Array 1 35620-41045 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017565.1 Pseudanabaena sp. ABRG5-3 plasmid ABRG53e, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 35620 37 100.0 41 ..................................... AGGGTCGTTACGTGAGCGAATTCGGGGCGATCGCCACACAG 35698 37 100.0 34 ..................................... AAGGGGGGGGGAACGCGAAAATCATACGAAATAG 35769 37 100.0 35 ..................................... TTCGAGAGTAGCGCTTCACATAATGATTCTCTTCT 35841 37 100.0 39 ..................................... TAAATCAGTACAGGTTTTTTCCCCTCTCGTTGCTCCTGC 35917 37 100.0 35 ..................................... GGAGCCGCCGCCAACAGGAGCGACAGAAGAGATAG 35989 37 100.0 36 ..................................... TGAGCCAAAATGTGGCAAGTATCGCCCCTTGTATGT 36062 37 100.0 33 ..................................... AAAAACTTGACAAAATCCACTCGATACTGTAAG 36132 37 100.0 35 ..................................... ATAAATTTTTGGATAGGTATAAGCCAATGCTTCAG 36204 37 100.0 34 ..................................... TTGTATTTACTAATTACTTCAGGCTCAATACCAG 36275 37 100.0 32 ..................................... ATTTTGCTGACCCTAATCAAGTCGATTTAGAA 36344 37 100.0 35 ..................................... TGGTAAGAATTCTCCCAACTTCTATAATTCTGGAT 36416 37 100.0 36 ..................................... GATTTACTTACCTTTCTAATTTGGATATCCCAATCG 36489 37 100.0 35 ..................................... GTTTCCATTCGTTTTTCATGCTTAAAGGCTTTAAA 36561 37 100.0 36 ..................................... CTCTATATAGAAGCTAAAGGAAAGTTTCTACCCGAA 36634 37 100.0 39 ..................................... CAATCACCAGAGCTTTAATTGCTTCGCTACGCGCCTTGA 36710 37 100.0 36 ..................................... ATTGGTTGCCATACGTTAATACATACTTGTTTGTGA 36783 37 100.0 35 ..................................... TATACGGTGCGATTAACACCTACAGAAAAAGAGAT 36855 37 100.0 35 ..................................... AGGGATATGCTTGTGAATCTGCATACCCAAGGGCT 36927 37 100.0 37 ..................................... GGGAGAGTTCTTACCAAACCATTTAGAGAGATAAGGC 37001 37 100.0 42 ..................................... TTAACGAGCTACGCAGGGGTGCGCCTCGTGAACCTAATTGGG 37080 37 100.0 41 ..................................... CAATCGCAGAGGATGGTGCAGTAAAAGAGGAGCGAATATAA 37158 37 100.0 36 ..................................... AGAATTGCGGCTAACAAGGGATACTGCTCTGATTTG 37231 37 100.0 41 ..................................... GATACTTTTCTAAATATGCTGGTAAATCAGCAGATACAGAG 37309 37 100.0 37 ..................................... ATCTTCGATCTCGATTTGCCTATTCCTACAGGTATGA 37383 37 97.3 34 ...................T................. CCATCTCTTTCGTTGATTCTACTTTCTGTGTAAG 37454 37 100.0 34 ..................................... CCAACGGGCTACGCAGGGGTGCGCCCCGTGAACC 37525 37 100.0 35 ..................................... CAAACGCTTACTAGGCGAGGGTTTCAATCCCTCAA 37597 37 100.0 36 ..................................... GGAACACTCTCACAGCGTTACAGCCTACAAGGGGAG 37670 37 100.0 33 ..................................... AGGATGATCGCCCACAAAATCTGATTGCATCAT 37740 37 100.0 36 ..................................... ATCAGCCCCTTGGATGCACTGCTGAGCAAGATTAAA 37813 37 100.0 34 ..................................... TTGTTGGCAAGCAGCTTTATAAAAGACATTGCAA 37884 37 100.0 36 ..................................... ACATTAACTGCCAGCGCTGAACACATTACCGCTTTC 37957 37 100.0 35 ..................................... TTAGACAACGAATCTAAAACACTTGCAGAATGGAG 38029 37 100.0 35 ..................................... AAATCTTCCTTCTTCCAGTAATATTGATACGATGG 38101 37 100.0 35 ..................................... GCTGCCTTAGCTAAAGATACGCAAGGCAAAGAGCG 38173 37 100.0 36 ..................................... GATTGTACCGTTTTTTAGCTTAATTATGAACAAAGC 38246 37 100.0 36 ..................................... CGTACCTGCGAGTGTGTCTGGTTTGAGAATCGGAAG 38319 37 100.0 36 ..................................... TTTTTTCTCAGAGCCATTTAGACAAGCCATGCTATC 38392 37 100.0 34 ..................................... GCTGGTGCGCCCTCCCGTCCATATATGCGCTGTG 38463 37 100.0 34 ..................................... TGGATGCTTCCTTTATCCGATTCGTACTTTTTCG 38534 37 100.0 37 ..................................... GGATGGCTCTAATTACCTATGGGGTGACGCTTTCCGA 38608 37 100.0 35 ..................................... TGGATGTCGGTTTGAGGGATTGTTACTGATGCGAT 38680 37 100.0 35 ..................................... TACAGTAGGTGTTCCCATAACATCCTCTGCTTCAA 38752 37 100.0 37 ..................................... TAATGCCAAATTCGCGATTACTCTTAGAAATTTTTGG 38826 37 100.0 35 ..................................... GCTTTAAGCAATCATTTTCCGTAGAATCTGGACAA 38898 37 100.0 31 ..................................... TCCTTTTCAACAATTTGGCGGCGTTTTTTAT 38966 37 100.0 35 ..................................... AGGGGTGCATATTCCAAATTATTGTGAGAGCTTGG 39038 37 100.0 35 ..................................... AATAGGATTAGGAAAGAGAGGCAACCCAAGACGAA 39110 37 100.0 35 ..................................... AGGCGATCGCTCTGACAACCATTGACAAGCAAGTA 39182 37 97.3 42 ..............G...................... TGACCAGTGCAGCTAATGCCACTGTATACCGTAGTGGAACAA 39261 37 94.6 35 ........A.....G...................... ATGTCATCGTTGCAGTTTTTGATAGCGGTCGTCCA 39333 37 94.6 36 ........A.....G...................... TCCTTCTGTTTTGCCTGAACTGCTGACAGCAGATTT 39406 37 94.6 36 ........A.....G...................... GGTAGTGATATCGTAAGCGGCGGCTATACAGGAAGC 39479 37 94.6 36 ........A.....G...................... TTCTATTTTTCCCCTGCTACTTACCAAAAACTTTTA 39552 37 94.6 37 ........A.....G...................... CGTGAAATCTATAAAGATATTCCTACTATCGAAGCTG 39626 37 94.6 40 ........A.....G...................... TTGAAGCTACGATCGCTACTGATGTTGAGGCAGGCACGGT 39703 37 94.6 35 ........A.....G...................... TTAGCGGATTTAGATAAAGGCAAAGTTTAGTTTAG 39775 37 94.6 35 ........A.....G...................... GAAACTGCCAGAACGCTTTGTACGCTTCCTCTTCG 39847 37 94.6 37 ........A.....G...................... ATTAATCTTCAAGATCCAAAGAAAAAGAAGCAAGCCA 39921 37 94.6 35 ........A.....G...................... ATCCTTGCCATCTTCAAGAGATACTAATATGGAAT 39993 37 94.6 34 ........A.....G...................... ATCACATCACATTCATTTGAAAAAGAGTTACCAA 40064 37 94.6 34 ........A.....G...................... AACCCCCTTCTCACCCCGCCGCTTGGGAATTACC 40135 37 94.6 37 ........A.....G...................... CAAACGACTCTCCTGATGACCTTGACATTACTTACGC 40209 37 94.6 34 ........A.....G...................... CTCTTCTCACCAATCAGAGAAGAGATACGGAAGT 40280 37 94.6 35 ........A.....G...................... CACACTATCCGCGTATTGCTTTTGCAGGTCAAAGG 40352 37 94.6 34 ........A.....G...................... ATCCCTGCATCTATTACGATGCTTGAGAGACTGC 40423 37 94.6 37 ........A.....G...................... AAGAACAGATGGTCGCCACACTTGGCGATTTGCGACA 40497 37 94.6 35 ........A.....G...................... CAACCCCCCACTTGACATAATCCGAAAATTTCAAC 40569 37 94.6 36 ........A.....G...................... GATACATCAGGAAGCTTGGTATCAAGTGGGGAACCA 40642 37 94.6 36 ........A.....G...................... GCCTTCGGTACAGGTAAAGCCACATTTGCACCGATA 40715 37 94.6 36 ........A.....G...................... TTTGCCTTCGATGAAGATGAAGCCTTGAGGCTAATT 40788 37 94.6 35 ........A.....G...................... CAAAATCAAATCTTCATTTTCGGAAATCCAACTTT 40860 37 94.6 35 ........A.....G...................... TGAGCCTCAGAACATATTCGGGAGAACTGCCTGCT 40932 37 94.6 36 ........A.....G...................... TTATTATGTCGAAATTCGTGGTGTCTATCTTGATAG 41005 37 83.8 0 ........A.....G..............G....CTG | AC,T,C [41031,41034,41040] ========== ====== ====== ====== ===================================== ========================================== ================== 75 37 98.0 36 GCTTCAAAGCCTCTAAAACCCTTTTAGGGATTGAAAC # Left flank : CGTACCAAAATCCATAAGATTCTCAAGTCCTATGGTCAATGGATGCAGTTTAGTGTGTTTGAGTGCGAACTGACTGATGCTCAATATGCCAAATTGCGATCGCGTTTGAGCAAGTTGATTAAGCCGAGTGAGGATAGTATTCGCTTTTACTTCCTTTGTGGTTGCTGTCAGCCTAAAATAGAGCGTATTGGCGGCGAACAGGTGCGCGACGACACAATTTTTTTCGCTTGATTTTTGGTTCACGGTTTGCGCGAGTTGTTGGGTGTTTTTGAAGACTGTATGCAGTTGTTAGTAATAAATGTGTTGTTTGGTATGACTTTGCAGGCGATCGCACGAATTGTTTGGTTCGCGCAAGTCCTGAGTGCTTTGCTATATCTAGGTTTTCAATGTTCACGACAAGATCTAAATTCGCTCCAATCAGCCCAAATCTGCTACAATTGCGATCGTTCGCGCAATTGTACCTTGACAATCAAATATAGTATACTTCTTAAGCGCGGGTT # Right flank : GAGTAGACAAAAGCAAAAGAAAAGCTAAGATTAGGTTTGAAGCAAAAAGGTCTCAGCAATATGGAGAATATCGTATCGCACTTGGATATCACGCAAATATTTTGTGAAGTGGATGATTTTTGCCAAAACTTTGAAAAACACTGGCAAGAGCAACCGATGTTGCTGTCAATGATAGGAGAAAGGAAAAGTCGGTCAAGAATGAGACTTATTGAGGTTTTCAGATAAGTACAGTACGAGCTTCAGTCTCAAGGAAATAGCCAAGAAGGTCTTTTTGCTGAAGAGAAGCAATGAAAGTAGAAACAGCAGCATCTAAATCTTTTCTAGTTTTAGGCTTTAGTTTGCGTAAAAAAGCCTTTAATTTTGACCAAAGCATTTCAATGGGATTTAACTCAGGAGAATAGGTAGGTAAAAACAAGACCTTCGCACTAACCAACTCAATTGCCTCTATAACTGATTGATTAGTGTGAACATTGAGGTTGTCCATGACGACAACAGCCCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAAGCCTCTAAAACCCTTTTAGGGATTGAAAC # Alternate repeat : GCTTCAAAACCTCTGAAACCCTTTTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 2668783-2670061 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017560.1 Pseudanabaena sp. ABRG5-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2668783 37 100.0 35 ..................................... GTGCTAACTCAATCACCAGAGGTTAAGGCTATTGG 2668855 37 100.0 37 ..................................... GCGCAAAATTGAACCCTAAGATAAATATTGATTCTTT 2668929 37 100.0 34 ..................................... CTTTCCGAACCACTTAGAGAGATAGACTGGCTTC 2669000 37 100.0 41 ..................................... TTTGCACTCGACCTAACGCCCAAAGCGTTGCTACTCAACGA 2669078 37 100.0 40 ..................................... TTGGACAAAGTTCCTGCGGGAGAAAGACTATGCAATCGAG 2669155 37 100.0 34 ..................................... CCGATAAATGCAGGATTTGCTTGTGATTCCCCCG 2669226 37 100.0 34 ..................................... TAGGCTTGATAATGCGGTCGTAGGCAAGCCATGC 2669297 37 97.3 37 ....................A................ GTAACTGCGGTAGTAATAAGCCTCAAATTCAATCGTA 2669371 37 100.0 35 ..................................... ATAGATTATGAGCAACTACAACGTTACAGCAAAAT 2669443 37 100.0 35 ..................................... ACTTTTATCGATGCGAACTAACCAAGGTCTACCAG 2669515 37 97.3 34 ............T........................ AACTCCATCCAATCCAAAGTTATAGAAAAATCCA 2669586 37 97.3 39 ............T........................ AACGTAGAACCTTTCGCAATGAAAATGGCTGACTTTAAG 2669662 37 100.0 35 ..................................... TTTCTTCGGGGACTTTTGATTCCCCCCTAATAGGA 2669734 37 100.0 36 ..................................... CTGAAGGAGCGCAAAGGATTAGTAACTCTCAAAGAT 2669807 37 100.0 34 ..................................... CCAAAGAGCAGTTCTCCAGCCCCTTAAGCTCCAA 2669878 37 100.0 38 ..................................... TTGCACTATCAAGCCATCAAAGACCTTGCAACACTTCA 2669953 37 100.0 35 ..................................... TAAGCTTCGCGATCGCGAAATTGAGTTATGGAATG 2670025 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 99.5 36 ACTTCAAAACCTCCAAACCCCTTTTAGGGATTGAAAC # Left flank : GTGATGTAGAGGCTCATAGCCCATAGGAACACGATGATGCTCAGGCACTGCTGGTCAAATATATCATTCACCAGTATAGCGATTACCCCAAATCTCGAATGATCTGTCGCTAATTTTTGGGGTGAGATTGAGGAAGCATGGCATGAACAGCTTTCTAGCAGCTTCTAGCTGTAGAGCTTTCTGTTGTCGCTAATTTTTGGGGTGAGATTGAGGAAGCATGGCATGGTATGACGATGGTTGATGGTGTGCGCGAGTGATTGGGTGTTTTTGGAAATAGGATGTGGTTAGGGGCTTTGTAGGTGTTGGCTAATATAACTTTAGGTGCGATCGCGTTTTCTTCTCGGTTCGCGCAGGTCTGGCAATGGGTTGATAAATATGAGTTTGTTCTGCTGCTTTAGGGAAATATATCTGCTTTCAAATTTGCAAATCTGCTATGATTTGTATGCTCCGCGCAAATGCACCTTGAAAACTAAATACAATCAGCCAAGTAAGTATGGGCG # Right flank : CGATTGTGGAAGTATATCCTAAAGGGGAAATTCTTCCACAATCTATCCTATATTTGCTATCCACAATAGACATAAACACCCAAGCAAATGCTATTGCTAAAAGGCGAATCTGTAGATTACGTTGAGAGAGATAAAAGTCTTAGACTATACATTTAGGAAACGGACTAACGCTTCAGCCTTATCCCATGCCGCACCACTTTGGAGGATTTGTGAAGCGAGTTGGACACCTTCTGCCCAAGTATTAGCCGCACCACCAATGCGGAGAGCTAAACCACTATTGAGAGCCACACAATCCGCTTGAGCGCGATCGCCTTTTCCTTGCAACACTAAACGTAAAATATCCGCATTCTCTTGGATATTACCACCCTTGAGACTAGCTAATGGCGCAGGAGTCAATCCTAATTCTTGAGGGTTAATCGCCTCCTCCGTCACCTGACCATTACTCAAAAACGAAATATCCGTAAGATCGCCTAACCCTGCTTCATCCAGACCTTCACGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTCAAAACCTCCAAACCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA //