Array 1 396-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTK01000063.1 Streptococcus thermophilus 1F8CT contig63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 395 36 100.0 31 .................................... AATCTGGCGCTGATTTAGTGGTAAATGGTAA 328 36 100.0 30 .................................... AAGACCGCTGTACTGGTCGGTATTCGTACC 262 36 97.2 30 A................................... CAAATTTCAATCGTTGGGTCTCTACTTATC 196 36 100.0 30 .................................... TCTAGTTAATGACTTACAAGAGTATCTATT 130 36 100.0 30 .................................... CTTTAAAATATCTAAAAGATAACAACATCA 64 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GCTTCAGGAACTTTGAAAACTTTAAGAAACGGATTTTGATGGCAGTAAATATTAAAAAAGAGAAGACCAAACTGGTCCTCTCAAGAATTTAGCTTTTCATCTACCCACTACAGTTGACAAAGAGCCAAAAAAGTTTGGCTTTTTAT # Right flank : CTTTATACTTTATCTTTTTAAAAAATGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 610993-612941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003138.1 Streptococcus thermophilus 1F8CT chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 610993 36 100.0 30 .................................... ACACCATTGAAGGGACTTCTCAACACTTTG 611059 36 100.0 30 .................................... ATTACACTTGGAGTCTCATTCGAGGTAACG 611125 36 100.0 30 .................................... TTTCCAAGGTTTGCGTTAGATGCGTTAAAT 611191 36 100.0 29 .................................... CAATAAAGATAAGAAGCACGAGAGAACAA 611256 36 100.0 30 .................................... CAAGACATGTTGTCAATCGTTAACACTTTC 611322 36 100.0 30 .................................... ACGTCTGCCTTATTAATCCATGAGTTTATA 611388 36 100.0 30 .................................... GTTGATGAGAAAACAGCAGATGAAACTTTT 611454 36 100.0 30 .................................... GTAAACAAAATGAAAATAAATGACGACATC 611520 36 100.0 30 .................................... AATCATGGCAAGAGCATTGCTTATGGCTGA 611586 36 100.0 30 .................................... TAACTAACGATATCAAAACACAAATAGACA 611652 36 100.0 30 .................................... GGGTCAAGATAGAAGATAGCGTTCTCTATA 611718 36 100.0 30 .................................... ATTTGCGAGAATGTATTCCCCATATCAGAG 611784 36 100.0 30 .................................... TTGCAAGTGAAAAAAGAAATTTCAGAAGCC 611850 36 100.0 31 .................................... GAACTAGCAAAGAAAAAAGGACGATACACTG 611917 36 100.0 30 .................................... CAAGCCCATAAAAAGCGTTTAGAGGCATTA 611983 36 100.0 30 .................................... CTATCATGTTTTTTATGTATCAAAACTCGT 612049 36 100.0 30 .................................... GAACCGTTGATTTGTCTATGAAAGACGACA 612115 36 100.0 30 .................................... CTTTAAAATATCTAAAAGATAACAACATCA 612181 36 100.0 30 .................................... TTTATACTTTATCTTTTTAAAAAATGTATT 612247 36 100.0 30 .................................... TATCAACTGCGTTATCTGGAGACAGCAAGC 612313 36 100.0 30 .................................... CGTGTCGCAAGTCCATTTCTTTCAGAAGGC 612379 36 100.0 30 .................................... CTATTAAAAGAAGCACTAGAAGTCATCTAT 612445 36 100.0 29 .................................... CTAATATCGCTGGTTATTTCAATGCCTTG 612510 36 100.0 30 .................................... TATCACTTGATGAAATCGTTTCATATCCAT 612576 36 100.0 30 .................................... ATCCCAGAAGATGGAAGAACTATTATCGAA 612642 36 100.0 30 .................................... CTTGCATCTGACATCCCAGAATCGACCAAA 612708 36 100.0 30 .................................... AGAAATAGACTGCTATGTTATAACAGGTGC 612774 36 100.0 30 .................................... TCTATGGTTCTTAGCCCGCCTGTGACCATT 612840 36 100.0 30 .................................... CAAACAATCCTAGTGATTACTCGTGGACGC 612906 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGATTTATCTCAGAAGCATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGTTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGA # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGTTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGCGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1283850-1283615 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003138.1 Streptococcus thermophilus 1F8CT chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1283849 36 100.0 31 .................................... CAAGTCGCAATCAGGATTGGGAAGCAATTAC 1283782 36 100.0 30 .................................... CGAATCAAAATCAAAAGAATACGATGCCAG 1283716 36 100.0 30 .................................... TATGGCAGATAATCAGAAATACTATTACAT 1283650 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 100.0 31 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGGACATGTTATACGAATATCTAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTCTGATTCAGGTAGAACCTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //