Array 1 14238-14852 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDQL01000004.1 Macrococcus caseolyticus strain ATCC 51835 NODE_4_length_230928_cov_43.145_ID_1099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 14238 37 100.0 35 ..................................... TCCCTGTCTTACTTCTAAAATCATTAATTACAACT 14310 37 100.0 37 ..................................... ATCTAACGTAACGATTAGCTCTATTCCATAACGTCTC 14384 37 97.3 35 G.................................... GTGATGATGTAGCTGATTGTTAGTAGTACAGTTGT 14456 37 100.0 37 ..................................... ATTTCATAAGCGTCGTAATATGTTAAATCTTGAAGTT 14530 37 100.0 35 ..................................... AAGTATAAGTTTTCGAATAGTGCTTTATCGAACTC 14602 37 100.0 34 ..................................... CTAAAGTTAGCAAAGATAATGCTATGATAGATTT 14673 37 100.0 36 ..................................... GTATTTGTCGATCTGATTAATTTGTTAAGTTGTTTG 14746 37 97.3 33 C.................................... GATTATGAAGTCAACACTATTCATGTGAATTTT 14816 37 75.7 0 ...................A..T.G.....TTTT.CT | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 96.7 35 TACTCGAGACCCACCCCGAGAAATAGGGGACGAGAAC # Left flank : TCTCCTGAGGGGATATATTGTTAAATTAAGAAGGTAGGCGATTTATTTATAGCTAGAATAAGAAGAACATTTACACTAGAATTTAGATATGATCTAATTCTGAAACGGTCTTATTTCACTTTTTGATGATCAGCTGATTCATTTATTCTACCTTAAAATGTGGCGGGTTTAAGCGATGTTTTTGTAATAAAAATGTGTGTCTGAAATGAAATAAACTTATAAAGACAACTTTAATTAATTGTGATGATATCAATAATATAAATTTTTAGCATCATATATATAATGTAAAAGTATTTATATTTAATATGACAAAAAATGACGTAAATATTTTGTATAATATTATTAGACAAGTTTATATTATTATTTATTTTTATAAATTTATTATATATGACTTGTCCAAAAATCGGACAAATCATATATAATAAATTGTGAGTATGGTCGATTTTAGATCCTATAAATTGCTTGATAAAACTTGATACATCAATGTTTGTAGGCTTCAC # Right flank : TTAAATCTAATAATGGAGTGATTCGCTTGAAAGATATTGTATATATTGAGAATTCATATAATGTTTCTGTCAGAGAATTCGGATTTAGATTTTATAATTTTATTGATAAGAAAGAATTATTTTTTACATTTGATGATGTAGAAACTTTTATTTTTGATAATCAGAAGTGCTACTTATCAACAAGTTTTATCAACGCATGTATTGATAGAAATATTAATATCATTGTTAAAGACATTAAACATAATCCCGTTGTTGATTTTGTTTCACTGAAATTGCATAGAAATCGTTTATCACGTTTACAATCGCAGATAATGTTATCCCAAAAATCTAAAAATAGAATTTGGAAAAAGATTGTTGTTGCTAAAATAAGAAATCAAGCTAGATGTTTAGAATATTGTACTCAGAATAAGGAGGACAGAGAATTTCTGATGGATTTAGCTAGAAATGTTAATGAGGCTGATAAGGAAAATCGAGAGGCTGTGGCAGCAAGATTTTATTTT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACTCGAGACCCACCCCGAGAAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 23510-24475 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDQL01000004.1 Macrococcus caseolyticus strain ATCC 51835 NODE_4_length_230928_cov_43.145_ID_1099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 23510 36 100.0 35 .................................... TGGATACGTCCGAACTTTACAAGCCCTTCACTGTT 23581 36 100.0 36 .................................... TCTGATTGGATTGTTGTTGTGACACCATGAGTGTTC 23653 36 100.0 35 .................................... AAATCATCTTCGTGTATTTTAACTTTGCTACCGTC 23724 36 100.0 35 .................................... GGATTGTCATTTGTGTGTAGTGTTTTCTTTTTTGC 23795 36 100.0 37 .................................... CTTTAATTTCTTGGAAATAGATAACTAACTTATCAAT 23868 36 100.0 35 .................................... TTATTTTTATGGTTATATATCTTATAACTTGAATC 23939 36 100.0 34 .................................... ACGGTTAGGAGGGAATTGTTATAATATCAATACA 24009 36 100.0 34 .................................... CACTAGCTCGATTAGCGCTTTCAGAATTTCGTCC 24079 36 100.0 34 .................................... CATGATAGTACGATGAAAAGTCCGATTGTTTCTA 24149 36 97.2 38 ..........C......................... TCTCCTAACGTTGAGAAGTTCAAGCGTACATCATTGTT 24223 36 100.0 37 .................................... TCCATAGCTTTCTCAATAGTTTCCATAATTAGTTTTT 24296 36 100.0 35 .................................... TAGAAGTCTGTGATGATCTGATCGATTGTTTTTGT 24367 36 97.2 37 ..........C......................... TTCTCTTGCATTGGTAAAAATACACGCTGAACAGATT 24440 36 88.9 0 ..........C.........G...........A..T | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 98.8 36 ACTCGAGACCTACCCCGAGAAATAGGGGACGAGAAC # Left flank : TAAACCTTCGAAGTATATTAAATTACATGTCAGGACACCGATGGCATTTAAATCTAATGGCAGATATGAAATATTTCCAAGCACTAAAATGATGTATAGAAGTACAATGTTATTGTTCGACGCGTTCTTTGATGAATATCAAATGCATGACCATGAGACACTCAATTATATTCAGGAAAACGTAACGATTATAGACTATAATATGAAGAGTACAAGATTTCACTTAGAAGGTGTGAAAATACCTTCGTTCATTGGGCAGATGACGCTAAAGATTGATGGTGCAAAAACGTTTGTTCAGCTTATAAATTTCTTAACTGAATTCGGATCATTAACCGGTATAGGAATAAAGACGAGTATAGGAATGGGAAAGTATGAAATTATTAATAAATAATTTGTCCGCAAATCGGACAAAGAAGGTGTACAAATATGATGATTGTCCGTTTTGCGGACAGAGAAATCACTAGAAAAACCTTGATGTAACTGGTTTTACCATGCTATCT # Right flank : TTATTAATAAAAAAAACGCAATTTGCCGGAAACGGTAAATTGCGTTTTAATTATTATTAGTTGTTATATAAATTTAATTTCTCTAGATAATCATTCATATCATTGTAGGATTTTTTATTAGATTCAACTAGGTTTTCTTTCTTAAGTTGTTCTTCTTTCATTTCACTAACATATGGAAAATATCTATCTACAAATTGTTCATATGAATTATTAGACTTAATATCTTTGAATAATTCCATCATTTCATTTTTATGTTTATTTACTTCATTTTCAAATTCTTGCTGTGATTTTAAGGCCATATATGTGCTGAATGCCTCGATACCAACAGACAATGCTGCACCACCAAATTTTAAATTTTTTGCAAACTTAATCATCCCCCATGGCTTAAATTTTATAGGAATTCTAGCTGTATCTCTGATAATCTTTATTCCCTTTACTAGTTCTTTATTTGGTACAGCGCCGATACCAGAAGCAATATATTTTCCATAGTTAGAACCTGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCGAGACCTACCCCGAGAAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //