Array 1 59071-61806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHF010000017.1 Clostridium perfringens strain 1P32 NODE_17_length_66746_cov_73.1418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 59071 36 86.1 29 A...C.TA..A......................... CAGCTGAAGAAAAAGAAGCCATAAGGCTT A,A [59073,59083] 59138 36 100.0 30 .................................... TAGTTGAAGTTCTTATACCATCTACAACAT 59204 36 100.0 30 .................................... TAGTGAATACGAGGTATCATACCCAAGCTA 59270 36 100.0 30 .................................... TCTAAGTTGTTGAACCCGTTAAGTTCTCTG 59336 36 100.0 30 .................................... GAAAAAATGAAAGAGGGCTTATATAAAATA 59402 36 100.0 30 .................................... CAACATAGTTGGTAAATCTAACTCAGTTAT 59468 36 100.0 30 .................................... TCAATGGGCTAAGGATGAATACGAAGAATA 59534 36 100.0 30 .................................... TCTCTATTCTTTTTTAAGTAAAGATTGCTT 59600 36 100.0 30 .................................... ACATCAAGTGGTGTATCCTCAAATCCACCT 59666 36 100.0 29 .................................... ATATATACCAAGCATTGATGCATGTTGGT 59731 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 59797 36 100.0 30 .................................... TTACTCTTAGTCGCTGATCGTTCATTCACC 59863 36 100.0 31 .................................... AGTTTACACATAATACTTACAACTAATCCAG 59930 36 100.0 30 .................................... GACCTTTCTAAAGGTTTTATAACAGTTAAC 59996 36 100.0 30 .................................... TGATGACGATGTATATGCTTATCCAGATAC 60062 36 100.0 30 .................................... TGGTATGAGTAGAAGTGATTTACTATTACA 60128 36 100.0 30 .................................... CTATTGCTAAAGCTATTGCAGAAGGTTTAT 60194 36 100.0 29 .................................... GGAAAAATAAAAGCCCCCTAGTAAAATAA 60259 36 100.0 30 .................................... TTAGGAGGTTTTTTATATGGAAAACAATTT 60325 36 100.0 30 .................................... TTACCATTTCCGTTATGAACTGAACTCCTT 60391 36 100.0 30 .................................... TCAGCGAACAACTTCAAGGGAATATAATTA 60457 36 100.0 30 .................................... CACCAAAGGTATATTGAGAGAAAGATAAGG 60523 36 100.0 30 .................................... CTTGGGGGTGGATTAAAAGCTCAAGATGCT 60589 36 100.0 30 .................................... GATTTATTAATTCTAGGCACACAATAGAAA 60655 36 100.0 30 .................................... TGCTGCACTAAATATTACCCCTCCAAGTCC 60721 36 100.0 29 .................................... AAAATGAAAGTATAAATTTAAATATTTAT 60786 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 60852 36 100.0 30 .................................... ATTTATTCTGATTAAACCCATCAAGGAATT 60918 36 100.0 29 .................................... GAAATGGGTTCTTTGTGTACTAAAATAAG 60983 36 100.0 30 .................................... CAACTTTAGACAAGGGCAAGTCATAAGCTT 61049 36 100.0 30 .................................... TCATGCAAAGATGAAAAGACAATAATTAGT 61115 36 100.0 30 .................................... TATCTATTAATGTTTGATAATTTAAAACTT 61181 36 100.0 29 .................................... TGCTTATAAGACAAGAAAGAAGAAAAGTA 61246 36 100.0 29 .................................... TGATGGTAAGTGGCAAAATATAAAAGATG 61311 36 100.0 30 .................................... TATGGAATGAATCCTAATTTCAATCCTAAC 61377 36 100.0 29 .................................... CTTCTAAAGCTCCTAAATTACTGTTAGCC 61442 36 100.0 30 .................................... CTTATCAAATGATTATCATATGAGAATACA 61508 36 100.0 30 .................................... CTCCAGTTTATTATTAATACCTCACCCCTT 61574 36 100.0 29 .................................... TAAGGGCGTGTGGCTGTTGTCTAAAATCC 61639 36 100.0 30 .................................... GGTTGAATTAACTCAACATCTGAATTTAAA 61705 36 100.0 30 .................................... CATATTCAACTTGTACCCTTATACAAGATG 61771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.7 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //