Array 1 774049-776828 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024966.1 Megamonas funiformis strain 1CBH44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 774049 30 100.0 34 .............................. ACAAAAAACGGAACGAGATAACCACTATCTAAGG 774113 30 100.0 38 .............................. ATATGTTTGGACGACTTAGAATTTTCGGGTTTAAGTGA 774181 30 100.0 36 .............................. TCTCTCCGTTTGCGTCTGTAACTGCTGGTAATAAAC 774247 30 100.0 36 .............................. CTATTTTTATCTATGACTGCACACCCGTCATTGTCC 774313 30 100.0 36 .............................. CTTACAAGAACATAAAAATCTCCTTCTACCTGTACG 774379 30 100.0 35 .............................. TTAAAGCCTTGTTTTATACAATCAAATAAATTTGC 774444 30 100.0 36 .............................. GAAATTTTTCCACAAGCTAACTTGCGGACTTCGTTG 774510 30 100.0 35 .............................. GCAGTATTATTCATATTGCTTATTTTAAGAGGGGA 774575 30 100.0 35 .............................. TTTGGCATGTAACGGCGGATATATTTTTTATTTTT 774640 30 100.0 36 .............................. ACTAGTTTCTTTAAAGCCCTTGGGTATTTATTACTT 774706 30 100.0 35 .............................. ATTGAAGCAGAAAGCGTTTCTTATTGGGATTACTT 774771 30 100.0 36 .............................. ACAAATGTATGGTGAAAGTTTAGTTAGTAGCATAAG 774837 30 100.0 36 .............................. TGCGGATTGTTGGACTGCTCAAAAATTTGTTTAATT 774903 30 100.0 36 .............................. TGCGGATTGTTGGACTGCTCAAAAATTTGTTTAATT 774969 30 100.0 37 .............................. TTTTTAGAATAAACAGACATTAAAGAAAATAACTTTG 775036 30 100.0 36 .............................. GGTAGACGTCTTGCGTGGTATGTCTATAAAGTATTG 775102 30 100.0 35 .............................. GCAATAGAAATATTTACAATGTTGGGTGGTGTTGT 775167 30 100.0 37 .............................. GCGTTTAGTTCTTTTGTAAGTACTGTTACGTCTGGTG 775234 30 100.0 35 .............................. TAATTGTTTTCCTCCTGTTTTCTGGTGCGTACTAA 775299 30 100.0 35 .............................. GTCCATTAAGTTTGAAAACGTAGTTCCTACCGAAG 775364 30 100.0 35 .............................. TAAAAGGAGAGTAAAAAAATGATTAAAAAAGCAAG 775429 30 100.0 36 .............................. ATCTTTTTTTGTTTTGTTTTGGTTTCCTTTTTGGTA 775495 30 100.0 34 .............................. TTTCTTGAGTTTGACGTGCTGTTTGTTCGATTAA 775559 30 100.0 32 .............................. TCTGCATTTATGGCCACACCATTATTTCCCAG 775621 30 100.0 36 .............................. AGCTTTCCAGGTTTTGCACGTCTTATATATGTTCCG 775687 30 100.0 36 .............................. ATCACATTTACGCCATAGTCCATATAAATTCTAAAG 775753 30 100.0 34 .............................. TTTAATTTGTATCGGCAGATACGCTCTGCTTTTT 775817 30 100.0 35 .............................. TATATTTGTGCTAGGTTATATTTTATTGTTTCTGG 775882 30 100.0 35 .............................. TCAGCTTGCAAGGCGAGAAATTTTCGACGGGTTTT 775947 30 100.0 36 .............................. AAGCGTAGGAATATTCGGAAGAATGTTTCGTGGTGC 776013 30 100.0 36 .............................. ATAGAGGGGGAGCGATATAAAATATTACCATGTTTA 776079 30 100.0 36 .............................. GTGCATTGGTTGTAGGTTGGAAAAGTCTCGTCAATG 776145 30 100.0 34 .............................. ACAGTAACGTTAGAAGTAGACATATCTATATTTT 776209 30 100.0 34 .............................. TAAGGAAAATAGTAAATAGTGATAATCTTTGTGG 776273 30 100.0 35 .............................. CGTTTTGGCAGTACAGACGGAGCCACAAATTTTAC 776338 30 100.0 35 .............................. CTAAAAAACTCATAAAAAAAACACTCCTTTATATA 776403 30 100.0 35 .............................. TGTAAAGAAAAGATAAATAAATTTTATAGTGATAA 776468 30 100.0 36 .............................. TTATACTGCCAGATATTCCCATAGCAGTATTAAAAT 776534 30 100.0 35 .............................. TTTGGATTAGGTCAAATATCGACCGAAGCGGCAAG 776599 30 100.0 36 .............................. ATATCAGTTTTTCGATAAAAATATAAAGATTAAAAA 776665 30 100.0 35 .............................. GTATTAAATACGTCTGTAGTTGTAATTTCTCCTTC 776730 30 93.3 37 ...............T............G. TATACAAACGTTATGTGGTAATGTAATTTTGCAAAAA 776797 30 80.0 0 ............T....TAC........CA | T,A [776818,776823] ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.4 35 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : CAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGCGGCATTGCAAGTGCAGAAGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTAGCAGTAGGAGCACATAACTTCATTGATCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACACAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTACTAAATAGTCTATAAAGCTAAGCAATATAAGCTTTATAGGCTATTTTTTTATATAACTAATAAAAATCAAAATCAGCTGGTAAAATTTTTTTATATCCTTGAATAACAAGACTTTAGAAGCTATAATAAAAAAAGAAATGCTAATAAATATAGG # Right flank : AAGAACAAAGAAGAATTTTATTTTATGGAAAAATTATATTATATTGGGATAAGGAAGGTGAAAAATTGACTAAGAATAAATAAAAGGAGTTTTGTAAATGAAAAAAATTCTTATTATATTTTTTTTATTATTTGTTTTTTGTGTTCCAGTATCGGCTAATACTGTAACTATTTCTGATGATTTATTCAATGCTACACTAAATACATCTAGTCCTATAAAAAGTATATTTCAAAATAGAGCATTTCCGTTATCTATAACAACAGAAGATAATACGATTTATACTTTTAGAGCCAAATCAATTACAGATAAAATATTATCTATACATCATATTCCACTGGATATAAATAATGATAATTTTCTTGATGAATGGAAAAACAATATATTAAATAATATTAATGGTATATACTATATAGAAACTATACCTATAAAAAAGGGAATTATTTACATTACTAGAGATAGTAAAAAATCATATATATATACTATCTATATAAAAAATAATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 936426-933363 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024966.1 Megamonas funiformis strain 1CBH44 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 936425 30 100.0 36 .............................. TGCGTTTAAAGGAATATGTTTGGACGACTTAGAATT 936359 30 100.0 36 .............................. TGGAAATGTTTGGGAAGCTCGATTATGAAAAAGTTG 936293 30 100.0 36 .............................. GAAGGACATTTCATAAGAGGTGTATTTACTACTATC 936227 30 100.0 35 .............................. GCATTTATTTTCCCAAATACCTAGAGCGGATATAC 936162 30 100.0 36 .............................. TGGGTTTAGCACGCAGATTTAAACCTTTTGTTTTTT 936096 30 100.0 36 .............................. TCAATCAACAAGCGGAGATGACGTTTATGAAGAAGT 936030 30 100.0 35 .............................. TCTACAGCGTTACCTTGAGCGTAAATTTCTTTGTT 935965 30 100.0 37 .............................. TGTTTTATTATTCCACCTTTTCGAAGTCAAATGTATA 935898 30 100.0 35 .............................. GCAGAAGGCACATAAAACATACTAGAAATAACCGC 935833 30 100.0 36 .............................. AGATGTAGACGGTAATCAATACACTAATAGTGAGCC 935767 30 100.0 35 .............................. ATGTTAATGTAATTTGTTTCTGTTTCCGGAATTAA 935702 30 100.0 37 .............................. GTGTAATTATTGATGATGGGCAAACAGTAAGAGAAAA 935635 30 100.0 37 .............................. TTAAAGCCGGGAGACTTCTTGATATAGAGGTATTAGA 935568 30 100.0 36 .............................. TGCGGTTAGCCATATTTATGGCTATCGCACAGTTTC 935502 30 100.0 36 .............................. GCGGTAATTGATACCCTAAAAAATACAGTGCAGGGA 935436 30 100.0 36 .............................. AGCTAGTGGTATCGCTAGACAGATTGGTTTGTCAGA 935370 30 100.0 34 .............................. AGTGATAAGATAGAAAAACTTGTTGATGATTTAA 935306 30 100.0 37 .............................. ACAAAATTTTTAGTATCCATTGTTTTTTTCTTCCTTC 935239 30 100.0 37 .............................. AATAATAATACATGGACAATTGATAGAATTAATAACT 935172 30 100.0 36 .............................. AATGTTATATGCTAGACAAGCTAACCAACAACAAAT 935106 30 100.0 36 .............................. ACGTCTAAAACTTTTATACCGTTTCTTCTATCGGCT 935040 30 100.0 34 .............................. TTACCACAATCACAGTGGCAAAGAAATTTATAAT 934976 30 100.0 36 .............................. TATATACCGCCATCAAAGAGAAAAGAATAAAACTAG 934910 30 100.0 35 .............................. TATTTATGACTATTGATTATGTAACTGGAATTATA 934845 30 100.0 36 .............................. TACAATTAGACTTGATATAATAAAAGAAACAATGAC 934779 30 100.0 36 .............................. GATGGAGAAAGTGAAAGCTTAAATTTTAGAAAAGAA 934713 30 100.0 36 .............................. ATAAAGTATTGTTACGGAGATGAGGTTGTAACGTGG 934647 30 100.0 36 .............................. AATCGCCAAAAAGCTGTATATCCACCGCCAACAATC 934581 30 100.0 36 .............................. TAGAAATGGTGAACTAATAGCAACAACAAAAGATAA 934515 30 100.0 36 .............................. GTAGTATGCACATTAGTACTACTCCTGCAAAACAAC 934449 30 100.0 36 .............................. TTGGATGTTTTGCTGTACCTAGAAATTTTATATATT 934383 30 100.0 37 .............................. ATCTTTCTGATGAAGAAAAAGCATTTGTAATAGCTTG 934316 30 100.0 36 .............................. GATTTTTCTTAATTGGTGCCGTTTATAAGAAAATTA 934250 30 100.0 37 .............................. TAACCTACATAGACATTCTGGTCTACAGCTTTTTGAT 934183 30 100.0 37 .............................. TTTTCAATACTCTTAAGTTAGCTAGAAATGTTAAATT 934116 30 100.0 36 .............................. AATGTACCTTTACCTACTGGAGTTCTTTTTTTTACT 934050 30 100.0 35 .............................. CCTTTAAATCCACATTTAGCACATAACCATAAGAA 933985 30 100.0 36 .............................. TCAATCAGGTCGTTATTGTTTATTCTCATAAAATCA 933919 30 100.0 37 .............................. ATTTCTGGCAAGATATCTTTTTTATATTCGCCAGTCA 933852 30 100.0 36 .............................. ATTTAATATAGATAATAATACATTGATGATAGAAGC 933786 30 100.0 35 .............................. AGATGTTGATGCAGGTTTCTAAGTTTTCGGCATCT 933721 30 100.0 36 .............................. AGTCGGTACAGAAGAAAGAGAAAAATTTAGAGAAGT 933655 30 100.0 34 .............................. AATATTAAAAATAATATTGACATACCCTCTTAAA 933591 30 100.0 35 .............................. TCTTTAGAAATTTGTAAAACCATTGCTCTTCCTGT 933526 30 100.0 36 .............................. GTTAGTAGTATTAAGGCTGTTTACTATTTGTTTTTG 933460 30 100.0 38 .............................. TTTTATAAAGATAATGAAAATGAAACAGCCATACAAAT 933392 30 93.3 0 ........................C.A... | ========== ====== ====== ====== ============================== ====================================== ================== 47 30 99.9 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TTTATTATATCATAATTATTCATAAATTCTAAGACAATACGAAAAAAGATTACATATTTTTAAGTTTTACTATTGAAAATTATTTATTTATTAAATTTTGTAACATTTTAGTCATATGAAAAAAATTATAAAAAAGTATTGCAAAATACATAAATGAGCAGTATAATAATTTCTGTTATTAATGACTCACTAGCTCAATTGGTAGAGCATCTGACTCTTAATCAGCAGGTTCCGGGTTCGAGTCCCGGGTGGGTCACCATATGATTTATAAAATTAAAGCAACTATCCATGATAGTTGCTTTTTGTTTTTTGCTTAATAAAATTTTATTTACCATAAAATTACCAGCTAAAAATAAACAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAACAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCATAAAGATTGATTTTTCTAGC # Right flank : CTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTTATTTAGAATTATTTTTCAATTTCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAATCAGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCCCCTGAAAGTAGTACATCAGGCACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAAAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACGCCTGGAAGCATTCTTGATACAGCATCGATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1037583-1035973 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024966.1 Megamonas funiformis strain 1CBH44 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1037582 30 100.0 33 .............................. ATTGGTCTTGCTCATCTACATATGGCATGTACT 1037519 30 100.0 36 .............................. TGAAAAACATCTCCTTTATATAAAAATAAGGGGGAT 1037453 30 100.0 37 .............................. CACACCAATAAGTTCGGAGGGTTTAGTAGTACGGCTA 1037386 30 100.0 36 .............................. CACAATTCGCTTAATGGCTGTTTAGTAGGGATATCG 1037320 30 100.0 36 .............................. CATCGCTAATATCGAGCCACCAAAACAACCTACTCA 1037254 30 100.0 36 .............................. CCTAGCGCATTTATAAAATTCTTCACCCACGTCTGT 1037188 30 100.0 36 .............................. CCCTTTTATACCCTTGATAATGTAATCTCCAAATGA 1037122 30 100.0 37 .............................. CTTATGCTTAATTCATCGAATATTGAACTTGCACCTT 1037055 30 100.0 35 .............................. TTGTATGAATACAAACAAAAAAAGAAGGTCAAGAA 1036990 30 100.0 34 .............................. TTTCATCACCACCAATATTATATTTTTCTTCTAA 1036926 30 100.0 37 .............................. GATACTTCTTGCTGTTTATTTTCTGTTCGTCTATCGC 1036859 30 100.0 36 .............................. GTACCACAATCACATTTACATAATACTTTGCCACCT 1036793 30 100.0 35 .............................. CTGCCTATGTATTTATGATACAGAGGAAGAAAAGA 1036728 30 100.0 35 .............................. CAATATGAATATTATTATTGTTTATTAACTGTTCC 1036663 30 100.0 38 .............................. ACGACCACAAGCATTTTCTACATACTCTAAAGCATTGT 1036595 30 100.0 37 .............................. TGCAGGACATAAAAAGTAGGTAGTGCTACCATCACGA 1036528 30 100.0 35 .............................. AAGAACATGATTATTTTTTACAGTGTTGTTTTTCT 1036463 30 100.0 36 .............................. CTAATACCAACATGATTTATCAATTTTGTGCATTCC 1036397 30 100.0 36 .............................. CCTTTATGGTGTTTCTTTCTTCTATTAGTGTGACAA 1036331 30 100.0 36 .............................. ATTGTTCCAGATTTTCCTGTATAAATAATGCTCTCA 1036265 30 100.0 37 .............................. TATTATTAACTGGGCTAGCCAAAAATTCATCTTCTGT 1036198 30 96.7 35 ...............T.............. TTTCTCCTGCCTTTTCTGTTTCTTTGTAGCCTTTA 1036133 30 96.7 36 ....................A......... TATCCATTTATTACTACCTACCTTTTTATTATTTAA 1036067 30 96.7 35 ...............T.............. TTTTAATCAACATATTTACAAGAAAAACGGCGTGA 1036002 30 86.7 0 ...............T.......TA....A | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.1 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : GCTGTCAGCCCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAATTCTGCCATATTCTCATCAATAGTTCTGATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAGATTTTCTTTTTCAAATAAGCTTTTATCAATAAATCTAGTCAACATGATTTGCACATCTTGTGTCATGATATCCTTTAATAAATATAATTTTATACGTATTTGATAAACCTTCATCAAAATACCCCTTTCTTTGAATTTACCAAGTGATATATTCATCTTTATTTAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGCTGGTAAAAAATCCCTAAACCTTGATAAAATCACTATTTTCATATATAATGTATTTCATAAACCTTAATCTTTAAGGG # Right flank : AGACTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATGAGTATTTGCTCCTATTGATGTATACTGGGAAAATTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAATGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAAATTCCAGATAGCGACTAAATTCATTATTATATCATGCGGTTGACAAATCATTTTATCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAATTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 1282875-1286841 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024966.1 Megamonas funiformis strain 1CBH44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1282875 30 100.0 37 .............................. TGGGAACCTGGAGGAAACTCACCTAAAACTGTAGCTA 1282942 30 100.0 34 .............................. TTTTCGCCTGCGCATTAACCTGATTAGCGTCCGC 1283006 30 100.0 35 .............................. GAGTGATATTGCACAATCTATTCAAACACAGTTGA 1283071 30 100.0 34 .............................. CTAGCTCCTTTTACTCCATAGTTAGTAACATTAA 1283135 30 100.0 36 .............................. TAATAACTTTTTATTGAATAACTTGGGCTAGGATAA 1283201 30 100.0 36 .............................. AGCTATTTTAACAACGGTAATAGCTGCGTTTTGAAC 1283267 30 100.0 36 .............................. TATTTTTTTATAGCTGACATTATTTTTTGTGCCCAT 1283333 30 100.0 36 .............................. TGGGGAGAACCTACTGGTGCTTTATATACATTAGGG 1283399 30 100.0 37 .............................. TAATTACCCCAATAGTAAAAGTTATCTACTTTTACTT 1283466 30 100.0 34 .............................. AGGGTATAAAAGGTGAGTTTTATCCTTGCAAGCC 1283530 30 100.0 35 .............................. CCTTCGTTTAGCTGACCAGTTGCAGGAAATCCCAT 1283595 30 100.0 36 .............................. TGACTTTAAAATTTTTATATGCTAAATGACAATTAA 1283661 30 100.0 37 .............................. GAAGGTGGTATATCGCCTATTCCAACTGGACAATTAG 1283728 30 100.0 36 .............................. TCTGGTATATTTGCATTAGGTGCAATGTCGATTGCC 1283794 30 100.0 35 .............................. TCTACAGGTAAAATAACATATAGAGCTGATGAAAG 1283859 30 100.0 35 .............................. TAACTTTAGCAGCTCGTGTTGATTCTACTATATCT 1283924 30 100.0 34 .............................. TGATTGGACACATGGAAACAGCTAATGCTACTAC 1283988 30 100.0 35 .............................. AACGACCACTTAAAATAACTTTATTCATTATTATT 1284053 30 100.0 35 .............................. TTAATTGCAACGGCGGTATGCCCGTCTTTTACAAT 1284118 30 100.0 36 .............................. TGCTCCCGCTTCTCAATCTCCTTTTGCAACTGCTTT 1284184 30 100.0 35 .............................. CCAATTCTCATACCTGTATATGATAATAATAAAAT 1284249 30 100.0 36 .............................. ATCATCTTACAGTTGTAAAAGAAGTAGGAGAAAACA 1284315 30 100.0 37 .............................. AACTTTAAATTAAATTTTCTTAAAATACTCATATAGC 1284382 30 100.0 36 .............................. TTTAGTGGTTAATATAATTATACCTGCAAAAATAAT 1284448 30 100.0 35 .............................. TGGGGCTATTGCAAGATTTTTCCCAGAAGATACAA 1284513 30 100.0 36 .............................. CTGTTTTGCAATAACATCTGTAGCATTTTACATTCT 1284579 30 100.0 36 .............................. TGCTAAACTTAAAGTATTCTTCATCTTTGTATTCTT 1284645 30 100.0 37 .............................. AGCCAAGCTTCTTCATCTTTCATTTGCTCGGCTGTCA 1284712 30 100.0 35 .............................. TGCACTAGAGGGATTGGGCGAAGAAGGTTTGCCGG 1284777 30 100.0 36 .............................. CCTGTAGCTTGCGGTAAAATACTTTGTAATTTAAAA 1284843 30 100.0 36 .............................. TCTGGAATACGTGCTAAGCATTGTTGCATTAAGCCG 1284909 30 100.0 34 .............................. GATTGTATATTAGTAACAACTATATCCTCTGTGT 1284973 30 100.0 34 .............................. GAAGAATTAATAGCATATAAAGTAAATAGTTGCA 1285037 30 100.0 34 .............................. GGGAAATAGTAAGTTCCGTACCAGCCATTGATAA 1285101 30 100.0 37 .............................. GTTCCAAAGACTAATCGAAAGCACTCTTTATTTTGAA 1285168 30 100.0 35 .............................. AGAGAACGATTAACACTAGCACGACAAGCACTAGA 1285233 30 100.0 35 .............................. ATAGCTACAAGGTAATTCATTAACCTTATTGCTAT 1285298 30 100.0 36 .............................. TTTTCTGGTGGTGTAACAGTTGTAGGTGTGCCAAAA 1285364 30 100.0 36 .............................. CAATAACCATTTGAGCGTGCATACTGTTCTAGCTCT 1285430 30 96.7 37 .................A............ ATTCTGTTTTATTGTATAGATGTAATGTCTTTTTTAT 1285497 30 100.0 35 .............................. ATTTGCTTATCTTTAAAATAAGTTATTGAGTGTTG 1285562 30 100.0 35 .............................. AAAACAAAATAACAATGCTCGTATGGAAGAATTAT 1285627 30 100.0 35 .............................. TGGGCAACTACTGGAAAATTAGTAAGTTCCGTTTT 1285692 30 100.0 37 .............................. CATAATACTGCCTTATCGTACCACTCTCTGTAGCGTC 1285759 30 100.0 37 .............................. TATTGTTGCTTAAAAGTTTCGACCGCTGATTTAGTAC 1285826 30 100.0 36 .............................. AACTACTTATATAAATCCCACCTAAAAGGACTGGGG 1285892 30 100.0 35 .............................. TGCATCTGCTTCTAATTTTCTAGCTTCTGGACTAA 1285957 30 100.0 36 .............................. ACTAATACAGCAGGCATAGTAGTATGTTTTAAAACT 1286023 30 96.7 36 ................T............. TCTATTATTCTACATTTGACCATACCAATCTCTTTA 1286089 30 96.7 37 ................T............. TGGTATTTTTATCTGTTCCATTTTCTACAAAAGGCAA 1286156 30 96.7 36 ................T............. TTTGCACATATCCATTTTATTATATCTTCTTCGTCC 1286222 30 96.7 36 ................T............. AGCGATAAAAGAAAATGCAGTATTATTTATAATTTT 1286288 30 96.7 37 ................T............. AGATTAAGGCAAACGATTAATAAATAAAATTTATAAT 1286355 30 96.7 35 ................T............. CTAATTTTAGGAGCTGAAGCAGCTGTGTTATTACC 1286420 30 100.0 34 .............................. TGGGTACTAAATCCATAATCAACTTGAAGTTTTG 1286484 30 100.0 36 .............................. CCGTTAATAAAAAAGAGATATAATCATTGGATTATA 1286550 30 100.0 36 .............................. ATGTAGCCAAAACGAGTGATATTTGGTCCCATAACT 1286616 30 100.0 36 .............................. GATTTTAGTCTTGCTTGTATTAGATTTATGGGAGTA 1286682 30 100.0 35 .............................. TATTTTTTATATAGCTCTTCGGGGAAAGCATAATA 1286747 30 100.0 36 .............................. AGAATAGCAACAGATATTGCAAGTGAAACTGGCATG 1286813 29 76.7 0 ...............TT.-.A.....CT.A | ========== ====== ====== ====== ============================== ===================================== ================== 61 30 99.2 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGTCAAAGATATTTTATCTCTAATTTTACCAGCTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AAATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTGCCAAAAACATAGAAAGAAAGGCTTAAAATCATGCCACAGACAACAGCAAGACCCATACCTTTTAATTGTACAGGACCGATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCAACTTTTTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAACAATACAGAAATGCCGCCCATTACTGGTACTGGAATAGCATGAATAATAGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCGATTACCCATACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCACCATAAGTAGTATTAGGAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 1379783-1381124 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024966.1 Megamonas funiformis strain 1CBH44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1379783 30 100.0 36 .............................. CCATTAAAACTTATTTTATATATTGCATCTATACAT 1379849 30 100.0 36 .............................. GCAGACTACTGAAAAAAGTTCAGTCTATAATTCTAC 1379915 30 100.0 36 .............................. GGTAACCAATCCCCATTCCATAACTTTAGGCTATTT 1379981 30 100.0 36 .............................. GCAGTGAATAATACACCTTTTTCACCCGTTAACTTA 1380047 30 100.0 36 .............................. TGTATCTGTAGAGGGTGTAACACGTCAACGAGTATA 1380113 30 100.0 35 .............................. GATAAATATTACAGCACCAAATGGAACAGAGCCAA 1380178 30 100.0 36 .............................. CGTGTGCTATTTTCTGTTTTTGGTGTACTTATTAAA 1380244 30 100.0 35 .............................. AATTTACTCAAAAAAAACATAATTACTCCTTAATA 1380309 30 100.0 36 .............................. TAAATTATATCTCTATATTTCCTTTCTATATCTTCT 1380375 30 100.0 36 .............................. TCTATCATACAAGTAGAAAATATATCACCACACAAG 1380441 30 100.0 34 .............................. AAATTTTTATCTAATTGATTAGTTTTAGATATGA 1380505 30 100.0 36 .............................. AGGCTATATTGATGAACTACGTTCGGAATGGGGGAA 1380571 30 100.0 36 .............................. TTACCTTGCTCAATTTCATCTATTTTGTCAATTATT 1380637 30 100.0 36 .............................. TTTAGACAGTATGAAAAGGCTGTCTTTTTTCTAATA 1380703 30 100.0 36 .............................. AAAACTTCAAGATGAATACGCAGGAGATAAGTATTA 1380769 30 100.0 35 .............................. AAGGAAAAGCATTAAAAAAAATAATTACTGATGTA 1380834 30 100.0 36 .............................. CTAGATATCTAGTGGCTACCAATGAGGACATAAAGA 1380900 30 100.0 36 .............................. CTATCTGACTCTTTAAACTTTACCAAGACAGTATAT 1380966 30 100.0 35 .............................. GGAACTAAGTCCCTTGCAGTTACTGTAGGGACTTG 1381031 30 100.0 34 .............................. TATTTACCACTCCTTAAACCATTTCATGCACCCT 1381095 30 93.3 0 ................T.........T... | ========== ====== ====== ====== ============================== ==================================== ================== 21 30 99.7 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAGGTTCGGGTTGTGCTATTTCCCAAGCTTCCACAGATATCATGATTGATTTAATGCTTGATCAACCAATCGATAAAGCCAAAGAATTATGTCGTTTATTTATTGGCATGGTTCAAGGCACAATCACTGATGAAAAAGAGCTTGCCCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTCAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAACTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTTATCTAAAAATTTACCAACCAAAATCAAGAAAAATCCCGCTAATCATTGATAAATAAATTTTTTCACTAAATCCCTTCAAATCTCGTTATCGCTGGTAAAAAATAACTAAAATCCTTGTCCATTAATACTTTTAATAGTATAATAAAAATCATAAGGATTAATTTTTCTAGC # Right flank : TTAACTCTCTAGCATTAACGTAACAATGAAAAAAGCCTTAGGAACTGACCCTTCCTAAGGCTTTTGTGCGTCATCATGAGTTTGATTTCGTCTATACTTAGTATAATATATTACATAGATTTTGCAATACAGAGCTTATTATTATCGTGCAAATTAGAAAAATAGACTTATATCTTTAATTCTTCTATATCAGCTAAAAGCTTATCTAATTTTTCTACAGATATATAATGCAAGAAACCCCATGAAGGTGCGAACTTCATGGGGTTTTGCTGTCTATATGACTCTTTTGTTATGTTTTGCCTATACTTAGTATAACACATTATTTAACTTTAACAAGTGTTATATTTGAATTTACAAATTTTTATAAAGCAAAAATTTAAATTTATCACATTATTATTTTCTCACAAAAGTCATAATTATAGTATCCTCACCATAATTATGTTTCATCTTTTCATAGTCTTTAGCCTCAATAGGTGTTATAACTATAGTCTTTAAGCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 6 1424005-1430029 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024966.1 Megamonas funiformis strain 1CBH44 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1424005 30 100.0 34 .............................. ACGTTGTTAAATTGGGGATATAGAGTTTTAAAAT 1424069 30 100.0 35 .............................. CTCGTGGATTATCCCACGCAAAATGAAAAGCTTTT 1424134 30 100.0 36 .............................. GAGTTAATTCGTGCTAATTCCATTAATCTTTTATTA 1424200 30 100.0 37 .............................. AAGTATGACGCTTGAAAGTTACGATTATAGCCTTAGA 1424267 30 100.0 36 .............................. CATCTCTGGTTTCAGAAACGAATAAGAGCCCCTTCT 1424333 30 100.0 36 .............................. GCGGAGTAATAAGCGCACTATCACTTGCCAACTTAG 1424399 30 100.0 37 .............................. TCAGGGTTTTCACGCTCTCGTAAGATTGCATTCCGAT 1424466 30 100.0 35 .............................. CGCTCTCGTAAGATTGCATTCCATTTTCTGCGGTA 1424531 30 100.0 38 .............................. ACAAAAAACGGAACGAGATAACCACTATCTAAGGTGGT 1424599 30 100.0 38 .............................. ATTAATATCATATTACCGCCACCAGAAAATTGACCTTC 1424667 30 100.0 36 .............................. GTCCAAACATATTTACCATTGCTTACTAAATAAACA 1424733 30 100.0 36 .............................. TGGGAAGGTGCTTGTCTAATTGGCAAGCACCTTTTC 1424799 30 100.0 35 .............................. TTAGACGGTACAATTTTTTATTCTAGTGTTGATTT 1424864 30 100.0 35 .............................. TAACTTTCAAGCGTCATACTTTGAAATTCGCTGAA 1424929 30 100.0 36 .............................. TTCATGTTTTCTTACCTCCTTCTTAGACACCTGCAC 1424995 30 100.0 36 .............................. AAGAATCCAGATAATACACTATCTCCGCCGTTAAGC 1425061 30 100.0 36 .............................. TTATTCGTTCTCCAAATAATTCAAATAGTTCTTGCA 1425127 30 100.0 37 .............................. GAGCTTCTGCTCTTGAAAAAAGCTGGTGTAGTGAAAT 1425194 30 100.0 37 .............................. CCTTTCATATAAGGATTTGTACTGTCCGGCTGCTGCC 1425261 30 100.0 36 .............................. GTTGTTTCTGCTCCCATAGAACAAGGTAGCTTTTTT 1425327 30 100.0 36 .............................. TTTGTATGAAGAATTATCTAAGCAAGACGAGGAAAA 1425393 30 100.0 36 .............................. ATGCTTTTATAGGGATTAAAGATATAGGAGATAATA 1425459 30 100.0 34 .............................. AACCACAGTATTAGAAATTGAGGTAGATGATGAT 1425523 30 100.0 36 .............................. AGGTGCAATGATTGGTGGCGATTTTGGTTTTGTAGA 1425589 30 100.0 36 .............................. TAATGGTTTTGTAAATCTGCGTCCCCTGTATTAAAT 1425655 30 100.0 37 .............................. ACGTCATCTGCATAGTTAAAACCTATGTTATATTTAT 1425722 30 100.0 36 .............................. AGCGTTAGCAGGTTTTTATTGCTAACGTTTTTTATT 1425788 30 100.0 36 .............................. TGGCTCAGACGCATATTAGATACGGTGAGCAAGAAA 1425854 30 100.0 35 .............................. GTGTATCGAAAATTAAGTTCCCTTTTATTTTTTTC 1425919 30 100.0 37 .............................. ATACATCTTTCGATTGCTCCATATAATCCTTTGCTTT 1425986 30 100.0 36 .............................. TTTTCCCCAGCAATTCCAATCTTTGCCCAACACGCA 1426052 30 100.0 36 .............................. CAAAAATGCGTTCTGAAGGTAGACCAGCAATAACCA 1426118 30 100.0 36 .............................. TTTAAGCTAGTATATTTTCCAACCTCAGCATCAATA 1426184 30 100.0 35 .............................. AATTTGATGATGAAAAAGTATTATAAATCCTTTTG 1426249 30 100.0 35 .............................. TTTTATTGTTATATATGCTTGGTATTTTTTTCTCC 1426314 30 100.0 35 .............................. TGATTTACCTTTTATTCCTAAAGCACTTATTGGGA 1426379 30 100.0 35 .............................. TTTACAGGATTTAACAATGGCTCGTAAACATCTTT 1426444 30 100.0 36 .............................. ACGCCCAAACGATGAATTGCCCATTTAAGCTGCTGA 1426510 30 100.0 35 .............................. CTAGATTACTTAACTAATCCATCTGGATTAACTTA 1426575 30 100.0 37 .............................. AAGTTTAAGTGATAAGGGTATACCAGAATATAGAGCA 1426642 30 100.0 36 .............................. GTACGCAAGTTGCTATCTTACGTAGACGCCCCGAAG 1426708 30 100.0 37 .............................. TCGAGTCCACGAAGGATTATTTTCTGACCTGTTGGTA 1426775 30 100.0 36 .............................. GAACGCATTTTTGCGACATCTCCGTCTGTCCACTGT 1426841 30 100.0 36 .............................. TATATTTAGGAGGAGAAAACTTGCAAAAAATTTTAA 1426907 30 100.0 36 .............................. ATTTTAAGGCACCTATTAGCCCCTACAAGCCATTTT 1426973 30 100.0 36 .............................. ATATATTCATTATTTTTTGTCCCACCTTATTTTGCT 1427039 30 100.0 36 .............................. CTTTATATCCGATTATACCACCATTTTTATCTAATA 1427105 30 100.0 39 .............................. AGTGCCTGTTTTTTGGTGTATAATAGTAATAATCAAATT 1427174 30 100.0 37 .............................. AGTTGCGGTTTAACTCTCTATTTATTTGTTTACATTA 1427241 30 100.0 36 .............................. GTTCCTTTCTTTATCTTATGTATTTATTATAGCATA 1427307 30 100.0 37 .............................. TTTGGTTCTATCATTCTTTTACCTCCAATTCATTACA 1427374 30 100.0 37 .............................. TACTCATAAGCTATAGCACTAAAAGTTTTTTCTCCAA 1427441 30 100.0 37 .............................. AGCCTTAGGTAGTGGCAAGCTACAAGGTGATGAATTT 1427508 30 100.0 37 .............................. TTTCATCATCAACGTTTTTAACAAATGGGTGATTACT 1427575 30 100.0 36 .............................. ACGAAAGAAATAAGCAAGACACCTTAACAAAAATAA 1427641 30 100.0 35 .............................. TATGCATCATATCCACCAAATACACCATAACCTTT 1427706 30 100.0 36 .............................. TAGCTTCTAGTACTTAATTCACCTTCGATAAGTACT 1427772 30 100.0 35 .............................. GCAATTTCTTCTAGTGATGTTACAGTCTGAATATC 1427837 30 100.0 36 .............................. GCATTTATTACAGTTTGCCTATTATAAGCAAGTTTC 1427903 30 100.0 36 .............................. CAGTGGCAAAGAACCTTATTACCACCTAATTCCTTT 1427969 30 100.0 36 .............................. ATCGCCACCTAAATCACCCATTATTTGTCTTACTAT 1428035 30 100.0 36 .............................. TGCAGATTTAATGCGTAGTATTGATGGCTATGTACA 1428101 30 100.0 36 .............................. TGGCCAGTATTAGCAGTAGCAGCAATAATAGGTGTA 1428167 30 100.0 36 .............................. TTGAAGCTGTCCATTATCTTTTTTAGATATGGAACA 1428233 30 100.0 35 .............................. GAAAGACATATTAAAGTAATATGTAAAACATTTAA 1428298 30 100.0 36 .............................. TTGTTCGTTTTCCTCCGATTTCATTACATCATGTTG 1428364 30 100.0 36 .............................. GATAATGCAGGTATAAAACATATAAAAGAATATTTA 1428430 30 100.0 36 .............................. ATAAAACATCTTCTAAAGATTTAACACTTCAAGAAG 1428496 30 100.0 35 .............................. ATAAGAGATAACAAAATCTGGTATTTAGTACCAGA 1428561 30 100.0 34 .............................. GAGAAAACTTTAATTTTAAGTCCATATTATTTGA 1428625 30 100.0 34 .............................. TTTGATTACCGCCACTTACAACGTTATTCCCATC 1428689 30 100.0 35 .............................. TTGTTATAAATTATACAATTTTTATTTGTATTTTT 1428754 30 100.0 36 .............................. TTAATAATGACATCTCCCTATGATATAATTTAACTA 1428820 30 100.0 34 .............................. TATGGATTAGGCTGATTATAAGAATAAAATCCTT 1428884 30 100.0 36 .............................. TACCACAAATAAAATATTAAGGAATGATATTATGGA 1428950 30 100.0 36 .............................. AAACCTTTGAAGAAAGTAGAGATAGTGATAGCTGGA 1429016 30 100.0 36 .............................. GTCTATCTTCTGATGACGAAAATAAAAAACCTTTAG 1429082 30 100.0 36 .............................. AGCTTATAATGTTCTCCTATTTTTAGAATAACTCCT 1429148 30 100.0 35 .............................. TGAGTAGCTACAGTAATAAACTTTACGATGAAATT 1429213 30 100.0 34 .............................. AGTATTATATCACCTTTCCTTGAATAATGTTTCA 1429277 30 100.0 36 .............................. TTGCATTTTTGCGGTACAGGGGGAATATTTTAATAA 1429343 30 100.0 36 .............................. TTATATTCTGGATATACTTCGCACAACTTATCCTTA 1429409 30 100.0 36 .............................. AAAGATTAACGTTCTTGATGTTAGAGAGGGCGAACT 1429475 30 100.0 36 .............................. ACGTCTGTGCTAAAGTTTCACCTTTATTGATATAAA 1429541 30 100.0 37 .............................. ATTAATAAATCGTTTCGTTTCCCCTTTAGTACATTAG 1429608 30 100.0 36 .............................. TTAGACCTGTGAAACATATTATTCCCCATTTTTCCC 1429674 30 100.0 35 .............................. TAACTAGGAGGGGTGAATATGCAAACAATACCACT 1429739 30 100.0 36 .............................. CCACTTTTATTATTAAGTACCTGCTGTTTTTAGTGT 1429805 30 100.0 35 .............................. ATGTTATCTATGTCTTTTGTTAATCTACCAACACC 1429870 30 100.0 34 .............................. TAAATTTCCTTGCCTAGTGAGTCGGTAACACCCG 1429934 30 96.7 36 ................T............. TCATCTTGCACGTAAAAGCCAAAAGACATTTTGCTT 1430000 30 76.7 0 ......A.........T......CAAA..A | ========== ====== ====== ====== ============================== ======================================= ================== 92 30 99.7 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTCGTAATCAAAGGCGGTAAAGAAAATGCTGTTAAATTCATGGATTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGCACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTCGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTATTTTCCCAGCCATTTTTTAGCTTAAAACCTGAAATCCTTATAAATAAAGGATTTATTAAAAATCAAAAAATCAATCTCAATCGCTGGTAAAATTTTTCATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTATTGATTTTACTGGC # Right flank : ATAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGCAAAGTGGAATCTTCGCTTGTTGCACCTGCTGCTCCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAACTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAGCCCATAGATGCACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCAATTATTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //