Array 1 98465-98829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRU010000007.1 [Ruminococcus] lactaris strain MSK.18.24 KDADDGIH_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 98465 36 100.0 30 .................................... CACGCCCGATATAGGTTGCCGGGTGTACGC 98531 36 100.0 30 .................................... ACTAATGCATACTTATCGCAATCAGATATG 98597 36 100.0 29 .................................... AAAAATCACAAGAATCACTCCAAAGCGGA 98662 36 100.0 30 .................................... CGAGATTGATTCGTTCGTAATGCTCACGCC 98728 36 100.0 30 .................................... GATCTAATCTGTTTCGACCATCATTTAAGT 98794 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AACTGATCAGCAAACTTTATATGGAATTGGAAAAGCTTACTGCGGACGAACGATTCTATGTGAAAACCCAGGAAATGAAGCAATATCTGCAAGAGTATTTATTACAGCTTGAACAGGAGACAGACTATATCCTTGATCTTGCGGATGAAATAGATTTTGCCTCATTATTTAAAGCTTTTGGTATTAAATATGAGGTACTGGAAGAAAACTTCTTAGAACGTCTTGTGAGATATATGCGAATAGTGGAACGATTATTAAAGAAAAAGCTTTTTGTATTTGTTAATTTGCGAAGTTATTTATCAAATCAGCAGATTGATGAATTAATAAAAGAAGCGACGTATCAGGAAATTCAGCTTTTGTTGATTGAAACCTGTGCGAGAGATTGCATTGAGGGTGTAACAAGGTATATTATAGATAAAGATGGATGTGAAATATAACATCCTAACAGTTTGAGTACCTGTATTTTATGCGAATGATGGCATTTCATTTTTGAATTTGAG # Right flank : GTGGTCAAAGAAGAAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 664-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRU010000065.1 [Ruminococcus] lactaris strain MSK.18.24 KDADDGIH_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 663 32 100.0 34 ................................ ACCGATTTAGTGTATTTTAAAGCAAAAAAATAAG 597 32 100.0 35 ................................ CATCCGATCAGGATATCACGGATCTGATCTGCTAT 530 32 100.0 34 ................................ TCGGAAAATGGGTGGCTGCTGATGGACTTATTTA 464 32 100.0 34 ................................ TGTCCACATCCAACACACTGGATGTGTGTCAGTA 398 32 100.0 35 ................................ GGGGTCAGTACCTGGGCGAGTCGATCACGGCAGAA 331 32 100.0 34 ................................ TGCGGGCGAACAACTTTCAGACCCGGGCGAATCA 265 32 100.0 35 ................................ CGAGATAGATTCCAATATGCCCATTCATCCATACT 198 32 100.0 33 ................................ CAAGATTTTATTACATAAATCAAAAGAAATACG 133 32 100.0 36 ................................ ATTGCTACTGCACCAAGAACAAGACCGAGGACAGTC 65 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 35 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTCAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGGAATATTGCA # Right flank : TTGTCCACATCCAACACACTGGATGTGTGTCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 1-495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRU010000023.1 [Ruminococcus] lactaris strain MSK.18.24 KDADDGIH_23, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... GTGGTCAAAGAAGAAGAGCAGGGACGGGTT 67 36 100.0 30 .................................... AACATCGAAATCTTGATAGAACCCATAATT 133 36 100.0 30 .................................... AGTTTTGACAGGAACAAAGAATCTCCCATC 199 36 100.0 30 .................................... CAACCGATCCATTCGCATCTGATACAAGCT 265 36 100.0 28 .................................... GACGGGAAAGCTGTGGATGCAGAGACAG 329 36 100.0 30 .................................... GTGGTCAAAGAAGAAGAGCAGGGACGGGTT 395 36 100.0 29 .................................... ACAAAATTCTCGGGAATTTTAAACCAGCG 460 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : | # Right flank : CTAAGCACAGGGAAATCATCAAAGATTCTTATACATGGAACTTCAAAAACGTGGCATATTCCGCATGATGCATGGAAAATTATAAAAGAAAATCATTACGAGTGGACAGCTCATTCCCATCCGACAATGACGAAAATAATTGCGTCACCGGAAGATCGAGAGACGTTAAAGCTATTTACCTGGCAAGAAAAAAGTATTATAATAGATTTGAAAGGTAATACAAAAGAGTTTACTGCAAGCACCCAGGATTGGATCAATGAGATATTAGGAGTGACAGGTTATGATAAGCGAGAAAAAGGCAACGAATATAGCTGGCCAAAGGCTGATTGAAAAATATGGACGTGCTTATGTTGAAAAATACAAGAACCATATTGGAATTATGTGGGAGAAAAAGTGTGGAAAATTAATAGTTGATTTTGACAAATACCATAAAGAAATAAATTCAGTGCCAGTAACTGATACAAGTGATGGGATTACGGTGAATGAAGACAATTTCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 6045-5221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRU010000075.1 [Ruminococcus] lactaris strain MSK.18.24 KDADDGIH_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6044 32 100.0 34 ................................ ACAGGAGTTGAAGAATACCGGAGCAGTCGGAGCA 5978 32 100.0 34 ................................ CATCTTGGAAATGTGGAGTGAAATAAACAGAGCA 5912 32 100.0 34 ................................ CGTAAACACCATACGCTGGATGGCTGCCTGCTTC 5846 32 100.0 34 ................................ GATTGTAAACGCTGCCTTTCCCTTCGGGCAGTTT 5780 32 100.0 34 ................................ CACGGAAGATTGCCGGAATCAACAGCAAGCAGGC 5714 32 100.0 33 ................................ GTCCTTTTGAGACTACTTTGTATGGGGTAACGA 5649 32 100.0 35 ................................ ATATTTAACAATCTGAGACAGAAAATCAAAAATCT 5582 32 100.0 34 ................................ ATATATATCATAGGAAAGGAAGGAAAAGAAATGA 5516 32 100.0 34 ................................ TTCCAACTGCTCCACGATCCGCTCCATAGGCTTG 5450 32 100.0 34 ................................ GTCAGACTCATCACTGCACCCTTTGCCCCATATA 5384 32 100.0 34 ................................ AGTTTGCATCTAGCGGAACAACTGTACCAACACC 5318 32 100.0 34 ................................ ACTTACCCGGCATCCTGTAGATAGCAGCAGCTCT 5252 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 100.0 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : TTGCGGAAGTGTGGATTGAAATTGTCCACATCCAACACACTGGATGTGTGTCAG # Right flank : ATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGTAATATTTCAACGCAGCATGATAAAAAATAGAATAGTAGTGATAGAAAAAAGTACAAATAAGAATCGAACGTTTGTACTTTTTTCTTGCGTTAATCTATATACTTTCAAAAATTTATTTGATATAATAGGGACTGTTACAAGAACAAACAGTAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA //