neisseria sp. HMSC06F02 Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 25015 34 100.0 33 .................................. TTAGGATGCCTGTATCGGGGGCGAGTCCGTCGA 25082 34 97.1 32 .................................C CCCCAAGCAAGATCCAGAGTCAGAAAGCTTAT 25148 34 91.2 0 ...............................NNN | ========== ====== ====== ====== ================================== ================================= ================== 3 34 96.1 33 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAATTTCAAGGATGGTAAAAGACGGTCGGCATTTCT # Right flank : NNNNNNNNNNNNNNNNNNCCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACCCGTAACCATCGAAAGACGCGTCTCAAAATCAACCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 26357-26768 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ001421.1 Neisseria sp. HMSC06F02 Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 26357 33 90.9 32 .....TC......G................... GACTTGGCAATGATGCTTGGCTACAACGATAT 26422 33 100.0 32 ................................. GCGATCAACGCACGGCGCATCTCAAACCCCTA 26487 33 97.0 33 A................................ GCGAAAAAACTATCAGTGTGTCTGTCGCCCTAA 26553 33 90.9 17 A..............................NN NNNNNNNNNNNNNNNNN Deletion [26603] 26603 33 97.0 35 N................................ TAAACGAAGCCTTAAAAAGGGCATACATAAACGAC 26671 33 90.9 32 ......C............T............T AGACGACCTCTACCGTACTGGCGATTGATTTT 26736 33 84.8 0 ..T...C.........T.A...C.......... | ========== ====== ====== ====== ================================= =================================== ================== 7 33 93.1 30 GCCAGCTGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGTATTGTGGACGCGCATCCGCACCCCGAACG # Right flank : CCCGTAGCCGAGGGAGCAGAGGTAGAGGCGCAGGCCCAGCCATCTTCAGCTAACCATATGTCGAAACCAGACTGTGTTTTCCTGATTTAAACCATCTGTAACCATTTACTTTTTGATGGTTATGTCTGAAAAATCATCTGTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTTTTTCAGACGACTGTAATTGGATTTGTTTGGTTCTAATTAAATCAGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATACAGGGTTTGATTAGCTAGGGGCTGGATAAAAACGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGTGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCTGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //