Array 1 676-465 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000865.1 Actinoalloteichus spitiensis RMV-1378 Contig865, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 675 28 100.0 33 ............................ GGAGGGGCGCACGCTGGCGGCGGATTTGTTGCT 614 28 100.0 33 ............................ GCCCACGCAGTTCAGGGCCACTGGACTGTCGAC 553 28 100.0 33 ............................ GCCAGCCGACGATTCAGGGCGCGGACCAGGCGG 492 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GAAAGCCCCGCGCGAGCGGGGGTGAGCC # Left flank : AGCGTGGGAGGTACGGCCTCCAACATCACCGGGGCGGTCCACTCCAGCGAGGGGTACGCCACG # Right flank : CGGTCAAGTCGACCTTGTCGTGCCCGGGTTTCTCGATGGGGCCGCGCCGGGCACAGTCCTCGGCGGGGCTGATGAGTGGTTCCGTCGCGGTCGTGGTGTACAGGGCTGATGGGGCCGGGGTCGGTACCAGCGTGCTCGTCGTGGGGCTGGCGAGAGTTTGGGCGGCGGAGGGGAACCCCTCCGGTCACCACCCCGCGCCCGTGCCACCACGGGGCGGAGCGGCCCTCGTGGTCGACGGCGGTCGGCGAGCCCGCCTGCTGAGTGCCACGCCGGGTGGCGGGGTGCGGGGTTCTGGTACTTCGGGCGGATGGCCACCTCGGTTGCGGTGGCTGCCGTGTTGAGCCGGGGCGAGTGGGTTCCCGTGGGTCGGTGCCGGGGCGGTGTCGTGGGCGCAGGGCGGCGGGGATCACAGGGCCGGTCCGGCCGGCGGGGCACTGTCTGCCGCCCGCCGCCGGCGCTCGCCGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2703-3651 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000750.1 Actinoalloteichus spitiensis RMV-1378 Contig750, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2703 30 100.0 34 .............................. GGATACGGTACTCCTCCACCGATACAACATCGGG 2767 30 100.0 34 .............................. ACGCGTCCGGCGCACCTCTGCAAGACCTTGGCGG 2831 30 100.0 35 .............................. CCCCGGGGCGGGCGCCCGAACCGACCTGAAGGAGA 2896 30 100.0 35 .............................. GTCGTGCGGTCGGTCCACGCGAGCTGTAGGGCGTA 2961 30 100.0 36 .............................. TCGTCGACCTCGCCGGCCAGCAGGTACCGGCTGCCG 3027 30 100.0 34 .............................. ACGACCAGGGCCACGCCCATGAGCAGGACGATGG 3091 30 100.0 38 .............................. GTGGTCTCGTGGGTACGGCGGTCGCGGCGCCGTTTCTG 3159 30 100.0 36 .............................. GCGTGGTCGTCGAGGAACCGCTCGATCGCGGCCCTG 3225 30 100.0 36 .............................. ATCTCCCAGGCAACCTCGTCCGCGTACGGGGACACG 3291 30 100.0 35 .............................. GGGCTGCCCCGTCCCCGGGCCCGTCACGCACCTGT 3356 30 100.0 36 .............................. AGGGCGGCCGGGCGGTGCCGGCGGGCCGCCCGGCGG 3422 30 100.0 36 .............................. TCCCATTCGGCCCGGCCGGATGCGGCGTGGGCGCGG 3488 30 100.0 38 .............................. CCGCGGTCAGGCCCAGCCACAGGCCGGCCTGGTGGGTC 3556 30 96.7 36 .........................T.... CCCTCCTCGTTCCTGACCTGCTGCCCGGGGTACAGG 3622 30 80.0 0 .............T.G..G......G.TG. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.4 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GTCCAGGACCCGTAGAGCAGCACACCGTCGAGCCTGGGCTCCGCGTGCGCCACCTCGCGCAGCCGGTCGATGCGGCGGGCGAGGGCGGTCGGTTCGGTGTGGGGCATGGTGGGGCTCCTCCCTGAAGTGCACGAACTGGTTCCCGCGCCCGGCCGGAGACGGCCTGCGGACGCGAGCGGCGGTGACGGCGCGGAACCGTGTCCTCAGGAAGTGCTCATGCGCGGATGGTATCGAACGAGCGATGGGGGAGAGGTGGGCGACCACTACGCTTGAGGCGGTCGAGCACCGGGGCCGGTGGGCACCTTCCCGGCGGCCTTCGACGGCTCGGCTTGCTGGCCGGAGTCGTGCTTCCGACCACCGGAACGCCGGAGAGGAGTCACGATCGAGTGAGGCTAGATTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAGAACCGTGTCCGATAAGGTGGTCCAGGCACATGCTGACCTGCGACTTTACTCTCGG # Right flank : CTGTCAAGGCCTCAGCCGGCGGTGATGCCCGCAGGGGCGGAGTGACGGGATCGCACTGGCTGCATTGCGACGACGAGGTGTCAGCTCGCGTTGCACCTGTCCCTGCTCGGGAATGAGCACCTCGGGGCTGACAACGTTAGTTGTCTCGTGCACCCGATGCCCGGTCAGTGAGGCACTGGAAGGGACTACTGTGGGAAGCGGTCCCGCCACTGTCAGCGAAGGGGACGTGCGGTGAAGCTTGAGGACGACCTCATTGGCACGAGGATTCGACAGATCCGTCACTACCGTGGCATGACCGCGTCAGCGGTTGCCGGGCTTGCGGGTATCAGCAGATCCTACCTATCACGCATCGAGCTGGGTGGCAGGGCGGTGACGTCCAGGTCGTTGCTGGAAGCGATCGCCGCAGCGCTCCGCGTCGCACCGTCGGCACTCACATCCGAGCCGCACAAGACGCTTCGACGAGGTGACAACAGCGCTCACGATGTCATCCAGGCCCTGGA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 71-402 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000636.1 Actinoalloteichus spitiensis RMV-1378 Contig636, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71 28 100.0 33 ............................ GGCTAACGGCTTCTCGTCCTCGTCCTCGCCCCT 132 28 100.0 33 ............................ GCAGGCGGCGCGTCTCCAGGGCGGCACTCGCGA 193 28 100.0 33 ............................ GCGTCGGTCGTTGCGCGCGCTTCCCACCCCTTC 254 28 100.0 33 ............................ GTTCGCTCCGTCGACTCGGGCGACGACGCGCGG 315 28 96.4 33 .............G.............. GACGACCACCCAGCTGGTGCAGGAGGCCCGGTC 376 27 89.3 0 ......T...T......-.......... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 33 GTCTGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : ACTTCGCGGAGCCACACCAACGGGAGATCACAAAATGGTCACTCGGTAGCATCAGCGCAGGTCGACAAGGG # Right flank : CGAACGACTGCTTGTGGGGGCAGAACGTCTCGGCGTTGGCCTCCGCAAGTGGAACGCTCTGGCGGGCGCCTGGTCGCTCAACGACTCGAACCACCTGGTGGGCACCAAACCTGGCCGCTCCACTCCGGACGCGCCTGACCCACTCGTGCCGGGGCGTTGGGGACGTTGGCACTTGCTGGCTATGGGTGGCCCGTCGTGCTGGTCCAGGCGTCCCTGGCGGGGCGAGCGGGCGATCGGTGCGCCGGCTCACTCACGGTAGGCCACCACCGCCCTGCTGGGCACCCAGTTCGCTTCGGGAACGCAGCCACATTTCGTGCGGCCACACTTCGTCCTGCGGGACGCAAAGCTCCCACCATGGGGGTTACTCGCGGGTAGGGGCGGAAGTGGATGATCGGGCGCTGATCGGCACCGGAACGCGAGAAGGCCCGCTGACCTGGTATGTTCCCAGTGTCAGCGGGCCTTCTCGTAACCGTCGGGACGACAGGATTTGAACCTGCGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2739-3196 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000622.1 Actinoalloteichus spitiensis RMV-1378 Contig622, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2739 29 100.0 32 ............................. GCCACCGTCGTCCGCGCCGCGACCACCAGCTC 2800 29 100.0 32 ............................. CCCGGCGACGTCGTGGCCTGGACCGGGGCCGA 2861 29 100.0 32 ............................. ACGGCGAACACGACCGCTTCCCTGAGGCGGAG 2922 29 96.6 32 ............................G CGGCCGCAGCGGCGATCTCCTCGTCCCAGTCC 2983 29 96.6 32 ............................G GGGAAGCCGGGGCAGTCCGCGCACGTAATGCG 3044 29 100.0 32 ............................. TTCTGCATCGAAAGGATGTTCGAAGACCAGAA 3105 29 100.0 32 ............................. CGGACGCGGGCCATCACGACCCGCCCTCGCGC 3166 29 86.2 0 .........C............G.G...T | GC [3187] ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : ACGTGCTGGCGGGGAAGGTCGTGGCCTGGGGGGCGGCCGAGGGCATGGACTGTGCGAGGGCGGGGGTGGCCGCCACTGTCAGAAGTAGGGGTACCACTGCCAACAGGGGAGCACGGCGTCGCATGAGGCCTCCACGAGCTGCGGAAGGACTGCGTTGTCCGATGTGTACGAACAACGGGGACACCTCACCCTAGGATTTCGTGAGAAAATTTCGAGAGCCTCCAGCGCAACGGAACATGACGGCGAGATGACCTACGGTGAACCCCTGGGCGGGGTCGGTCACGCTGCTCCCCAGCCGGCGGAGTCGGTGGGTGAGGTGTCCTGAGCCGACGGCGTCTGGAGGGACCGCGACCACCGGGACGGCGGGGAAGGGGGCCCGAACGGGGCCGCGCCCGGCGGCGGGCATACTCACGGCGAGGAGGCTTGTGGTACTGCGGGAGACGCCGAGGAGAGTGAAGGAAAACCGGCAGGGTCGCTCGTGAACTCCCAGGTCAGGAAGT # Right flank : TTACTGCGATGAGCTGGGCTCCTGCTGGCCCAGGTCATCCCCCGTAGACAGGGCGGTTTCGCTGTTCTCCACCCTGACCCGGGCCAGGGGCGACGTGGTCCACAGGTAGGTGGGGTGGGCTCCGCCGACGGTGGGGTCGGTGAAGCCCCAGCTGGTAGCCGACACGTGAGCAACCTCGTCCAGGCCGGACACATGATGTATGTCCACGAGGACGCTCCCCGCTCGCGCTGCTGGTTCGTCCGGATTGCTCACGGCGGCTGCGCTCGCCCACGCACGGCATCCCCTCGTCGCCAGTGCGGACGGGACGTGGACATCCCATCCGCCGGGGTCACGGGTCGCCAGGTGAACCCGGCGCGGGATGGACTTCCTTTCGCAACCGCTGCACGCACCTCAGAGCGGGAACCTACGGACGGTCTCGGGGTGGATGATGAGTCGGACCTGGTCATCCGCCATCATCCCGGCGAGTTCCTCGGCGCGGCCCGGGTCGTTGAGGTCCCAGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 615-1827 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000645.1 Actinoalloteichus spitiensis RMV-1378 Contig645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 615 30 100.0 38 .............................. AGGTCTGGGGACGTCTTGTCCAGCTCGGCCCGCACCAA 683 30 100.0 35 .............................. ACGACGGTGGAGATGAGGAGTCCCATTGCCGCCGC 748 30 100.0 37 .............................. ATGTGGTACGAGCCGTTCAGGCTCCGGGGTAGCGGCG 815 30 100.0 33 .............................. ACAGGGCCATCAGGTCACACCTTCTTCGTGCGG 878 30 100.0 34 .............................. ACCAGGTCGAGGCCGAGCGCCGACGCCTGGTCGA 942 30 100.0 38 .............................. GATCTCCTTGGCGTTGGCGGCTCGGCCGCTCCCTTGCA 1010 30 100.0 35 .............................. GCGGCCACGAAGGCCGGCGTGAACTCAGCGCCGTC 1075 30 100.0 37 .............................. AGGCGCCGGGCGATTCTTGCGGCGGCCTCGTCGCCGG 1142 30 100.0 35 .............................. CAGGTCACGGTGCCGCCGGCCACCGGGACCTCCAC 1207 30 100.0 36 .............................. CGCCGACAGTCCACAGCGCGCGCCCCAACGGAACAG 1273 30 96.7 36 ........T..................... GCGACGGTGTCGGTGAGGCCGTCGCAGGGCCCGCCG 1339 30 100.0 34 .............................. CCGACCCAGCGCCCGGGGCGGCGACGCTCCTCGA 1403 30 100.0 36 .............................. TCCACCGTGGACGAGGCTGACCGGCTGCGGGCGGCG 1469 30 96.7 35 ...........................G.. TCGTGGATCACGTTGACCTCCTGTGGGGATGGTGG 1534 30 100.0 37 .............................. ACGGGCCGCATCCGGATCGTGCTGGTGGGCGGGTCTT 1601 30 100.0 35 .............................. CCCATGTGTCACCTCCTGGTGTCCTCGGCGGCCCG 1666 30 96.7 36 ........T..................... TTGCTACCCAGAACCACTTCGCCGCCACGCGCGAGG 1732 30 100.0 36 .............................. CGGGCAGCCGTCCCCATCTGAGCGGCGACGGCCCAG 1798 30 83.3 0 .......C.................G.TGT | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 98.6 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : CGCTGAGTGGGGGAGGGCGCTTGTGTCGGAGCGGCGATCGCGTGACCGTGGGCTGGCGATGATTCTGAAAGCCGAGTCGCTGGCACCGAACTGGGCGAGGAACCACCCCTTCATCCGTGATGCCGTCGGAACCTGCCTGGTGCAGGCCCGAAAGGATGCAGGGAGCCGTGAACTGCGTGGGCTTGCCATGCGGATGGGCATCGCTCCCTAGAGTTGGCATGCGAGAGGGTGTTGGCGGAGGGGCGCCGAGATGACACGGCCAGTGCCCAGCTGGGCGTTGGCTGGCGTGGTGAGGTGGTGTGCTACCTCCGCTTGCCTTGCGGTGGGGCCGCCCGTCACGCTGCGGGACGGGCGGCATAGGGATGGAAGCGTGATCCTGCTATCTGGTGCGGGCAAGTTTCAGCGAACCTCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAAAACCGCGTTCGATAAGGTGTTCCAGGTACGTGCTGACCTGCGACTTTACTCTCGG # Right flank : TTGGCTAGGCCCGCTCGTGGTGCTGACGTCACGGGTGGGATGGCGACTGGCCCCAGCTGCATCGCCTGACGAGGACGTGTCAGCTCGCGTGCTACCAGGAACTGAACGAGCAATGAGCGCGTTTGGGTTGAGAACGCCCGCCTCCTGCTCCCACAGCGATCTGGTCCTCGGCTCCCTGGGATTGCCGTGGGAAACAGCCCCACCACACTCGGCGAAGGGGACGCGTGGTGAAGCTCGAAGATGATCTCATCGGAACGCGGATCCGGAAGATCCGTCACTGGCGCGGCATGACCGCCTCGTCCGTCGCTGGCCTTGCGGGTATCAGCAGGTCGTACCTGTCCCGGATCGAGCTGGGGAACAGGGCGGTCAGCTCCCGGTCAGTCCTGGAAGCCATAGCCAAGGCCCTGCGGGTAGCTCCATCGGCGCTGACCACTGATCCGCACCAAACGATCCGCCGTAATGACGTGCCAGGGCATGACGCCCTCCAGAGTGTCGACGCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 464-1678 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000615.1 Actinoalloteichus spitiensis RMV-1378 Contig615, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 464 37 100.0 35 ..................................... AAGGCGGTGAAGTTGGCGGGGGCGAGGATCCGAGA 536 37 100.0 35 ..................................... ACCCGAATAGACTAGCAATTGCAGCGCAAAACCGA 608 37 100.0 34 ..................................... GCCTACGGCTACGGCGGCGGGACCCCGGGCACCA 679 37 100.0 36 ..................................... CGCCCCCGTGGAACACGAGGCGGAACTGCGCTGGGA 752 37 100.0 37 ..................................... TGATGATCCGCATCCTGCCGCCGGCGGCCGCGCTGCC 826 37 100.0 36 ..................................... CGCAACTCGCACACCGGGTCACCTGCCCCTGCCGCA 899 37 100.0 37 ..................................... GCCGCCGCCCAGGCCGCCGCCGCCCAGCGGCTGGCCG 973 37 100.0 38 ..................................... TCCCGGCCACCGGCAAGCTACGCAGGCCCCCGGACATA 1048 37 100.0 40 ..................................... GGGTGGCGCCGGTGGATGACGAGAGACAAGGAGAGTTGCA 1125 37 100.0 38 ..................................... CGAGTCGTACACGGGTGCCGTCGAGGTACAGGTCCGTG 1200 37 100.0 36 ..................................... GGGTCCTCCTGAAGCCGCCGCTTACCCGCCTTTGAC 1273 37 100.0 39 ..................................... GGGTCCACCACCACCGGGTCGAGCCGCACACCCTCGGGG 1349 37 100.0 38 ..................................... GTCGTGTCCGCCGGGGCGGAGGACCGGTCGATCCTCCA 1424 37 100.0 35 ..................................... TACGCCCGCCAGATCCTGAGCCTGCCCGTGTGGCT 1496 37 100.0 36 ..................................... ACCTCGGTGAGTGTCAGCCCGCCCGCCACGGCCGCG 1569 37 100.0 36 ..................................... GGCACCTACGGGCTGACCAGCCGTTTCCCCGACCAA 1642 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 100.0 37 GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : ACCCATCGAGGTGGGCCGGGCCGAGGTCTTCGCGGCGTCCGCTGTGCGGTCTTCGCGGCCTCCACGTCCGACGTGCGGCCGGCCGGAGCGCCAGCGCCGTCATCCACGGGACGCTCGGGCGCTCCACCCCGGGGGGCGGCGGTAGCATCAGCCGGTGGCCTCCGGTATGCCGTGTCCGCGCAGCCGTGCCCGGCTGGAGTCGGGATGCCCTCCGGTGGTGCTGGAAGCGGGACGGGCACCCCGTGCCCCGAACACGTGCGTCGGTGATGGACGCGGTAACCCCGAGGGGGTTGCCCAGACAGGTCTCGGAGCGGTCGCTCCCGCCCTGTGCTCGAGCGCGGATCGGAAGCGTCACGCGACACGCCTGTGCTCTCCTCAGTGGATCCCGGGAGTGTCGTCCTGTATGTCCGTCTCATGCTGGCGCGGCGTCGCCGCTAAACTGGAAACGCGCTGTTCGCGCAGCG # Right flank : CGACCGCACCGACCGGTGGGGAACGACGCGGCCCCTTGCACCGGTCCTCTGGCGCAGTGTCCAACCCAAGATTGGTCTCGGCGGGAGTGATTCCGGAGCGGCCTGAGAGGCCGATCGGTCTAGGTACGTTGGTTCTCCTGCCAGGAGGGCCTCGGCGCGAATCCGGACCGATTGCCCGGCCGCATGCTCGCAGCAACCGGAACGGGGCGGTCGACGAGCTCGCTTGTGGCGCTGATCCGAGCAGGGGCCCGGCCAGCTCGCGGAGCTCGGACTGGTCCTCGCGGGACTTCGTGAACTAGGGGAGGGCCTTGTTCAGCAGCGGGGCGACCGCTTCGACGATGGGGCAGGCCTCGCCCGAGGCGATCGTGCTCGCTCGCACGACGGCGCTGGCTCCGGGATCGAGGTCGAGGACGATCTCGCAGAAGATGTCATCCTCGACCTGGAGGGCGCGCCTGCCGTCCACCTCGATCTCCTCCACACTCGCGTCCCCGTAGTTCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 7127-6731 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000486.1 Actinoalloteichus spitiensis RMV-1378 Contig486, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7126 29 96.6 32 ............................C ATCTCGGAGGACAGCCTCAAGGAGTTCCTCGG 7065 29 100.0 32 ............................. ACGACGTGGGCGGAGTGGGTCGCCCTCCAGCT 7004 29 96.6 32 ............................C GTTCACCTGGTGACGCAGGACAGCGACCAGGT 6943 29 100.0 33 ............................. GTTCAGCAGGGGTTCGCGGTGGGCTCGGCCGCC 6881 29 100.0 32 ............................. AGCAACTGGGATCCGTGACCGCGCGGGCCAGC 6820 29 100.0 32 ............................. AACACCTCGCAGCCGATCGCGTCCGCTAGCGG 6759 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : CCCGCTGAGCCGCCACAGGTCCAGCACTTCGCACCACCACGGGGGTCCGCAAGGGGGCGGAGCCGGCTACCCGTCCACCACTTCTCGGTCCGCGAGGGCTGGCGGAGCTGACCTGCCAACTCCTCCCCTCGTTCCCGTGGAGGATCACCAGACGCGAGCGGACCAGGTGCGTCCCGCCAACCGGGTGCGACTTGTCGTTCGCTTCGGGTCAAACGTTCCCGTCAAGCGCCGCGCGAGGTTTCGAGAACCTGATGTCCGCACAGGAATCGGGCGTGCGGACCTCCGCTACGCGGGTGACCACCACACCTGCGGGCGGCATACTGTCCGCAGGGAGGCGTGTGGTGGTGCGAGCGACCCCGAGGAAAGTGAATGTGTTTCCGCCGTGTCACTCGTAACGCCGCAGGTCAGGAAG # Right flank : GCGTCTTCGACCGCACGCGGAGATGCCACCAGCCGGGCCCCGCATGAGGGGCTGGATGTGAACGCCAAGGGAGGAACGATGCACGTGGAGTCCGACGGCGGGGGTGACACCTCTGCCGTGACACGGAAGATGACGGGTAGCGTCCACCAGTTCAAGGTCGCAGCGGCCGCGGGCAAGGTCTCGATCGACCCGGACAGCGCCGAGGCGATGGCCACCAAGGTTGATGCCATCGCTGACCGAGCCGAAAGTCGGCTGGATTACTTTCGTTTCTTGGGCAGGACGTGAAGCTGGGTTCGAGCCCGGTGGCGAAACTGATGTACCAGCAGGATCAAGCCTGCGCAGCCGGTTTCCCTGACTCCGCCTACGAAAACCTACTGCTCTACATCGAAACACTGCGGGATCTCGCTTCCGCTATTCGGGCGAGTGCGCGCGTGACGAGTCAGACCGACGAGGACAGCGCCGCATCGATGAACCAGATTGACAGGTGAGGAAGACGATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000481.1 Actinoalloteichus spitiensis RMV-1378 Contig481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2 28 100.0 33 ............................ GGCGGGCGGCGGGCGTGCTGGTCAGCGCCTCAG 63 28 100.0 33 ............................ GGGCGAGATCGCCTCGCACGCGCACCTGCCCGC 124 28 100.0 33 ............................ GCAAGCGGGCCGGCCAGGGAACCGGTGCCGTCG 185 28 92.9 0 ..................A........G | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : CG # Right flank : GACCTGTGGCCGGGCGCGGCGAGGTGGGGTGGGCGGGATTCGGCTGGGTCGTCTCGTTCGGGGGCGTGGGCCGGCCCGTCCGGGGCTGTTGCGTCCGGCCGCACGGCCTCGGATGATGCAGCGGTCGCGGCCATTGTGTCCGCTGTCTCCGCTTTCCTTGGGCTGGCCGCGATGCGGTGCGCCCGGCGCGTCCCGCTGGGAGAAACGGTACGAACAGGAAGGACAAGGGTGAACGGCCCCTCGTTACGTCGCTGGTCCCTGGATCGGGACGAAGCCCCGGCACGCACGGTCAACGTGGTCACGGTGGGCTCGTCGACGATGGAAGGACACACGGGCGTCGCGCCCACGCACCAGCCGGTCGCGGTCGCGGGTTTCCCCGGCATGCTCGCCGCGCACCTGCCCTGGCAGAACGGCATCTACTACCCGTCGGCGTCCTGGGCGCACGGGTGGGCGACCGGCGGACCGGCGACCACCACGCCGACGGATCTGGGTCAGCGGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 205-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000405.1 Actinoalloteichus spitiensis RMV-1378 Contig405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204 28 100.0 33 ............................ GATTCCGGAGGGCGTGCCCGTGCTCGACATCCT 143 28 100.0 33 ............................ GCTGGCTCGGCGGGAGGTGAGGGCGCCGACCGG 82 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GAAAGCCCCGCGCGAGCGGGGGTGAGCC # Left flank : GAGGTGGTGGGTGTGGTCCAACTGGGGCTTGTCATCGCCACCAGCGCGGTGTTCTGCGGACTCACGGTCCACGCGTGGAACCGCTTGGAGCTGGACCGAGGAGTGTGAGCGGCTTCCGGCAAGCGGGAGCTGAAGTCTGAGTGTCAGCGGGAACGTTTGGCGCAGGGGGCTTCAGGGGCTCGACGGTAGGGTGGGGATCGTGACGCCGACGTTCCGGGAAGTCCTAGGAGGTCGCCGAAGCCTTCGTGCGTTTCGCTCGACAACGAAGCAGGGCAGCAGCGAACGTGTCACTGGTCCTGCGGCTGATTCTCGAGGGTGTCGAGACCTGGTGGTCGTCTGTTCTCCGCGCGGTTCGTTCCGCCTGGGGCCGGAACCTCGACGGCTGCCTTCTAAAGCGTCGCCGCTTCTCTCACGGAGGGCAGCGGACAGGAGTACAGTGACGCCGGATCCGTCTAGGTCAAGAAATGGTAACGGGCTCCCATCGGTGCAGGTCGCGAAGG # Right flank : CGCCATCATCACTCTGGACCGTACTGGGTTTGTTGGAGGCCCTGCACCCCAGGAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9818-9545 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000396.1 Actinoalloteichus spitiensis RMV-1378 Contig396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9817 29 100.0 32 ............................. AGGTTGGGAGGGGCAGATGAATCGTCACCGTG 9756 29 100.0 32 ............................. TTGTCGATCTCGATGGTCCCGGTGCCGTTGTC 9695 29 93.1 32 .........................A..C ACGGCGGACTGCGGGAATCGACGCCACGTCTC 9634 29 96.6 33 ............................A TCGATCTCACTTGGGACGACCTGGACGCCGTGG 9572 28 93.1 0 ....................-..A..... | ========== ====== ====== ====== ============================= ================================= ================== 5 29 96.6 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : CCTGGGGTGCAGGGCCTCCAACAAACCCAGTACGGTCCAGTGGCTGATCGCGG # Right flank : AACGAGCGGACTCCATCGCCTCAGGGAGCCGCGACCCGTTGCCTGACGTGCCGGTGCCGGTCATCTGGTTGTTGATCGCTCGCTGTGGCGAGAGCCTGGGTCAGTTGCCTCCAGGAACGGTGAATCGGAACACGTCCCGAGGACGACCGGGCGGCCAGTGGCGGTTGTCGAGGCAATTTTCCACCTGGTGCGTCTGGATTTGGCGGTTCATCGACCAACCTCCACCGGTCCTCGCTCCCTGTCGGTGTGCGGTGCTAGAAATCGCTCGGATCGTGGGGCTCGGAAAAGTTGCCCGGAACCGGGGTTGCCCAGTCGCGTGCTGGTGATTTTCCGGCGAGGTAGAAGGTGAGTGTCGTTGCTGGCCAAGGAGAGTTCGGTCTGAAGATCGAGGTACCAAGTGCTGATATACGGCCGAACGGGTGACATTTCCCGTAATCCGAACCGGCGCGCTGGTACTTCGGTATTGGTTGAGTGCTGGCCTGACTGGAGGGTGTGGTTGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6873-7513 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000368.1 Actinoalloteichus spitiensis RMV-1378 Contig368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 6873 29 100.0 34 ............................. CCCCCCCGCAGAGGATGCGGGCCGAACTCCAAGG 6936 29 100.0 32 ............................. CAACCCATATGATGTGCCTGCCTCTCATCTGT 6997 29 96.6 32 ............................G CGGACGGACGCCGCGTGACGGTCGTCCTCCGC 7058 29 96.6 32 ............................T TGAACGGTTCCGCGCCCGATACTTCGCCGCCC 7119 29 100.0 32 ............................. TCGGACGAGGCCGACGCGCTCATCCTGGCGTC 7180 29 96.6 32 ............................T GGCGAGCCACGTGGCGTCCCACCGGTGCGGTG 7241 29 96.6 32 ............................G CGGGCCTGCTGACGAAGTCGAAGGAGCCTCGG 7302 29 96.6 32 ............................G CTGTGTCCGTCCGGGGCGGGGCGACCCCTCCG 7363 29 100.0 32 ............................. TACGACCTGCGGATTGGCCGGTACTACCGGGA 7424 29 96.6 32 ............................G TACCCAGACGGGCAACCGCTCCGTTCGCGGAA 7485 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 11 29 97.8 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GTATGTGGTCTGCTCAGGCGAGCCAGGAAATCGGGTGCTGCGGATGACGCCTGCCGGTCGGATGGCCGCGCTGGACCTGTTCCCCGCCGCCGAGGCCTTCCTTGCTGAGCTGTCCGGTTCGTCGCCGACACCCAAGGCTCCAGGTCGCTGTGCGAGCCGAGCTGGTCGCCCTGATCTTCGCCGCTGGTCGGATCGCGGTTACGGGTAATTCAGGGCAGAGAGCCTGAACTCACCCCCCTGCGAGGTGTTGTCCCAGGTGCCGCAGCCTGAGGGCCGGGGGTGATGTGGCTCGAGTTCGGCCAGGACGTGGGGCGATGGGAGCAGGCTAGCTTCTAGCAGGACAACTGGTCTCTGCTGGCTACTTCCTGGCAGACGATCCCGGTGCCCGTGCGACTCGGCGGGAGGCTCATACTGAGGAGGACCAGCGTGGCGGGGAGCGGAGGCTGGAAGAAGTGAATGAAAACTGGCTCTATCGCTCGTAACGCCGCAGGTCAGGAAGT # Right flank : TGTCTGGTGATGTGGGCGGACGGCTGACACACGGTCGTTCCCGCTCACGTGGGTTGCCCGAGTTGGGACGCCCCCACGGCCACTAATCCGCAGGCGCTACGATGAGTAGTCGAACGAGCACTCGGGGAAGCTGGTGGCTGCTGCGGCAGGGAACTGACCTCGGTCTGCGGACGTACCAGCTCCAGCTGGCACGCCTTCCGTGTTCACGAGCAGCTGAGGCCGTGCCTGCGCAGGAAAGGAGGGTTGCCACGTGAAGTTGCGGGCCTTCGATCAGCTGTTGGCAAGCCTGATCACGACCGAGCACCCCGAGGTGACCAACGTGCACTGCTACGGAGAGGACCGTCCGCAGCACCGAACGCGGCTCAGGGTCGATTTCGCCAGCGGCGCGGCCGCCTATCTCTACGTTGACGACGTGTCCGGGCCGGGAATCCCGCGCATGGCCGCTGATTCGCCTGAGGTCCCCCGGGAGGCGCTGTGAGACTCGGTCGTTTCCGTGAACT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3482-4558 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000390.1 Actinoalloteichus spitiensis RMV-1378 Contig390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3482 30 100.0 37 .............................. CCACGACCTGGCCCTACCGGGGCTGGGACACCCAGGA 3549 30 100.0 35 .............................. GACCTGCTGCTGACCGCTGACGCCACCCCCGACTC 3614 30 100.0 35 .............................. AGGGCGCGGCCGCCGCGGCGGCGCACGGCGCGGCG 3679 30 100.0 34 .............................. CCGTCTCCCGGTTCGGTGGCCTGGATTTCTGCGA 3743 30 100.0 36 .............................. AGGTCTGGGGTCAGCAGGCAGGCTGCTTGCTGGGTC 3809 30 100.0 40 .............................. ACGTCGGCGACGAGTGGGTGGTGGAGCAGGCCTGCCCCGT 3879 30 100.0 38 .............................. GTGAGTTGCTGGTTGCACCAGCTTCCGGCTCGGGTCCA 3947 30 100.0 34 .............................. GGCGCGCCGCCGCCCGGAGTACGTGGCGCTACTG 4011 30 100.0 27 .............................. GCGAGCCTTTGTCCGCCTGTTGATGAC Deletion [4068] 4068 30 100.0 38 .............................. TCGGGCCTCACTCTCTCAAGAGCTTCCATGCGCTCTGC 4136 30 100.0 37 .............................. ATCCGAATGGTTTCCCATCCGCGGATCCGGCGCGCCT 4203 30 93.3 35 .................A..........T. CCGGCTTCGTGCGAGTAGATGGCGAAGACAACCGT 4268 30 96.7 35 ...........................G.. CAGTAGACGCGGGCCACCCGGTACCGGCGTATCAA 4333 30 96.7 36 .............................A TCGAAGACCGCGAGGGTTTCCTTCCCACCGTCCCGG 4399 30 90.0 34 ................TA...C........ CTGACGGTGCGCGGCGGGGATGTTGCGTAGGCGG 4463 30 96.7 36 ............................T. CGGCCGGTCACAAGGTCAGACACGGCGCCGGATCTC 4529 30 80.0 0 ..........G.....G.GC.....T..G. | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 97.3 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : CCGAGGTCCCCTTCGCCGCACGAACCCGCCGCTGCCGTACGCCAGCGTAGGCTTCTCCCGTCCTGGTGAGGACCATCCGATCCGGTGACTCGTTCCTCCCCGCCGGCAGCCAGTCGCCTGGTCAGGTGGGGACACCAACGGTTGGCCGCTCGTCGAGCGACCGGCGCGGTACCGCACGACGCCAGGTGGAGCAGACGACGAGCGAGGCCCGCTCCGGCAGCTGCCCGTCGCTGCGACACCGTCACGACGCGAGCCTTACTTGCGCGGCCCGGCTGCCTGTGTGTGGCCGGCCGCACCCGCCTGCGAGCTCAACATCCTGCGGCGGCCGGGGGGCGGGCTGGCGGCCGAGCACCGAGTGGGTTGGGCGCGACGCGCACGGTAGGCTTGCGCCCGGAGATTTCAGCGAACCCCCCGGGTCAGATGTCAAACCTCAGGTTCACTGCAAAAAAGGCGCCAAAAGCACCGTGCAAGAAGGCCCTGACCAGCGACTTTACTCTCGG # Right flank : CTCAGCCCACGCTGGTTCTGAATGGTCACCAGGTGTGGCTCAGCTCTTGCGACGGATTCCAGCGGGGCCACGTACTGGGTCTCCGCAGGGGCGCAACTCCGACTCCGCATCACGGCTACGCGGAGGCTGTCAAGTCACCGTAGAAGGAGGCAGGCGGCTCAGGCCGCGAGTCGAGTCCATGCCAGCGGCGCTTAACGATCCAGCAGGGTCAACGGTGCCCGGCTGCGCCTCGCTCGCGGGTGAGGAGAGCCGTGCCAGCACCCCGCAGCTTGACCCTGCCGTTGCCTCCGCTCGGAGGAACAAAGCTCGAGTACCGCCATTTGGAGTACCCCTTACCGCCAATCCTGAGCTCCCACTGCTGAGAGTGCCTGCTTGCGGCCGAACTTTCAGCGAACCTCACTCGCTGCAGGGGACCCGGGGGGTCCGCTGAAAGAGCAAGATCACCTGGATCGTTCACACCGCCGAGGATTGGGCTAAGTGGGTGAAACTTGACCGGTAGT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 13524-14143 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000390.1 Actinoalloteichus spitiensis RMV-1378 Contig390, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13524 30 100.0 36 .............................. CCGTGGACGAGGCGTGGGGCACCGGGGTCTGGGCGT 13590 30 100.0 37 .............................. ACAAACCAGCCGACTACCCAAGGGGCGGACCAGGGGG 13657 30 100.0 34 .............................. TGCCAGTTGGTGGTGATCCACCGGGCGGCGGCGG 13721 30 96.7 33 .........A.................... GCTTCGCGCCGGCACCAGGGGCAACCGGGCCGG 13784 30 100.0 36 .............................. CCGAGGACGGGGAGACCGCCAGGGACTCCGCCTCAG 13850 30 100.0 36 .............................. CAGCCGGGCTCGCGCGTGTAGGTGACCTCGAGCCGT 13916 30 100.0 36 .............................. AGGTAGTGCAGCCATCCGGCACCCCCGCACTGGGGG 13982 30 100.0 35 .............................. GCCCCCCTTCTAGGACCGGCGGGCGACTCCCCCCT 14047 30 96.7 37 ................G............. CGAACCGCAGAGACGGGCCGATCGGGTCGATCACCAG 14114 30 96.7 0 ..................C........... | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.0 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GTCAACCACCGCACGCTCGGCCGCAAGGTCACGTACGACGAGTTGATCTACCTCGACGCGCTCGCGCTGACCCGAACCTGCCTTGAGGGCACGCCGTACAAACCGTTCCGGATCTGGTGGTGAGGGTGTACACCATTCTCGTGTACGACACGGCGGCGGAACGCAATGCCGGTGTGTTGCGGACGTGCCGAAGGTACCTACGCCACCAGCAGCGGAGCGTGTTCGAGGGGGAACTCAGCGCGGCCCAGTTCGTACGCCTCCGCGAGGAACTGCGGCAGCGCATCGATGCCGACTACGACCACATCCTCGTCTACACCTTCCCGCCGGGCACCGACCCGCAACGCCAGGCATGGGGTCGACCGGACGACGAGCCGCCAGATATCCTGTGACTACCTCATTTCAGCGAACCCCCCGGGTCGGATGTCAAACCTCGGGTTCGTTGCAGAACAGCCACCAGAATCCCACTGTAGATACCTTGTGACCAGCGACTTTACTCTCGG # Right flank : CTCAACGACCAGGAGTGCCGGGCTGGTCCGGAATGCCCTCGGGGCTCCTGCTGGTTGTGTCATCGCGGTCGTCAGGAACTGGTGGTCTGACGCCCTCCCATCGTCCAACGTCGAGGCGAGGCTCCGCCGCCGCCTCGACGGAACACTGAACGACGTTCAGCGGTTCGGGTTCATCGCGCCTCCGAGGAACTGACCAAGTCGGTTTCCACTCGCGCCGTCGCTGATCTCGGCCGCCTCAGAGCAGGCGGACACGATCACTCTTCAGCGACGCTGACTGAGGAGAGTTGAGCGTGACGTTACCCATCACACCGCCGCTCACGCCTGTGCTCACACGGTTCGATGCCACCCGCCCGACACCGAGGCGCGTAAACCGCTTCCACAGCACACCGGAACCCCGCCCCGGGCCGGGTGGCCGGCTTGCCTCGCTGGAAGGGACGAGGTCCTGGCTCGTCCTGTCGGCAGCGCGCGCCCGTTCCTTCGGTCGGAGCTGCCGAACGTCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3098-2641 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000360.1 Actinoalloteichus spitiensis RMV-1378 Contig360, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3097 29 96.6 32 ............................T GCCCACCACATCCCGGGTGGCGCAGCTGCTGT 3036 29 96.6 32 ............................T CGAGGAGCGGGCGGCCGGGGAGTCCACGCCGC 2975 29 100.0 32 ............................. TCCATTGTGGCCCCGATCATGTACACCAACTG 2914 29 100.0 32 ............................. GCATCGCGGGCCGAGGAGCTGTTGGGGCGCAC 2853 29 96.6 32 ............................C GTCACGCTCATCGAGTTCGTGGCGGCGGAGAG 2792 29 96.6 32 ............................C AGATGACCACGACCACGGGTGCCGCCCCGTCC 2731 29 100.0 33 ............................. CCCGTGAACGACGCGTTCGGGCACCGGGTCGGC 2669 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : CTCGTGATGTACCGGCTCACCGAACGCGGGCACATTCTGGTCGGCGTCATCCTGGGTGCCGAGCCCTTGGCCCCGACCGCGACCACGACCTCCGCCGGAATGACCTCGTCTTCGCACGTCAGCGGGTGACGAAGGCCGGCCGGGTCACCTGAGCCGCCCGACCATGAGCGGCGTGGTGAGGAGCCGCATGGCTGCTCGGTCCGGGAGTGAGGCTCCCTCGCCCAGCCCGACCTCCTACCCGCTGGTGACCCACGGCGACACCTACCGGGGCTATGCCTCCCGGACGGGGTGTTACATGCCGGAGGAGGGCGGAGCCCAGGAACACGGTGGTGGCGCGAACGGCTGCCGGGTTCCACTTCGGAGTCGACGCGGAGACCAGCGGTCGGGGGCGTGCCGACGACCGGCATACTGGGTGTCGGAGGCATGCGGTGGAGATCAGGGCTTCGAGAGAAGTGAATGAAAAAGGGGCAACTGCTCCACAACGCCGCAGGTCAGGAAGT # Right flank : GTTGATCGAACATCGCTTGGCGTAAAGGATCGTCCTCCCGCCTTCGGCTCCCAGGTCCTCTACAGGGCACTCCTTCGCCAGCGCAAGGGGGGCGGAGAGGGGCACCAGTGGGCGTCCAGCGGACCTCCCAAACAGTGCCTAACCTCGTGATTGTCCGCCGGGGTCGCACTGCGATGAGCTGGTCCCATGCCCCTACGCCACTGCCTGCTCGCCCTGTCCGTCGCGATGGCGTGGGGGCTGAACTTCGTCGCCATCAGCGTCGCGTTGGAGCACTTTCCGCCGCTGTTCCTGGTGGCGTTGCGGTTCGCGGTGGTCGCCGTCCCGACCGTCCTGTTCGTCCCCGCCCCTGGGGTTCCCCTGCGGTGGCTGCTCGGCTACGGCTGCGGGTTCGGCATCGTGCAGTTCCTCTTCCTCTTCTGGGGTATGGCGGTGGGCATGTCGACAGGTCTGGCGTCGCTGGTGCTGCAAGCCTCGGCCCCCTTCACCGTGCTGCTCGGGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9058-10073 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000360.1 Actinoalloteichus spitiensis RMV-1378 Contig360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9058 30 100.0 36 .............................. GTAAAGTCCACCCGGAACCTCGTTCGGTGCTGCGGT 9124 30 100.0 36 .............................. GTGCCGAGGCTCACGGTGGCGATCCACCGCTGCCGC 9190 30 100.0 36 .............................. CGGAGCTGCGCACGCGTCATCCAGGGCCGGCGCCGG 9256 30 100.0 35 .............................. GGCTGTTCGCTGACGGCACCGACACCGTCCTCCAT 9321 30 100.0 36 .............................. CCGTAGATCCGGATGGGGTGGGGCGTGAGGTTGATG 9387 30 100.0 35 .............................. AGCAACGCCAGGTACCGTCCCTGCGTGGACATCAT 9452 30 100.0 36 .............................. GCTTCGATGGCATCGAGCGGCACGTGTCCGCCGCGC 9518 30 100.0 36 .............................. AGGTTGTGCCGGGCGGTGAGCCTGGCGGATTCGTGG 9584 30 100.0 36 .............................. CCAAACCCCACGGGCCGCCCAGGGCTGCGGCGAGGG 9650 30 100.0 37 .............................. GAGATCTCCCAGAGCCATGACGCTCGCTCCGATGCGG 9717 30 100.0 37 .............................. CACCGGATGGCAGCCGGCGCGTCGGGGTCATGCAGCG 9784 30 100.0 35 .............................. AGGTCGTCTCGGGTGAGGTCCGGGCCGGCCGTCTC 9849 30 100.0 35 .............................. CCTTCGCCTCGTGGGCGAACGCGCTGCATGTGCAC 9914 30 100.0 34 .............................. AGGTCGGGCCACGGGGTGGGGATGATCGCCCCGG 9978 30 100.0 38 .............................. ATCACGTCGGCGGGCAGGGGCGTGCTGTCCCCTCGCAG 10046 28 90.0 0 ....................--......G. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.4 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : CCACCACGGTACGCGGCGGGGACACCACCCGGCGCGTCCAAACCCCGGATGTCCGGTCGGTTCTCGGGGGATGCGCGCCCACGAGCCAGGTGCCCGAGCTGCCGGCGGACGAGGTATCCGCGCACTCGCGACGTCCCCACTGCCCGGCCACCATCGAAGCCGCCATCGCGCCGCGTGGGCGGGCCATTCGGAGGAGCGGGTTCGGCGCACCGGAGGAGGCAGGAGCCGGCTCGGTTCGGCGTCTGGCAGGAGGCACGTGCCCGATAGCCTTGCTGGACGGCCGGAACGCGGTTGGGCTCGGCGGGCGCAACGCTTCGCCCCCTGCTCACCGAGCTGCGTCCCTGCCACGGAGACGCCGGGTAGTTGGAGACGGGAGCCACCACCACGTGCAGCCGAATTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCGAATCGGGCGTCGTTGCAGCCGTCCAGGTGTATGCTGACCTGCGACTTTACTCTCGG # Right flank : CTGAGTGACAGCTTGGGATCGAGCAACGTGTTGCGGCTTCTCGCACCGTAGACACCCCGTGACGTGGCCGATCAGGTGTGGTCACCAGGCGTGGGATGCGTGATGACCGCCCCAGCTGGCAACTCATCATTCGTATTCCCACGAGGCAGGCGCTGAGCGTCAGGCGGGCAGCGCGGTGCTCGTCCAAGGCTCGATGAGCTGTTCGACGAGCAGGTGGTCTCAAAGCCTCGGCCCGGTGGTGTTGGTTTGCCGCGCTAGTCCTCGGAGGCCGGCGCTACTCGGCGAGCGAAGCATGCGGTAGGCCCGGGATGGCCAGTCTCGACGAGCGAGCGACCGCATGTCCGGGCAACGCCGACGAACCCAGTCGCCCTTCGCACGGCGCTCACACCCACCCTGACTCCGCCTCCATCGAACGATTCAGTACTTTAGGTATCCGAACAAGCACCGATTGTCACAACCCAAGAGCGTGACCACGGACGAGGGAGACTCCCTTGGTGCAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1676-1249 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000834.1 Actinoalloteichus spitiensis RMV-1378 Contig834, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1675 30 100.0 35 .............................. AGATCCGACACCTGCCGGATCTGCCCGGACCGGGC 1610 30 100.0 38 .............................. TTGGACTGCTTGACCATCAGGTTGCCGTCCGCGTCCGG 1542 30 100.0 36 .............................. CCTGAGCCGTCCGCCCCGTCCCTAGCCGGTTCTGCG 1476 30 100.0 36 .............................. CCGGTGGTCGGTGTCTCGTCAGCCATCGCAGCTACT 1410 30 100.0 35 .............................. GCGGCGGCGGGCTGGCGGCCCGACCGGCTGCAACC 1345 30 100.0 37 .............................. TCGTAGAGGTACGGCACGAGACCGGGGGCGCCTCCGC 1278 30 83.3 0 ...............CG.........TCG. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 97.6 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : CCTGCCGGCAGATCGGCCCGGGTGAGCGGAGGTCGCTCGCCTACGTCAACACCTTCTACTACTGGCTCGGCCCGTCCGTCGCCTGCTGAGCCGGAACGGTGGGCTCGCCCTCGCGGTAGGACGGGCCTCGAGTCGCCACCGGGAGGGTTCGGGCCGCCCGAGGGCGCGTCGGTGTCGGGCCAGGACGAGAACCCGTGCGGCGGGGTACGAGGGCCGTGGGCGGCGTGACCGGTGAGCCACGATGAGCGGAGGGGAGGGCGGCGGCGCTGGTCGTCCTCCCCCACCCGGCCGTCGTGCGGTCCCCGCGAGGGAGCGCGCCGGCCTGGTGCGGTATACCGGGAAGGGCCCCCGGGACGACGGAAGTGGGAGACAGGAGCCACCACAAAGTGCGGCCGGATTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAGAATGGACGCGATCGACGCCCGCCACGTGTATCCTGACCTGCGACTTTACTCTCGG # Right flank : CCGATCCTGTCCGCCTGCTCCGGGGCGCGGTTCGTCGTTCACTGAGTTCCGGTGCGGCCCTCGCGAACCGGCGCCAGGTCGCCCAGCACCTGGGAAGCGTTGACACCGGGTGACCGCCCTGCTGCAATTCAGCCGTGGTTCCCACGGTGCTGACTCGACGGCGGCACGTCGACTTCGCCCGCGTCAACACCCAGGCGTGTCGTAGCTCCCTGTTCCTCGAGCGCTGACCGCCCATCCCCCGGGTCGCTCCGGCCCGCCTCCCGTGAGGAACCACCATGTCGTTCCGTTGGCAGCCCACGTCCGAGGTGCCCAGCCCCGAGTTGCCGGCGGTGCCCTGCCAGGTCTCCTCGGCTCCGGGCCACCAGTCGGAGCCGAGCGCGCACGCCGAGCTGACCGTGACCATCACCGTCCGCGCGGACGCGGCGGAGGCGGCGTCCGTCACGGGCCGCCTGGTGCGGGCGGTGCGGCGCGCCGTGGACCTCGCGGGCGCCTCGCTCACG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 9098-9458 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000298.1 Actinoalloteichus spitiensis RMV-1378 Contig298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9098 30 100.0 34 .............................. TCCACTGCGTTCTCCTTCTTGTTCGTTGCGGGGG 9162 30 100.0 36 .............................. CGACCTGCTCGGCCTGGGCCTGGGTGAAGCCATCGC 9228 30 100.0 37 .............................. GTTGGGCTCACGGCGCCCGATGGGCACCAGAGCGTGT 9295 30 100.0 38 .............................. CGCAAGAGCAGCCTGGCCGGCGGGATGGCAGCGGTCCT 9363 30 93.3 37 .....................AT....... ACGGACGGCATGACGGAGCTGTCTCGCACTGTCGAGG 9430 29 90.0 0 ...............G.......-A..... | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.2 37 GTCCTCATCGCCCCTAAGAGGGGTCACAAC # Left flank : CACGTCGGCCGGGCCGGCCCCCCGAGTGCGAGCCCACGAAGGCGGTGCACCGATCGACGACAGTCCCAGCTCTCCGACTCCCCGACCCCTCCCTCCGCGACTTCCTGACGGCGCCCAGTGCAGGACGGCCTTCCCGACCGGCAACCGGCCCGATACACCGACGGGGTTCCACCGCCTCCACGAGACGCCGTCCAGCCGACCTGTTCCCCACCGCAGGCTGACCTCCGGCACCTCCACCCATCGCTCGTACTCTCCGCGATAGCGTGTCTCCGCAGGGTGCACACCTCCTCGTGCGAGGCAGCTTCGGCAGGCCTCGTACGACAGGACGGAGAGCGAACGGACGACCACGGGGACGCCCCGACCACGGGCGAGGAGCGGCCGCATGCCCGAGTACCATTTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCCGCAGAACAGCCACGAAAGGCGCCTCCTGGACGGCGTCCTACCTGGGCCTTTACTCTCGG # Right flank : CGCGGGCGGCCAGGGCGTGAAGACGGGATCGGGCGGGACCTCATCGCCTGTCGTGGTCGGCTGCATCGGCGTCGAGGCGTCACCACGGTGTTCCGCCCAGACTCGCCGGCCCGCGGTCGACCACGATCAACTCGTCGCCCAGGAAGTCGTCCACGTCGGGGCCCAGCCACGACTCGCCTGGTCGAGCACGGTGGAACCTGAAGGTGCCGTTCGTGCTGTTCGATCCCACGGTGCAGCGCACCGCGACGGGCTAGGGCAGCGCGCGGACGAGCCGCGCGTCCTCCAGGGCGAAGCCCAACCCGTGCCGCAGCACCAGCACCTGGTCCGCCTCGCCGATCACCAGCTCGTCGTCCTCCAGCGGGCCGATGTCTACGGGCACCGCGCCATCCAGGTGGATCTCGTTCGTGGCGCGCTCCCATGCGGTCAGGTCCTCGGTAGCGGTGTGGGGTGCGTGAGCGCGGGTGGCGCATCGGGCGAAGACCAGGGCCGGGCCGCACGAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAAGAGGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 8171-8563 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000258.1 Actinoalloteichus spitiensis RMV-1378 Contig258, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8171 28 100.0 33 ............................ GCTGGCCCTCATCGTCACCGCAACCGGCCTCGC 8232 28 100.0 33 ............................ GACGCGGCGACGGCTGAACGCATGGTGTTCGGC 8293 28 100.0 33 ............................ ACCGCGCCGATCCCGAGGCATGCCACTATCGGT 8354 28 100.0 33 ............................ GACCCGTCTCGACCAGCCAGGCCACCGCCCGCG 8415 28 96.4 33 ........T................... GGACGGACGCTGGCAGGACATGGCAGTGTTCGG 8476 28 100.0 32 ............................ GGCGCCGATGATCAGGACGTTCGGTACGTCTT 8536 28 96.4 0 ...................A........ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 GTCCGCTCCGCGCAAGCGGGGGTGAGCC # Left flank : TCTGGGACTTACCCGGGGGGTGGCGGAGGGCAACGAACCCCCTCGGGCGGCGGGGGAGCGTGAGCTGGTCGAGGAACTCGGGCTCGCCGTGGTCGCGGGGCGGGTCCTGACCCTGGACTGGGTGGGCCCCCACGGGCCGTGGGACGACCTGCTCGTGTTCGTTTTCGATGGCGGAACTCTGTCAGCCTCACAGGCGAGCGGGGTTCGGATCTCGGATCCGGAGATCGGCGCGTTCGCCTTCGTCGAGCTCGCCGAGGCCAAGAGGATGCTTCGGCCTGATGTCGCGCGACGGTTGGCTCGTGCCCACCGCGCCCTGGAGGCTGGATCCACGGACTACCTCGAGTGACTCTGACAGCCCCCGGGAGGCACCCAGGACCAGGGACCAGGGAACGGGACGGATGGACGGCACCGTGATCGACCCGCACAGCCGACTTCGCGAATCCACACCAACGAGACATTACGAAATGGTCACGCGCTAATATCGGTGCAGGTCGGAAAGG # Right flank : CCCCGGGCACCCACCTCGACAAGCGGTCGAAAGAAGGCTGGTCCGGAGTGACGACGAGCAGGTTGTCCGGCCGGGGGCTGGGCAAGCACATCACCAGCATCCGCTACCGCAAGATGCTCGCCGACTATTACGCCCCGCCCCCGAAAGTGCTGTTCGCCCACCAGGACCAACAGCTCACGGCCGGATCCGAGACACCACGCCTGCTGGTCGGCCACCACGACCTGCGCGGGGCCATGACCGAAGTGGTCCGCGACGCCGGCCAGTACCTGGCGGTCGTGGGGTCCCGCTCACGCGACGCGGCCTACCTCGACGCGATCGAGGCCGTGCTGGTGCAGCGGCCCGAACTGGTGCACTACCGGGTGCTGTTCGGCCCGCCGCGCCACCAGGTCCTCAAGGACCACCTGTTGCGGCTGGTGAAGATCCGCGATCCGCACGACCGCAGCCTCGGGTTGAAGACGCTGCACATCGGCATTGTCGAGGACGACCCCGGAACCCCGGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2260-1619 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000250.1 Actinoalloteichus spitiensis RMV-1378 Contig250, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2259 29 96.6 32 ............................G CAGCACACCTGAGAGGGAGATGCACCATGGGA 2198 29 100.0 32 ............................. CGAAGACCTTTTCGTTGCAGCTGATCAGGGCC 2137 29 100.0 32 ............................. GCCATGCCGTCCACTGTGGACGGCTGGTGTCA 2076 29 100.0 32 ............................. CGGGACTCCCACGGCGACAGGCCCAGCACCGC 2015 29 96.6 32 ............................G CCACCGCGGAGCCGCTCGGTCGCCTCGACGTA 1954 29 96.6 33 ............................G TACGGCGTCGTCACTCTGTGGGCGACCCAGGCG 1892 29 96.6 32 ............................A TCTGGGTGGCCCACCCCGGCCGGTGGTGCATC 1831 29 96.6 32 ............................A CCGAGGACATGGGCGATGAGGACGGATCGTGG 1770 29 100.0 32 ............................. AGCCAGCCAGTGTCGGGCGGCCAGATGTCCAC 1709 29 93.1 32 ................A...........G GCGAGCGCGCTCACCGTGCACCCCCGGTCAGG 1648 29 100.0 0 ............................. | A [1622] ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.8 32 GTCTTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : TTCCTGGGGTGCAGGGCCTCCAACAAACCCAGTACGGTCCAGCAGCCGATGACGGTGCCCTCC # Right flank : ACCGCACCAACTCCGCCCCGTTCGCTGTTCCCGGTCCTGGGGGGTCCTCGTTGGGTGGGTTTGGTGCCCGGGGGCGCTGTCGCCGGTGGTGGCCAGCGGTGGTGCTATTCACGCTCGCGTGGGCGCTGGCGGGAGCGGCCTGTCCTGACGTCTGCCGTTCCGGGTGTCACGAGGACTGGGTAGCGACATGCCCGGCTCTGCTCTTGAAAAACAAGTGTGGAGTTGTACGGTGCCAGCATGCGGACGTACGGGGACGCGTGCGGGATCACCCGGGCGCTGGATGCGGTGGGGGAGCGGTGGGCGCTCCCGGTCGTGCGGGAGCTGGTGTTCGGGCCACGGCGGTACTCGGACCTCGCCGCCGCGCTGCCCGGCGTGAGCACGAACATCCTGGGCACCCGGCTGCGGGAGCTTGCCGAGGTCGGCGTGGTGGTCCGGCGGCGTCTCCCGCCGCCCACGCCGGTCGCGGTCTACGAACTCACTGCCTGGGGGCGGGCGCTCGA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6161-5826 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000238.1 Actinoalloteichus spitiensis RMV-1378 Contig238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6160 28 100.0 33 ............................ GGCGCGGATCAGCTTGGTCGGCGCCACGCAGGG 6099 28 100.0 33 ............................ GGACGTGGAGCGCATCGGGCGGCTTCTGCTGGA 6038 28 100.0 33 ............................ GTCCGCCCGCCGGCAGATCGGATTCGATGGCTA G [6021] 5976 28 100.0 33 ............................ GACTCCGCTCCGGCTCGTCTTGACGTCGAGGAG 5915 28 100.0 34 ............................ AGCTGGGGCACCCTTCTTGCTGTTCGAACGTCTG 5853 28 92.9 0 ......T......G.............. | ========== ====== ====== ====== ============================ ================================== ================== 6 28 98.8 33 GTCTGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GAAGGATCGGACCCGAGACCGTGATCGCGACCACCGTGCATGCCCTCCAGGTCGTCGACGAGGACCTTCCCGAGTCGGACCACGACGTCAGCGTGGACCTGATCGTCACCCCCGAGCAGGTGATCGAATGCGGCCCGGGGCGACGCCCGGTGGGGCTGATGTGGGAGCGGCTTCCCGCCGAGAAGATCGCCGCCATCCCGGTGCTGCGACGGCGCGCCGCGGACCGGCGGAGCCGCTCCACTCACCTGGGTGACGGACACCGACCCGGCCGGGGATGAGAACGTCATGATCGACGAGGAGAAGCGTGTCGGCTACCTGGTCGAGGCAACCGCGACGCGGGGGTGCAAGCGTGTCGCGGTTGGCCTGCTGGGCCGCGACGAAGCCGGTCGTCCTCTGCTGGGGGCGTGCAGCGTGGCCTACCCGTTCGTACGACTTCGCGGAGCCACACCAACGGGAGATCACAAAATGGTCACGCGCTAGCATCAGTGCAGGCGGTAAGG # Right flank : GTGCGCTGCCGACTTCCGGGAACGCGGGTCATCCGACGGGCTTTCCCGCCTGGGCATCCGCCACCAGTGAAGCCCGCGCGCGGGCAAAACCTGTTCGCTGGTCGGACTCCGGGCTCGGGCGCCCTCCCCCACTTTCCACACGAGGCCCAGGCGGTCGCTCAGGGCGTCACCTTTCGGTCCGGCTGGCCCAGAGCAGAACCGGCACCAACAGGAGGGCGAGGAGGCCGCCGGCGAGGGAGAGGACCTCGTAGCCGCCGGTCGCCATCACCACACCGGACATCGCGCCGCCGCCCGCTCCGGCGAGGGAGACGAGCACGTCGATGCTCCCCTGGGTTCGCGGCCGGTTCTCCGGGACGGTCGCGTCGACGACCAGCGCGGTGCCGGAGATCAGTCCGAAGTTCCACCCGATCCCGAGCAGGACCAGTGCGAGGATCAGCAGGCCGAGCGAATCGCCGGGGGCGAGCGCGGCGACCACGCCCGCCGCCAGGAGGGTCACGCCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6719-7273 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000233.1 Actinoalloteichus spitiensis RMV-1378 Contig233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6719 30 100.0 36 .............................. GCGACGGGGATGGTGAGGACGACGTTGCCGTCCTCG 6785 30 100.0 35 .............................. ATGGTGGTGACGTTGGCCTGGCCCAGCGCTTCGCA 6850 30 100.0 37 .............................. CGTGTTCCTGCCAGGCGGCGGGGAGATCCGGCCGTCG 6917 30 100.0 35 .............................. ACCCGACCCGCGCCCCCGACCCGACCCGGGTCGGG C [6931] 6983 30 100.0 36 .............................. GAGCGTCACTCGGCTTCCGCGACAACCAACCCATGA 7049 30 100.0 35 .............................. ATCGGCCCACACGCCGCGCACCGCCGGCGGGCGGC 7114 30 100.0 34 .............................. CCGCTGCGGACACCGCTCTCCGGTCCGTGCTGGG 7178 30 100.0 36 .............................. AACGAGCAGTGACCACCAGGGCCGCCCCGAGTTCCG 7244 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTCCTCATCGCCCCTAAGAGGGGTCACAAC # Left flank : TTCACCCGGCCACTCCAACTGCTCGCCAGGGCGATGTCCTTCACCGATCCCGTGACAGGTGAAGCACGCCGGTTCGAGAGCCGGCTCACGCTCGGAGCCTGGGACGACTACGAGACCTGGTCCGGCGGCAGCCCCGACCCGCTCCCCGCCCCGTTGGCGAGCCACCCATGGAAGCGGTCTGGATGCTGACCTTCGGCGCCTCCGCCTACCACTCCCACTCTCCGCGATACCGTGTCTCCGCACCGTGCGCACCGCCTCAGCTCCACCGCCCGGCAGGTCTTCCTCGGCGTGCGAGTCAGCTTCGAGAAGGCCTCGTACGACAGCGAGAAAAGACAGCGGACGACCGCTGGGATGCTCCGACCCACGGGCGAGGAGCAGCCGCAGGTCCGCGTACCATTTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAAAACAGCCGCGAAAAGCCGCTCGTGGACAGCCTCCCACCTGCGGCTTTACTCTCGG # Right flank : CAGAATCGTGATCGGCGGCAGCCCGAAGTCCTCGAGGTCCTCATCGCGCAACACCGGGGCCGACCGGGCGTAGCGGCGTCCAGGGGTCAAGCCGCGACGGCCTGCACGGTCGGCGGACGTCCGAGCGAAGAAACCCAGCGCGGGAAGGGTGTTGGCCGGCAGGCGTGAGGCTCCCGCTCTTCATGCTCGCTTCCGGTTCGGGCGCGGACAGTGGTACTCCGCGCCCGACCCCACGGCAGGGCGCCTGACGCGGGACGGCGCTGCGTCGGCGGTCAGCGGTGCCCAGAGATCAGCGGCGGATCCACCCGAAACCGCCGGAGTTGCGGGCACCGAGGCCCCAGGCCCAGAGGGCCCGGAGGGAGTCGGGCTCGCCGTGCACCCGCACGCTCACGGTGGCCCCGGCCTGGCGGCCGCGCCCGATGGCGAAGGACCTCTTCGGTCCGGTGGGAGTGACCTCGCTGAGCTTGATGTCGGAGTCGAGCTTCAGCGTGTCGAGTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAAGAGGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 5408-4955 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000173.1 Actinoalloteichus spitiensis RMV-1378 Contig173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5407 28 100.0 33 ............................ GCTCGAGACGAAGGAGACATGCTGTGACCAGGT 5346 28 100.0 33 ............................ GGGCCGGCGGATCGTGGTCGGGGCATCGCCGGA 5285 28 100.0 33 ............................ GATCCGGGTGCACCGGTTCGCCGCCGCGCCGTC 5224 28 100.0 33 ............................ GGGCTACCCCCGGGGATCTGAACTCCGCCGTCG 5163 28 100.0 33 ............................ GCAGCGCGACCAGTTCCGCACCCCGCCCGTAGG 5102 28 100.0 33 ............................ GCGCCCGAACCGGTCCGGCGGCGGCGCCGGTGG 5041 28 96.4 33 .................A.......... GACGACGTGGGCGCGGCAGGCCGCCCTCCAGCT 4980 26 85.7 0 .....T..........T...--...... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 33 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCGTCGTGGTGCTCCCGGGTTCCGCCTCGGCGATGCGCGGCCCCGCACCGGGGCTGTCCGGTGCCGAGGACCGGACCTGCGGGCGGGCGTAGCCAGCGGCCGCCGTTGGTGGCCTGGCACCACCGGCTGGTGTGCCGTTCCCGCGACGCGGTGGGCACGGCAGGCCCGGTCCTCGGGGGTGGTGCTCCGCCTGCGGGCCGCCACGGTGGTCGCCAGTGGCGGACGGGGACGTCAGCTGGGGACGTCGGTGGGCGTGCCCTGATGGCCGGGCACCGGTGCGGGCGTTGGGGCACGGGGGCCGGCGGTGGCGGCGGTACGGTGGGCGACGTGATGAGGCCGGCGGTGGCGAGTCGCGGCGGTCGAGGGCACGGTCGCGAGTCCAAAGGGGACCGGCCGCGCCGGGAAGGGGCGGCCATCACCGGCACCGGCGCCAACGGTGGCGCCGAACCGCCCAAGGTCAAGAAACGGTAACGGCCTTCCATTGGCGCAGGTCGGAAAGG # Right flank : GCGTCTCGCGACCGGGTACCCGGTCACCCCTCGGCGGCGGGAAGGAGCGTGTCCGGAGTGATGTTCCGGTCCCGGCACGGGGCTGGTGGTGCGCCCGTGCCGACCCACTGGCCGGGCGGCACAGAACAGCCCCCGGCTCCGCGTGGAGTCGGGGGGCTGGTGGGGCCGTCAGTGCAGGCGACCGGCCTTGACGGCGTCGACCAGGGCCGCGAACGCGGCCCGGTGCACGAGGAGTGTTCCGCCGTCCCGGTTCTTGGTGTCGCGGATGCCGACGACCTCGCTCGCTCCCGTACCGATCTCGACGCAGTTGGACGACGAGACGGATCGTCGAGGTTTGCGCCACCGTGTCACAGCTCGCCCTCCAGTGCGCGCAGCCGCGTCCGCGACTCCTCCTCCGACAGGGCCACGCCGAGCAGGTGGTCTCTCGTCGCGACCACGGGTGCGACGTCCCGTTCGCTGTACAGCCAGGTGGATGACCGGTAGTGCTCCAGGTGCACGAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72-221 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000822.1 Actinoalloteichus spitiensis RMV-1378 Contig822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72 28 100.0 33 ............................ GCCGAGTACACCGCCGCCGATCAGGCGCCGCGG 133 28 100.0 33 ............................ GTCAGCTCGCCGAGATTCTGCGCACGGGCGGTT 194 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : AGCGTGGGAGGCAGGGCCTCCAACACCACCGGGGCGGTCCACCACGTTGAACGTGTTCCGCGCCCGCAGGGG # Right flank : GCAACACACCGTGTGGACCGCCCCGGTGATGTTGGAGGCCGTACCTCCCACGCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1818-1179 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000172.1 Actinoalloteichus spitiensis RMV-1378 Contig172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1817 29 100.0 32 ............................. CCGCCGCGCAACCGCTCCTGAGCCTCCCTGTA 1756 29 96.6 32 ............................T TGAACACGCGATTCTAATTCCCGGCATACTCC 1695 29 100.0 32 ............................. CTGACCGGCAGCCGGCTCTGTCTGCGAACGGG 1634 29 96.6 32 ............................C TCCGTCTGGAGTTGAACCGCACGTGCGAGCAG 1573 29 96.6 32 ............................C ACCGCTGCTGGCTCGCCGCGAAGGACCTGCCT 1512 29 96.6 32 ............................C GACGGCCTGGGGGCGGCGACCAAGGCAACGGC 1451 29 100.0 32 ............................. GTCCGGCTCGATGCTGCGCGCAGCGCTGGCCG 1390 29 100.0 32 ............................. TCTGCACCGCCGACCGGCCGGTGTCCTCCATG 1329 29 96.6 32 ............................C GGGCGCGGCTGGCCGCTGGAATCCTGCAGGTA 1268 29 100.0 32 ............................. GGCAAGCGGGCGCGGGTGGTGCCCCTGATCGA 1207 29 72.4 0 ............TC.C.CT.....A.GT. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.9 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : AGGGCAGTTCCTGACCTGAATTCCGGGAGAAGGCGAGTCTGCGGACATCGGAGGGTGGCTGCTCCCCGTGGCTCGCACCACCGAACCGCGCGGCGTGGACAGCCCGCTCTGGTCGAATGTGCCAGTGGTCGTGAAGACCAATGCCCGTGGTTCGAGGTGCGAGCGGACGAGAACTCGCAGGTCAGCTGGCGGTGCGGGGAGTGGGCGCTCCGGGGCGCGGGAGTCGTTGTCGTGGATGTTCCACCAGGTGCGGCCTGACTTGGTGGAAAACACGAAATGCGGACAGTTCCTTGCTCGCGGGCTCGCGTGGTCGAGCCGACACGACTGCCGGACCAGGAAGCCGGGCCGCGACAAGCCCGATCGAGCGGCAGCGGGCCAGGTGAACGGCATGGCGGGGGCACGGCATACTGTGGGCAGGGAGGATCTGTGCGATGCGGGAGACCGTCAGGAAAGTGAATGAGAATCGGTCGTGTCGCTCGTAACGTCGCAGGTCAAGAAGG # Right flank : GGCAGTGCCCTTGGCCGCGAGGTCGTGATCGCGGAGGAGGCGAGCCGCGCCCCGCCAGCGGTGTCCCACGACTGTTCGTGGCAGGCGTCCCAGGGTTCAGCCGGTCGCCTGGTCGCGGTCTCCAGGTGCGGTACCTCGGCGACGGGGTGGAACGGCGCCACCCGGTGCGGGGCTCCTCCTGTCACGACTGTCCCGACGGTGGTTCCGGGCGGGCCATCCGCTCGCCCGGGACGCGGAGAGCGACGGCCCACCAGGCTGTGGTCACGGATGGTGATGATCAGGTGGTGCGATGTTGGCCAATCACCGATTCGCCAACGAGGTAGTGAGGTTTTCCTTACTGGTCGCGGACATAACGTTCCCCCAGCAGGGGGGTGTTGTACCGACAGGAGGAGGACCATGGAGTTCGGAGTACTGGGGCCGCTGTCGGTGTCGCGAGGTGGCGCACCGCTCCCGGTGTCCGGAGTGCACCAACGTGCCGTTCTTGCCTACCTGCTGCTCCA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6353-5808 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000105.1 Actinoalloteichus spitiensis RMV-1378 Contig105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6352 37 100.0 34 ..................................... TCCTTCTGTGTGTGTGGGGGGGGTCAGCTCAGTG 6281 37 100.0 35 ..................................... TTCAGATGGTTCTTCCTCTTCCTCTTGTAGATCTG 6209 37 100.0 35 ..................................... GACCTCCTGATCCGGACCCTGGCCGCCCGCATCGG 6137 37 100.0 38 ..................................... ATGTCTACTGAGGCGATCCATGCGGGTCAGGCCCAGCG 6062 37 100.0 34 ..................................... GACCCGCCGCAGCGCCGGCACCACTCGCTGCACA 5991 37 100.0 35 ..................................... CCGTCCACGTCCTCGGCGATGGCCATACCCGTGAC 5919 37 97.3 38 ............................A........ CGGGTAGGTAGCCGGCCCTCGGTCTCCGCGAGCTCGCG 5844 37 89.2 0 ..........................C.....C.G.T | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 98.3 36 GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : AACCGCCGCCAGCGGGGATCGTGCGACCGTCCAGTGCGTACTCCGGAGCGCCCTTCCCGGGTGTCGGTGCCCTCCCGTTCACTGATGTCCGGCGCCGCCGGGGACCGCCCCCGCGCGGTGTGGAGTGGACGAGGCCGTACGGGATTCCGCTGAGCGTCCGGGGCCCCCGCCATCTGCGTCGCCACGACAACGAGGTGCGTCGCGGCGGGAAGGCTGTGGGCGGGGGCAGCACGGGAGCCGGACCACCGACGGAGACGGGGGGACGGACGCCGTGCGGCGGGCGGTACCGTGGAGCTGCCGTGCTGGTGAGCGGCGGCCGTGCGTTGAGGCCGCGTCGGACGACGGCGCGGGTTCGGAGGGTCATGATCCTGCTTGGGAATCGGAAGCGTCACGCGACACGCCTGACCTCTCCCAACCAGATCCCGGGCGTGTCGCCCGTTTTGCCCGTTCTTCCTGCGCATGGTCGAAGGCGTAATCTGGAAAACCGCTGCTCGCGCAGC # Right flank : CGCCAGGCCACTGAGCTGAATGGTCATCGACAAGCACCAAGACTGGGCGAACGTGTGTGACCAACTAATTCAGGCGCTGATCGTCCGCGAGCTCGTGTCCGACTTCCTGCTCAGCGTCCCTGAATCGGGCCGGCCAGCCGGGGGCCCACCTCCGTGACGTCGGCCCGTTCGTGTTGGATGACCAGATCCCGGTAGGGCAGGCGTACGACCGCGCAGTTGGCCAGACCGAGCCGCTGCTCCACCCCGTTCAGCAGTCTCCCCGCCACCTCGGGGTCGGTGGCCATCACCTCGGTCTCGGCGAACGCACCGACGCCGGTGATGAGGTCGATGACTACGGTGACGTCGTCGCGGTCCGGATGCCGGAAAGTGGTGCGAGTCTTCTCCACCCGGCAGAGCCTCACCATGCCCAGTACGTCGAGCAGCGTACTGGCCGCCGTAGCCTGGTCCGGGCCGGAAAGGATGACGTTGGTTTCGGGCTTGGCGATGATGTCCGCGGCCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2812-3145 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000103.1 Actinoalloteichus spitiensis RMV-1378 Contig103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2812 29 100.0 32 ............................. GAGGAGTCCAGCCATGCAGCCTGACGCAGGCT 2873 29 96.6 32 ............................C CTGGCGTGGTGCACCGTTTCGGCCGGTGTCGC 2934 29 96.6 33 ............................C TATGCGGATGAGCTGGGCTACTGCTGGCCCAGC 2996 29 100.0 32 ............................. CGGATGGAGTCGGCCTCGGCTGGGCCGTTGTT 3057 29 100.0 32 ............................. GAAAGTCCCTCCTCGGGCTGAACGTCGCACAG 3118 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 6 29 98.3 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : TCCTGACCTGAATTCCGGAGCGGGAGGGGGCGCGGACGTCGGAGGGCGGCCGCTTCGCGTGGTTGGCGCCGCCGAACGGCGGCGAGCTCCGCTCGCGTGCGTCGGTGGTCGTGCCGGCCTGTCTCCGTGGTTCGCGGTACGAACGGGAGAGGACTCGCAGGTCGGGGGTGGTGCGGGGGAGTGGGTACCTCAGGGACGGGCGGGAGCGCCCGATGTTGTGGACTTTCCACCAAGCATGGCGTGACGTGGTGGAAGACGGGAATCGCGGACAGTTTCGTGCTCGTGGGCGGCGCGTGGTCGAGCGGTGCGGATGTTCTCGCGGTCGCGGGAGGACGGCGGCAGGGCGTGGGGACGCCTGGTGGAGCGGTGACCGGCCTGCTGAAGGGCTGTGGCGGGTGGACGGGATACTGTGGGCAGGGAGGATCTGCGGGATGCGGGAGACCGTCAGGAAAGTGAATGAGAATCGGTCGTGTCGCTCGTAACGTCGCAGGTCAAGAAGT # Right flank : | # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7659-7808 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000076.1 Actinoalloteichus spitiensis RMV-1378 Contig76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7659 28 100.0 33 ............................ GCTCGTGCCGGGTGCGGTGGTCGACGGCTTCGT 7720 28 100.0 33 ............................ GGACGAGGGCGCCCCCCTCGCGGACCTGCTGGA 7781 28 96.4 0 ....G....................... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 98.8 34 GTCCACCCCGCGCAAGCGGGGGTGAGCC # Left flank : GTGCTCAGGCGTCGCCGGAGGTCAGGTTCGGTGGCCACCCGCAGCCGCCACGGCTGCCTGTTGCGGGCCGACCCGGTCCACCGCGCGACCTCGCAGATCGAGCGGATGTCCCGTTCGGCCACGGGTTCCTCGGTGAACCACCGGGTGGCCCGGGGCGTCCGCAACCAGTCCAGCAGTTCTTCGGCTCGCGACACCACCCCAGTCTGCCCGGGGCACGTTTCCGTCGGATTCACCCGGCGCTGCGGGGTGCTCCGTCAAGCCTGCGGGTAGGGGGTGACCCCGTCGTTCTCGCCGTACACCTCGTCGGCCCACGAGCACCATTCGTTGCGCTTGGGGCCACGGTGGATATGGCCTGCGCGCACCCGGATTCCCCCTCCGCGTCCGAACGACGCGCCACCACGTCCGGACCAGCACCGTAGGCCGGCCCACACGACAACGAGACCAGAGGAACCCAAGATCACAGAATGATCACGCGCTCGATTGAGCGCAGGTCAACAAGG # Right flank : CGCGAGTTGTGGAGATGCAGCTCTTCCCCTGCCCGCTGAGCTGGACGACCCCGGCGAACAGCCACAGGATGTTGCCGGCGATTCCCGCCCGTTGCGGCGGGCGACGACGGCGTGGGCCATGCCGTGCACGACTTCGATCTGCAGGACCAAATCCTGAACCTGATCTTTTCTGAGCCACCCAGGTTACCTCGCGCGGCTTCCTGTGGGGAGGCTGCACGAGCGTGATCATTGACGCGCCGAAGTTCTCGTGGTGTGGAAGACGCACCCCATGAGCCTGCTGCGAGCTCGACCCCGGGGCCACGTCCAGATGTCGAGCGTGCCCCTCGCCGGCCAGGACTCCGTTACTGGAGGAGGAGAGCAGCTGGGTGACGTCAGGGCGCGGGATGACAACTCCTCGACAGGTGCCCGGACATGGAACGGCCCGTTCGAGGGAGGTCCGCCTGCGCTTGCGGCGCGGGACGTCGGAATCCTGATGGTTCCGGCTGTCCGTCCAGATCCTC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8864-10665 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGVX02000010.1 Actinoalloteichus spitiensis RMV-1378 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8864 37 100.0 36 ..................................... GACCAGGGAGACCCGATCGTGTACACCGAGCACCAC 8937 37 100.0 37 ..................................... GGGGACCTCAACGCTCATCAGCATTACGTCAGCCCCA 9011 37 100.0 38 ..................................... CTCGTTGAGCGCCGACCCGGGCCGACCCGGGACGGGGA 9086 37 100.0 37 ..................................... GGCGGCGGGGCGATGGTGGCGGATTCGAGGTGGTCGA 9160 37 100.0 36 ..................................... TGGTGCTCCGAGATGTCCAACCGGACCGGGAACGTC 9233 37 100.0 37 ..................................... GTGTCGTGTCGTGTCCTTGGTCTCCCGCGGAAGCCCG 9307 37 100.0 37 ..................................... ATCTCGTCATCGGGATTCGGAGGTGGCGCGGCCTCGG 9381 37 100.0 37 ..................................... GTCGGCGTCGTGCGGAACATTGTCGATAGGCGCACGA 9455 37 100.0 35 ..................................... GGTGGTCAGCGCGTAGCGGGCCGCGTGGATCTGGG 9527 37 100.0 35 ..................................... GACGTTTGGGAAGTCCGGGGCGGAGGCCGTCCGCC 9599 37 100.0 36 ..................................... GAGTGGGAGGACCTCGACGGCTCGACACACCGCGTG 9672 37 100.0 39 ..................................... CACCGCAGTAGCCGCGAAACAGGCCGGGCGGCGTTGCGT 9748 37 100.0 38 ..................................... CCCTTACCTCCTGCGAGTGGGGAGATCCGCACCGGCCT 9823 37 100.0 35 ..................................... GTCGCCGGAGCTGGAAGTGAATCGATTCGGCCGGA 9895 37 97.3 36 ....................................G ACGTCCTCGCCGAGGTGTGGCCGGCCGCCGCATACG 9968 37 100.0 38 ..................................... AGGCGGTATTCGGGCAGCGTCCGCCCGGATGCTTGGGC 10043 37 100.0 35 ..................................... GAGAGGACAGACGGATGACCGAGACCGAGACCGAC 10115 37 100.0 34 ..................................... GCCCGGAACCGGCCACCGCCGCCGCCCCCTACGC 10186 37 97.3 34 ....................A................ ATGCTGGTGGGACGCGGCGCGGTGTACTCGCGGA 10257 37 100.0 39 ..................................... CCAGGTCCTCCCCACCGAGGAGATGGCGGCCCAGGCATC 10333 37 97.3 38 .....................G............... ACGACCTCCAAGGCATCCTCGCCCGCGAGCACGGGGGC 10408 37 100.0 37 ..................................... GGCTCCCGCAAATCAACAGCCTCCTCCGGGCGTAGTG 10482 37 94.6 36 ................A....T............... ACCGCCGAAGCGACCATCTTGCGGCAGCGGGACGCG 10555 37 91.9 38 ................A...TT............... CCGTCGGGGCCCGCGCGGCAGCGCCCGCTACCGCGACT 10630 36 97.3 0 ................-.................... | ========== ====== ====== ====== ===================================== ======================================= ================== 25 37 99.0 37 GTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Left flank : GGGAGGGTCAGCGGCGGCTGCGCAGGGTGGCGAAGATCTGCGAGGGCTACGGGCACCGGGTGCAGAAGTCCGTCTTCGAGGTGGTGTGCCGGCCGCAGGACTGGGTGTTGATGAAGCACCGCCTGGCGGAGGTGATCAACTCCGAGCGGGACAGCATCCGCGTCTACCACCTCGACCGAGGTTCGTTCTCCCGCGCCGAGCACATGGGGGCATCGCGGCTGGCGCCGCACGAATCGCCTCTGGTGTACTGACGGTGCTTTCCGGAGACTGGACAGGAAGGGCAGTCGTGACAGGGCATTCCGCTGGTGCGCTCGCAGGCCGGCCGAGCCGGCCCCAGGGTGGTGCGGATCCGCGCCGTGTGCGGTGTGGAGTTCGCGCGGATCGGAAGCGTCACGCGACACGCCTGGACTCTCCTAAGCAAATCCCGGGCGTGTCGTCCACTTTGTCCGGTTTGCGGGAAGCTCGTCGCAACACGAAATGGGAAAACCGCTGCTCACGCA # Right flank : CCTGCTGATGCTGCCTTGGTGACCACCAGGGGCGCGCGTTGCGCCGGTCTTTTTCCTGACGGGACTGCGAGGTGCCGGGGCGCCCTCCGAAGGGCACGACCCGGAGCCTCGCGTGTTCCTTCGTGCGGATCGTCGTAGGCGTCAGACCCCCTCTGCTGCTCTCGCGATGAACTCTCCCGCCTCCTTCGGCGGGGTGAGCTGCGGGGCAGCAGGAAGTGCTGCCGAGCAGGGGGAAGGCAGAACGCACACGAACTGATCGCCACCCACGACCACGGTCACCGCTTTCCCGCCCAAGGCGGGAAAGGTGCTGACCATCAGCGATGCCACGGGTTCCGGCCCAGGCACGATCGCCGTCACGACCGCTTCCCCGTCCGCCACCAGCAGGGCACCCGCGACCCGTCGGGCCTGCATCACCGGCAGGCCCACGGGTTCCTCGGGCGCGTGCTCGGGGCGCAGGACAACGCCGAGCCGGCTGGTCTCCACCAGCACGGACACCGGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //