Array 1 108-440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVL010000009.1 Campylobacter concisus isolate 2010-43100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 108 37 73.0 40 TCA.TGTT..............TT.A........... GAAGCTTTTGGCTCTGTTTGTCCTCCAGCTTGCTCATCTT 185 37 91.9 39 .............C......T..T............. TTCATCTCTGCCACGTCGAGTAGTTTCCATCCGACATAA 261 37 100.0 33 ..................................... TCGTAATAGTCAGCGTGTTTAACTTCTCTTGCT 331 37 100.0 35 ..................................... GCATCGTAGTGAAGCATACTCTCGTTAAAGTCATT 403 37 78.4 0 ..........C.C.......C..C.........GCGA | A [434] ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 88.7 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GTGCATACCTTTATCGCTCTTATTTTTAATTTAAATTTCTATCTTTTTGGCTAAAATTTCGAAAATTCGTGATTTTAAAGATATTTAAGATAGGTTCTTTTTACTTAT # Right flank : ACCCATACCACACTTAAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGCTACTTTAAGCTCCGCATTTGACGAAATTTCTGCAAATTCTTTGGGTTTAGACGAGATCTCATATGCTGATTTTAAAAAGAACTTCGACGAAAACGTAGACCATCTCATACGTTCATTATTAAATGGCACCTACACACCAGAGCCGCTAAGAAAGATAAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGATAAGTTAGTTCAAAGGGTTTTATACTCGGAGTTAAATCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCGCACAAATCCACCTACAAAGCCATAAACAGAGCCAGTAGCTTCATAAACGAAAATGACTGCTGGATACTAAAAGCCGACGTAAAAGACTTTTTCGAGTCGATAGACCACTCAAAGCTACTGCAAATTTTA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:0, 3:3, 4:0.44, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 2 3426-4441 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVL010000009.1 Campylobacter concisus isolate 2010-43100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3426 37 100.0 36 ..................................... ATTCTAGATCGAATTCTTTAACCTCTTTTTCTCCAA 3499 37 100.0 38 ..................................... CCCAAACCCACTCCATTGACTCATCCCAATGAGACCAA 3574 37 100.0 35 ..................................... TTGATTTCCTTGTCACCAATTATCTCTAATGTTTC 3646 37 100.0 40 ..................................... ATTTCTCAGTTGCGCCTTCTTCTAGACATTCTTGCTTAGA 3723 37 100.0 38 ..................................... TATACTTAATAGCTTTTCTCTGTCTGGTTTTCTAGAGA 3798 37 100.0 39 ..................................... ACGTAGAAGATAGCAATAGCAATAAGCCATTCCATCTGA 3874 37 100.0 36 ..................................... TAAATTCCTTAATTTCCTTGCCATTTATGGCTTCTA 3947 37 100.0 37 ..................................... GTAAGAGTATATACTGTAGATGAAACTAATGATATAC 4021 37 100.0 38 ..................................... ACCGTCGCATGAACCAGACTCATAGGCTGAGTCTGCTT 4096 37 100.0 40 ..................................... GCTGGGGAATACTTATCGGCGAGATCCTTTATCTCATCTT 4173 37 100.0 38 ..................................... ATTAGGATTGATGGAAAATGACGCAACTCTTCAGTTGC 4248 37 100.0 43 ..................................... AAAGATTTCTCTTTTACAGCTTCTTCTTTAGCAGCATTAGCTA 4328 37 100.0 39 ..................................... TTTATGTAATTCAGTTGATAGCCGCTATCTTTACTTGGA 4404 37 94.6 0 ................................A...A | T [4438] ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 99.6 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGACTTGCGAACTTTTTTGAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTACTAATTTTTTCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGACTAGCACGAGCAGATGAGTAAGATCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCCTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGGATACTATGGCTACTTAAAAAGCTAAATCGTGGCGAAATAATCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 17286-19488 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVL010000008.1 Campylobacter concisus isolate 2010-43100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 17286 37 100.0 34 ..................................... TCAGCAGAAGCTAGGTGATTTTGAGCGTTATAAC 17357 37 97.3 40 ..................A.................. GTGAAACACACCGTCAATATTGTAGTAAGTCATCTTTTGC 17434 37 100.0 46 ..................................... ACAATGGAGTGTTCATTTTTATCTCCTTTATAAAAAATAAAAACAG 17517 37 100.0 38 ..................................... ATTACTGTCACTCTCTTCAGGAAAGACAAAATAGTTTT 17592 37 94.6 39 ..CT................................. GGTAATACTGATGCCGATGCATCTTCACCGCAGAATTTA 17668 37 97.3 42 ....................G................ TAATGATGTTCTCATTGTAAATCCTTTAAAAAAAATAATATA 17747 37 97.3 38 ....................G................ AAGACCCGGCGTCATAAGCCGAATCTGCGTTGAAATAA 17822 37 97.3 39 ....................G................ ATCTCCGTTTGAATAAGTGCTAGTGGAGCATTTATAAAA 17898 37 91.9 47 ..CC..............T.................. TTAGGTCTAGTCTGGACTACATCAGTGAACTCGTCGTCATCAATGTA 17982 37 94.6 45 ..CC................................. AAAGGAACAAGTTGGCGGCAACACTTTCTGCCCAAGCCATTTAGA 18064 37 100.0 44 ..................................... TATCTGTGCGTACCATAATGTACTCCTTGTGTTAAAATTTTGGT 18145 37 100.0 47 ..................................... AAAAGCTCGGCTAAGTCGAACTTTTTTGTTTGCTCTTCATCAGTAGC 18229 37 100.0 35 ..................................... TGAGAAAAAAGGATATTTTTAAATTTTCCATTTTG 18301 37 94.6 43 ..CT................................. GCTTACTAGCAATAAGCTAGCTATTAATACTCTTTTCATTATC 18381 37 97.3 41 ....................G................ ATAAAGCATGTCTCTTCACGTTTTTCGCCATTGACATTAAA 18459 37 94.6 40 ..CC................................. TACCTCTTTCGAAAAAATTTCTTCTGCAGCAATTGATCTT 18536 37 94.6 37 ...........T........................T CTTATCAAGGAATTTCTTGAGATAAAGTCTTCTTTGC 18610 37 100.0 40 ..................................... GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTA 18687 37 86.5 41 ..CT................G....A.........G. CTAAAAGCAGGAAAAAAATAGAAATAATCAACTAGCACGAG 18765 37 94.6 39 ..CT................................. ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGAC 18841 37 91.9 41 ..CT...........T..................... GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGT 18919 37 100.0 38 ..................................... TCGAAAGAAACGATTGGACATTGTGGGATGAGGGACCA 18994 37 100.0 41 ..................................... AGCTAAAGACAGATAAAGCCTATTCATATCTTGCATATCGC 19072 37 100.0 39 ..................................... AGGAGCAGCTTTTTCTGTCCCAAAACAATTCAACATTGA 19148 37 94.6 39 ..CT................................. AACTATTCTCTTAACTATGTCTTCTGTTAACGTACTCAT 19224 37 94.6 37 ..CT................................. ACAGATGGTGCTTCTTGTCCGTTGTTTTGCTCTGCTT 19298 37 94.6 40 ..CT................................. GCGTAGCACCAATATTTGCCGTCAATCAGTGCCATGTCAT 19375 37 97.3 40 ........G............................ AACATCCCAGTCGTCAAAAGCTTAATCGAAAAAGCTGAAA 19452 37 91.9 0 ..CT...............................G. | ========== ====== ====== ====== ===================================== =============================================== ================== 29 37 96.5 40 ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TTCTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTGGCTCACGTGAAACCTGCGAGCAAGGGCTTGCCAGACTAAAAGACTTTCTAGTAACCACATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATCTTAGCAAAACTCACAGCCTCGTCCAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCGGCCTATCAATAGTTCTTTTAAAACTCATTGTTAATTCACAATCGTTTTTTAGGCT # Right flank : CGGGCAGATCTATTGAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGACACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTCGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //