Array 1 5644-378 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNIX01000089.1 Xanthomonas oryzae pv. oryzae strain GD401 scaffold88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5643 31 100.0 34 ............................... TCCGTTATTGGCCGTGATGATCTTAATGATGGCA 5578 31 100.0 34 ............................... CCGAGTGCCCTCACAATGGTGAGAGTTTGATCCG 5513 31 100.0 35 ............................... GCATTTTACTCGACGTACATTATGTCGGCGGAGCG 5447 31 100.0 34 ............................... AAGGCTACCGGCCAGCTGTCTGGCACGCCAAATG 5382 31 100.0 32 ............................... GACTTGGCTGCGCAAATCTACGACCAATGGGA 5319 31 100.0 35 ............................... ACTGATGTGGATAGTCAGGCTGGCGGCGCCTTACA 5253 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 5186 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 5121 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 5055 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 4991 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 4927 31 100.0 35 ............................... TGGATGTTCGTAGAGTACCCCGAACCGACGCTTAT 4861 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 4796 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 4732 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 4667 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 4603 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 4539 31 100.0 34 ............................... TTTCCAAAGACCCATAGAGTTCAGGTGTGCCGCT 4474 31 100.0 35 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGCA 4408 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 4343 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 4279 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 4212 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 4148 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 4081 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 4016 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 3950 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 3885 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 3821 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 3755 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 3690 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 3625 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 3558 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 3490 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 3425 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 3360 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 3294 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 3229 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 3162 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 3095 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 3030 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 2963 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 2898 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 2833 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 2768 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 2702 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 2637 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 2573 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 2508 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 2443 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 2377 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 2311 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 2244 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 2179 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 2113 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 2047 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 1982 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 1917 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 1850 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1784 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1719 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1653 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1587 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1520 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1454 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1390 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 1325 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 1260 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1194 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1128 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1063 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 998 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 932 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 866 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 802 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 735 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 670 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 605 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 538 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 473 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 408 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 81 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //