Array 1 13227-12728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHFB010000011.1 Enterococcus faecalis strain MEZEF132 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 13226 37 100.0 29 ..................................... ACAATATATAAACCAAATTTAATACGGTT 13160 37 97.3 29 ....................................A AAAATTGCAAACATCAATCAACGCAGTAT 13094 37 100.0 29 ..................................... AACGCCTCAGCAAGATATCCAATATCGGT 13028 37 97.3 29 ....................................C AATTCAGAACGAATCGCAACTAAAAGAAA 12962 37 100.0 29 ..................................... GCTCCTTTTCTATTAATTTTCTTAGTACA 12896 37 94.6 29 ..............................T.....A TTAAACAAAGTACAAATCCATATATATCA 12830 37 97.3 29 ....................................A ACCACAACTGTTGTTGTCACTACTGAAGA 12764 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 8 37 98.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTAACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : TGCGGTATTATTCGTAGGTTTGCTTTTTTGTTTTAGAATCATGTTGTTTGGTTTTCGCAGATACGATATGATTGATGTAAAAATATCGTTGATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTACTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 944-676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHFB010000129.1 Enterococcus faecalis strain MEZEF132 129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 943 34 100.0 44 .................................. GATTTAATACAGAAAACGTAGAGAATTTAAGTGAGATGTTTAAT 865 34 100.0 44 .................................. GATTTAATACAAAAAAAGTAAAATTAACAAGCATGATGTTCGAG 787 34 97.1 44 ...............G.................. ATTTTGATCTGAGTTCCGTAAAACATACGTATAATATGTTCAAG 709 34 94.1 0 AA................................ | ========== ====== ====== ====== ================================== ============================================ ================== 4 34 97.8 44 GGCTGTTCGTCTTTAAAAAGTTTAGATGTAAGTA # Left flank : CAACAACTGAAACACAGACGCAACAGGAAACAACAAATTCGACAACAGAAGCCACTTCTAAAGAAACGATGCCAGAAGCTAAAGCAACAGCTGAACAAAACTGGTCTGCTACATGGGATCCATATCATCAAAGCTATCACCTAGAACAGTATCTAGGTACAGATCCTGCGATTGTCGTACCTAATGAATATAATGGGAAGCCAACGGAGATAAGGTGTGACAACGGAATTTCATGCCAAAAAATAAGTAAACATGATGTAACATCAATTACATTTTCAAATGAAAATGGAAAAAAAGTAAAATTAGAACCTACGACTCAATACACTGATTTTACTATGAGAGATCATTATTTATTGAGATATTTTGATGGTTCTGGCTTAGATATTTCTCGTGCTCATAAGTTGCACATGGCCTTTTATGAGGATAGGCAGCTAACTACAATTAAAGGTCTAGAAAATTGGGATACAAGCAATATAAAAACTATGTATGCTATGTTTGTT # Right flank : ATTTTGATCTGAGTTCCGTAAGCTTTGGATATGATATGTTTAAAAACTGTATTAATTTACAATTTTTTGATGCAAGGAATTGGAATATTCCTTCTACAGTAGTTGATATTTCTAATATGTTCTCTATAGATAATGGAGAAGCGCCCTTAGTAATTTTAGGAAATGATGACCGATTGATACAAGGGACTACAAAAAATCGCTATCCTGGAGGTCCAAAATTCGTTGCGGGAAATAATGGGTATTTTGGAACGGTCGAAACTAAAGAAAAGTATTATTTTAACATGTTAGAAAAGGATCCAAAAAAACTAGAGGTTGCCTCATTTGAAGCTTTTAAAACAAAATTAATTCCTGAAGTAGTAGATTCTACTACTAAATTTTTAAGATGGGATGGGGATAAGATCACTACTAGTGAAGAGTTAGTAAAAGAGCACGTTTACCAAGCAAAATATCTGTTTGATATAACTGCCCCAGGAGATGGGGATCAAAATGTATTGCCTTCA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGTTCGTCTTTAAAAAGTTTAGATGTAAGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 13244-13412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHFB010000041.1 Enterococcus faecalis strain MEZEF132 41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 13244 37 100.0 29 ..................................... GAAATATATGAAAACACACGTTGATGGGT 13310 37 100.0 29 ..................................... TCGATATATTCTGCACCATAAAGATCCCA 13376 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACC # Left flank : ATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACATTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATAGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTTAAAAACAAACTATCACTACAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //