Array 1 327835-331261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBBY010000003.1 Bifidobacterium longum subsp. infantis strain ICIS-1113 NODE_3_length_386981_cov_237.629426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 327835 36 100.0 36 .................................... CAGCAGTCTCGTGGCCCAGCCGGACGTGAACCGTTC 327907 36 100.0 37 .................................... AGGTCGGCGGCGCAACTCACGATGCAGTCGGCGCGAA 327980 36 100.0 36 .................................... ACATTGGTACGTACGCCTGAAACGCCGTTGACCGAG 328052 36 100.0 37 .................................... CGAGGCCGGCGTGATGACCGTGGACGAAGCCCGCTCA 328125 36 100.0 35 .................................... GGTAATGCGTTTGAGTGGCGTGCACCGTGCCGCCC 328196 36 100.0 35 .................................... TCTGGTGGGGATCATGACCGATACCGATCCATCCT 328267 36 100.0 36 .................................... TCGGGTACCGCACAGCAAATCCACACTGAAGCGACA 328339 36 100.0 38 .................................... TCCAATCATCATCACACCAAAGGAGCAACAATGGAAAA 328413 36 100.0 37 .................................... GGAGTCCCGACCGTATGGTTGCAATTGGACTGAGATG 328486 36 100.0 36 .................................... TCCTCCATTCGGTCCATCTCGTCTTGCAGCAGTCTT 328558 36 100.0 38 .................................... GTTGATGATCTTCTGGTTCGCTCCGTCGCGCCCGCCAA 328632 36 100.0 36 .................................... ATGCTGGAAGGTAACGGCGTAGGGCATGGCAGAATC 328704 36 100.0 36 .................................... TGGGTGCCCTTGCGCCAACACTGTCTTTCGCGCAGC 328776 36 100.0 36 .................................... GACTACAGCAACGCAGAGACCGCCGAACTGAACACC 328848 36 100.0 35 .................................... GTTGGGAAAACCCACACGTTCGTCCCCGTTGGATA 328919 36 100.0 34 .................................... GCACAAAAAGCTGCCCCCTGCTCAGTGGCGGGAT 328989 36 100.0 37 .................................... CCGGACGTACTGGTGTTCTTCAATGAGACGGCGAGCG 329062 36 100.0 36 .................................... AAGCCCCACGGACGTGCCCCGCCATACTCAGGAGAA 329134 36 100.0 40 .................................... CCGCTCCGGCGGCCAGAGTGTTCGTGGCCCATGAATGGCG 329210 36 100.0 37 .................................... TCTGTCGAGTCGCATTCCGCCGATGACGCTGCGGACG 329283 36 100.0 38 .................................... GCCACAACATAGGGACAACCATAATGCGCGCGTTCGGG 329357 36 100.0 36 .................................... TCGGGAGAACCGTCATACACGGCCCAACTCGGCATA 329429 36 100.0 35 .................................... TCGACCTTGGTCTGGGAATTGGGCACTTCGACGTA 329500 36 100.0 35 .................................... TCGTTGGCGGTGGTCCAGATGCCCATCAGCGAGAA 329571 36 100.0 35 .................................... GAACGCGACTATCCCGCGACTCATTCCGAGGCCGG 329642 36 97.2 36 .....................T.............. AACATTGGGCACCGACCCGGGTGTTCTGGTTACGGA 329714 36 100.0 36 .................................... ATAATAGTAGGGCCATACACCTTATTAGTGCATGAC 329786 36 100.0 37 .................................... CCGTTACAGGGCGTATGGGGTGGCGTGAACAGGAGTA 329859 36 100.0 37 .................................... AAGCCACATCAGCCGAGAACAATGCGTATCCTTCTTC 329932 36 100.0 38 .................................... CCGCCAGCAGCGTGCACTGTTACGAGGCTTCTACGGTC 330006 36 97.2 37 ................T................... GCGTTCCAACGGTCCATGCTGCCGTTGCCGTGCGGCG 330079 36 100.0 35 .................................... ATGTTGTCGAATCCACGTTTCTTTCTCTTGCGGTT 330150 36 100.0 37 .................................... GTTACCGGAATTGTCAAGGCGATACTTGGGCAACGCA 330223 36 100.0 36 .................................... AACCAGTTCATCGACATCCTCGTAAATCGTATCGGC 330295 36 100.0 35 .................................... TACGGTCACCAGTACCAAGTCACAGGGTATGAGTG 330366 36 100.0 37 .................................... GTGGCTAGCGCTAACGGTAAGTGTGTTGTCGCGTATC 330439 36 100.0 35 .................................... TCATCGACCACGTAGTCAAGTCAAAGGACAACCGG 330510 36 100.0 36 .................................... TAAGCGACCAGGACGCGAGGACCGCTAGCGAACGGT 330582 36 100.0 35 .................................... AACAGTTGCACCATGCAACAATATCCAAACTTGAG 330653 36 100.0 37 .................................... TCGGTAATCCAGCAGCCGGATATGCCGACGAATCGGC 330726 36 100.0 35 .................................... GCGAGTGCGATGTGCATGTTCCCGTCGTTGTCGAG 330797 36 100.0 36 .................................... GGCGCGCGTCTGCACATGATTGTCGTCCCGCCCGGC 330869 36 100.0 35 .................................... CGCAACATCGGTCATACTTGGTTCTGTGTCCATCA 330940 36 100.0 37 .................................... CTCAATATCTGGACTCAGATATACGGCGCGCTGGGTA 331013 36 100.0 35 .................................... GACATGCCGTTGTATCGCATCCCGTTGGACGGTAT 331084 36 100.0 35 .................................... CATGAGATAGGCGTATTGCGATACAAAAAAGCCAA 331155 36 100.0 35 .................................... TTGGTGGGGGCTAGCTCGTCGTGGCATATGCTGAC 331226 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================== ================== 48 36 99.8 36 CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Left flank : TGAAAATCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGTGCGGATGTTTTTTTTGACGGTCAGGCGGCCAGTCCAAGGTGTTTGCGGTATTGCACGGGGCTTATCCAGTCCAGTGACTTCTTGATCCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGCGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCTTACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCTATGTTAGAGGACGTAGCCGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACTATAAATTCGAGCCTGC # Right flank : GAGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCAAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAACAGGTAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTATCTGCCCTAATTAGAGTACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCCGTGCGGCCGAAGTGACCATACGCGGCGGTCTTCAGATAAATCGGACGTTTCAGATCCAGCTCGTCGATAATCGCAGCGGGGCGCAGATCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCTCGCGTCACACCCTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGGTCGGCAACGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //