Array 1 2599-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAKQ01000094.1 Acinetobacter baumannii strain IHIT25424 contig_187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 2598 29 93.3 30 -............................C AACTCGATGTTGGGTATGCAGAGAGCCTTG 2539 30 96.7 30 .............................A ACTTACACTTCTCAGCGTCAAACCATGCGT 2479 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 2419 30 93.3 30 ............................TG GCAGAACTTTTCATGACGCTCATTCTCTAA 2359 30 100.0 30 .............................. ACCTATCAACGTTAAACCAACGATTGCCAG 2299 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 2239 30 100.0 30 .............................. TGGGATGTTATGAATATTCGACATTACCAA 2179 30 100.0 30 .............................. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 2119 30 96.7 30 ............................T. CAAACGCTTCAACCAGCCACGTCTTTGAAG 2059 30 93.3 30 ............................TC TTCCGCCAAATTCTAGGAGGTTAACATGCT 1999 30 96.7 30 ............................T. GTGCATACTTATTGCCGCCAGCAAGTAAAC 1939 30 93.3 30 ............................TC CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 1879 30 96.7 30 .............................A GTTTCGGCCTAATGGATGCGGTCTTGAAAA 1819 30 96.7 30 .............................A GGACTATCCGTCCCTTTGCCGTTTTTGTAC 1759 30 96.7 30 .............................C CCTCGGGTGGTTTTTTATTGAGGTGATCAT 1699 30 96.7 30 .............................G TGGCGCGTTCAAGCGTGCCATTGAAGCATA 1639 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 1579 30 100.0 30 .............................. CCGCCGATAAAACCCTTACCCGATACGCCC 1519 30 93.3 30 ............................TC AGCTCCCGATTCAACATCCAACAACATGCT 1459 30 96.7 30 ............................T. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 1399 30 93.3 30 ............................TG TTGCGCTGTTTTTGAACGTGTAATTGGATA 1339 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 1279 30 100.0 30 .............................. GGTAATACAATTCAATCTCACTACAAGAAT 1219 30 100.0 30 .............................. ATATTTTACGTGTTGATTCAACTACGGGTG 1159 30 96.7 30 ............................T. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 1099 30 96.7 30 ............................T. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 1039 30 96.7 30 ............................T. GCTCATCAATACAGCTACAAGAAAATTTGT 979 30 96.7 30 .............................G CATAAGCATAAAAATTATGTGTGAATATCA 919 30 96.7 30 .............................A TATGCAACAATAGGAAATTGCTCAGCATCT 859 30 96.7 30 .............................G TTACATCATTGCTTTTAGTCTTTTCTATCT 799 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 739 30 100.0 30 .............................. CTGCAAGACCACTGATAGTTGTTGAGAATC 679 30 93.3 30 ............................TG TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 619 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 559 30 96.7 30 ............................T. TTGAAACTTATAGGCTTGGCTTGGGTTATC 499 30 93.3 30 ............................TG AAAGGGATTTAAAAGCAGTTACATAAAATT 439 30 93.3 30 ............................TG AATTGGATTTCGTAAATCATTGAGCAAGTT 379 30 96.7 30 .............................G CATCAAGTAGATCAGCAGTTACCTGTTCAG 319 30 96.7 30 ............................T. CTGTATTAGTGGCCTTCATGTGCATTAAAA 259 30 100.0 30 .............................. ACATGCCCACGTTGAAAATCGGGTACCAGT 199 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 139 30 96.7 30 ............................T. GAAAAAAAGCATCATATTGTTCGGGGCAGG 79 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 43 30 96.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : | # Right flank : TTTTTTCTGTTAACTCTAAAATACCCTTCCGGTTCATGGCGGCATACGCC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1531 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAKQ01000159.1 Acinetobacter baumannii strain IHIT25424 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1 29 96.7 30 -............................. GTACAACAATATGACCCGTATCGATGTAAC 60 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 120 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 180 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 240 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 300 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 360 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 420 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 481 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 541 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 601 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 661 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 721 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 781 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 841 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 901 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 961 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 1022 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 1082 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 1142 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 1202 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 1262 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 1322 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 1382 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 1442 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 1502 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 26 30 94.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : | # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //