Array 1 6336-7218 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGOY01000011.1 Escherichia coli strain MH14-064M contig_7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6336 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 6397 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 6458 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 6519 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 6580 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 6641 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 6702 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 6763 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 6824 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 6885 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 6946 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 7007 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 7068 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 7130 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 7191 28 72.4 0 ..A........C..T..-..T.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20638-19325 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGOY01000089.1 Escherichia coli strain MH14-064M contig_69_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20637 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 20576 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 20515 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 20454 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 20393 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 20332 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 20271 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 20210 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 20149 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 20088 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 20027 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 19965 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 19904 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 19842 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 19781 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 19720 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 19659 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 19598 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 19537 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 19476 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 19415 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 19353 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTCAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //