Array 1 864033-865588 **** Predicted by CRISPRDetect 2.4 *** >NC_018411.1 Mycoplasma gallisepticum NC06_2006.080-5-2P, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 864033 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCAGTTC 864099 36 100.0 30 .................................... ATAAGAACAAGAACTATCTAACGCTTTTTT 864165 36 100.0 30 .................................... GTAAGTTGTCGATCTCTTCACTAACGACAG 864231 36 97.2 30 ......A............................. TTGTTGAGCTAATTGGACTTAAAGCAAATA 864297 36 100.0 30 .................................... TTGAAATTTGAATGTTTGGAAATCTTCACG 864363 36 100.0 31 .................................... GCAATAGTTTGTAAGCAAAACGTGGGAGGGG 864430 36 100.0 30 .................................... AATTAAAAGTTAAGAACGTTGTTGCTGACG 864496 36 100.0 30 .................................... TAGTGTATTTTAACCACCGTTCAAGCGCTC 864562 36 100.0 31 .................................... TTTTTTGTTAATGAATTAAAAATCTTATCAG 864629 36 100.0 30 .................................... TTTTTTAAGCTCATCTTCAAGGTGTTGATT 864695 36 100.0 30 .................................... TTTAAGCGTTCCGATCGTTTGTCAAATGTG 864761 36 100.0 30 .................................... AACTTATCTGCATAACCCTTTTGAATCTCT 864827 36 100.0 30 .................................... AAGTTGATCATTTAAATGAGCTTTTAAAAA 864893 36 100.0 30 .................................... ACGTTTGAGGTTCAGCTAATTCTGGGGTTA 864959 36 100.0 30 .................................... TAATTAATCGCGATAATACAATGTATTTTG 865025 36 100.0 30 .................................... TTTGATCATCGACTGTTCAAAGAAGGCGTA 865091 36 100.0 30 .................................... TAGTTAAATTAATTTTTAAAGGATGGTTTA 865157 36 100.0 30 .................................... TAATAATCTTAATTTTAGTGTGTTTGTCGT 865223 36 100.0 30 .................................... GAATTAAATTATCTTTATAAGTAAAATAAA 865289 36 100.0 30 .................................... GTTTTGCTTATAAATTGTTACAAGACTTCT 865355 36 100.0 30 .................................... ATTCTGCCGCCACGATATCGATTTCTGTTC 865421 36 100.0 30 .................................... ATGGTGACGAATATAAACCCCAACTTGATC 865487 36 100.0 30 .................................... CAACAGCCGTTGTTAAAATTAAAAAAACTA 865553 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.9 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : ATCAAAGTAGTTACAGCAATGGGATTCATTGGCTCAATCTTCTTTGGTTTAGCAATCGGATTCACTGTTAAATGAATTAATACTTGAAGAATTAATAAAGCACTAGCACCAATCATGCCTGTCTTTGTTATTCCTTTAGGTGTGGGATTGTTTTATGCTTTAATCGCTGTATTTGTTTTAGGTGCTCCAATTGGATTTATCATGGATAAATTCATTAAGGCTCTTGAAGAAGCCTTTAGAAACGGTAATATTGGTATTGGTTTGGGAATAGGTTTAGGGATCTTAATTGGAGCAATGACAGGATTTGATATGGGTGGTCCTGTTAACAAAGTTGCTTTCTTAACTTGTGCAACCTTAATTACTTCAAATATCTATGAGCCAATGGGAATGATGGCTGCTGCCATTCCCATTGCCCCACTTGGAATGGGATTATGTACCTTAATCTTCCGTAAGAAATTTAATGAAGGTGAAAAATCACTTGGAATTAGTGCAATCCTAAT # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTTTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //