Array 1 1-822 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000131.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1 30 100.0 31 .............................. ACCTGCACGCGCCGTGGCCGAGCTGGCTCGC 62 30 96.7 31 .............................A AGGCCAAGGGGGTTCTCGTGGGTAGCTCACC 123 30 100.0 31 .............................. TGCTGGGCCGCATGCACGACGCCGACCTGCC 184 30 96.7 31 .............................T CGTGGGCCTTGACCTCGCCCTCGCCGGTCTC 245 30 93.3 31 .....................A.......C AGCCGACCTACCAACCACCGACACCACCATC 306 30 100.0 31 .............................. TCCAGCCCTGCGCCGCGTACGTCCACGTGTC 367 30 96.7 31 .............................T CGTGGAGGACGACGACATGACCGAGGCCGAG 428 30 96.7 31 .............................T GCGTCAGGCGGCCATCGCCGCGGGCAAGGAC 489 30 100.0 31 .............................. CCATGACCCGCCGGCCGGCGTCGGTGTGCCG 550 30 100.0 31 .............................. GTGGCTCGACGAACGCCTTACGGCCGGTGAG 611 30 100.0 31 .............................. ACTGGACGGTGAGCCGCACGAGCGGCTCGTC 672 30 93.3 31 ..................A..........A TGTCGTCGACGCGGGAGAACACGTAGCTGTC 733 30 96.7 31 ...........A.................. GGCACGCTGACGTGGTCCATGCCGATGCTGG 794 29 93.3 0 ..A..........................- | ========== ====== ====== ====== ============================== =============================== ================== 14 30 97.4 31 GTGCTCCCCGCGTACGCGGGGGTGGTCCCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 641-123 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000144.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 640 30 93.3 31 ..A..........................A GTGTCTCTTCCAGGAACTGCTCAGCGCGCTC 579 30 100.0 31 .............................. GCCAGACCCACCGCCGCGCCCTTGACCGCCA 518 30 93.3 32 ............................AT GGACGGCCGCGGCCGTCGCCAGTCTTAACTAC 456 30 96.7 31 .............................A GCCGGCACACGGTCGCGGTGCCGGGCTCGCC 395 30 100.0 31 .............................. GAAACTTGATCATTGGCGGTCAGGCCGGTGG 334 30 100.0 30 .............................. CACCACCCATCACCGACGCCGAACGAGCCC 274 30 96.7 31 .............................G GGCAGATCACCATCACCGTGCTGAACAGGGA 213 30 96.7 31 .............................T CGGCCGCGGCCCGGGCGGGCACCCGGGGTCC 152 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ================================ ================== 9 30 97.0 31 GTGCTCCCCGCGTACGCGGGGGTGGTCCCC # Left flank : ACGCGGGGGTGGTCCCGGGCACGCTGACGTGGTCCATGCCGATGCTG # Right flank : CGCTCATGCTCGGTCCACCGCGGGCCCCACTCGTGCTCCCCGCGTACGCGCCTCGTGCGAGGAGCCGACGGGCGGCTGCGGGAACAACGCCCGCCGGCGAGGGCAACGGTACGAGGTCCGACC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 542-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000127.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 541 37 100.0 34 ..................................... TGCACCCGAAGACGTGATGGTGGCCGGACGGATT 470 37 100.0 33 ..................................... TTGGCAAAAGGCCTGTCACGAGCCCTCTCGGCG 400 37 100.0 32 ..................................... GGCGGTTTCTTCCCTCTGTTTGAAATCGAGGT 331 37 100.0 40 ..................................... TCCCACTTGCGGAGGGGTTCCCCCTTACTTACTTACTTTC 254 37 97.3 38 ......................T.............. TTTCTAGCTTATAACCTCCTAGGTCATTTTTTGACGAA 179 37 94.6 36 ..G...................T.............. GAGCCGCTTGTTGCGCTTCCGCCTACTGCGCTCCTG 106 37 86.5 0 ..G...................T..........T.CT | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 96.9 36 GTCCCGAAACGGGTCACGCCAGCAGGCGTTTAGAAAC # Left flank : GCCCTCATCCAAATGTGGGGCAACCGCATCCAACGCAGCGTCTACCTCTGCCACCTCGACCACGACGACCTGACCGATCTCACCGACCGTCTCACCGGCCTCATCGATACCCGCACCGACGCCATCCACATCCTTCCGCTCTGCGGCTCGTGTACCGCGTCAACGACCACTCTCGGCCAGGCCACCACCCCCACCACGGAGCTTTACTGGGCGGTCCTATGACCACATCGCAATCACCCTCCCGGGTGACCCGCCCGCACGCCCCGAACCGGGCTGAGGTGTGCAATGCTGCTGACCAGCAAAAACACCCATCACCCATCCATAAACATCAGCACCCGACAAGATCAACGAGAGCTGGTGTGCAACCCGCCTCTGTTTACGCTGGTCAGAGGCCACGCAAAACCGATAG # Right flank : TCCAGCCGGGGATCGTGATCACGGTTCGATGAGGGCTTGTCGGGCGTAGTGGCTGTTCATGGCTCTGGCT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGAAACGGGTCACGCCAGCAGGCGTTTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 388-69 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000153.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 387 37 100.0 36 ..................................... TCTTGTAGCCCACCCGATAGCAAACTAACCCCAGAA 314 37 100.0 32 ..................................... ATTAAAATTGAGGCGCACAGATCCAAAACCTG 245 37 100.0 34 ..................................... GCACGGATGATGGCCTCCCTCTTCTTCACCACGA 174 37 100.0 32 ..................................... CTTTTTGGTAGTCTTCCTCCGTGATGATGAGG 105 37 91.9 0 .................................CCT. | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 98.4 34 GTGCCAAAGCCAGTCACGCCACCAGGCGTTTAGAGAC # Left flank : ACGACGCCACCGGAACCACCTATATCCACGGCGAGAATGAGTCATAAGCACACCTGACCATCACGCGCAATCACTCCCGCAGGTGACCCATCCGGGCGCCCCGCACTGGGCTCAGGTGTGCAAGGTCGCTGACCAGCACAAACACGCCTCAGCCATCCACGAGAATCAGCGCACGGCAAGATCCGCGAGGCCAGGCGTGCACAAGGCCACCATTCCCGCAGCTCAGACCCCATAGAAAACCGATGG # Right flank : CGATGATTCGCAGTTGATGGCTGCTCGTTCGGCCAGGCCGCTCTGATCGATCGATGTTGATGGGTGTGG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCAAAGCCAGTCACGCCACCAGGCGTTTAGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8569-9107 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000024.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8569 37 100.0 33 ..................................... ACAAAAACGCAATGAGTCCAATCCTAAAGAGGC 8639 37 100.0 37 ..................................... TTCTCCGCATATCATGCAACGTATCGTGAAAGCGTAC 8713 37 100.0 36 ..................................... GGTCATCGTCAGTCCGGTCAGCCGGCCGGGCACCAA 8786 37 100.0 32 ..................................... ACCTCCTCACCTCATCGTCGAGGGAGGTTCGT 8855 37 100.0 30 ..................................... CCGAGGTGGTAGCCGGGGGCGAGGGGGCCG 8922 37 100.0 38 ..................................... CCGGTCAGGAGCCAGGTCAGCATCTCGGCCGCCATCAG 8997 37 97.3 37 ..................................A.. AGGAACATGTAGGCGCTGATCACGATCATCGCGACGC 9071 37 89.2 0 .TG........G......................A.. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 98.3 35 GCACGAAAACCAGTCACGCCACCAGGCGTTTAGAGAC # Left flank : GAACGCCCCGACCACCTACCCGCCACCAGCCACCTCTGGGCCTGGACCACCCACACCTGCTGGCGCGCCCGCATCGACAGCAGCCAAACCCTACTCACCGAACTCACCCTCAACCCCACCGAACCACACCCCGACACCATCGAGGTCCACAGCCAGCCCGGCATCGCCTGGCCCACCGACTACGGACCCATCGGCCCCCAACCACCCGGAGTCCTCACCACCACCTACACCCGCTACACCACCCCGAACCACAACGACGCCACCGGAACCACCTATATCCACGGCGAGAATGAGTCATAAGCACACCTGACCATCACGCGCAATCACTCCTGCGGGTGACCCATCCGGGCGCCCCGCACTGGGCTCAGGTGTGTAAGGTCGCTGACCAGCACAAACACGCCTCAGCCATTCATGAGAATCAGCGCGCGACAAGACCCGCGAAGCCAGGCGTGCACAAGGCCGCCATTTCCGCAGCTCAGACCCCATAGAAAACCGATGGG # Right flank : CCAGGTTCCATCTCGCCTCACCTCGAAGAAATCCCGTAACGCGTCAACAACGCAACGCGGCGGCCTTCCCAAATCCGAAACCCGCCACGTGAAGGCTGGCGACATAGGCATATATCAGTCATTTGACAAGTGCTTATTCTCGTGCAGCTAGACAGTTTTCGACTCCAATAAATCTCTGCGAATGAGCTTTGATACCCTCTTCCTAAACTCTGCGGATTTGGAGAAATTGGCATGGCTGCTGTTGAGCGAACTCTCGTGCTGTTGAAGCCGGACGCGGTCGCCCGAGGGCTCGCGGGTCGGGTGCTTCAGCGGTTCGAGGACGCCGGCCTGAAGATCGTGGGTACGAAGATGGTGCGGATGGACGCCGAGCTGGCGGCCAAGCACTACTTCGACCTGGAGGAGCGGTTCGGCAAGTCGGTCTTCGACGTGACCGCGACGTTCATGCAGTCCGGCCCGGTCATCGCCCTGGTCCTGGAGGGCGTCGAGGCCGTCACCAACGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACGAAAACCAGTCACGCCACCAGGCGTTTAGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 53938-53786 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000037.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53937 29 89.7 32 .C..A.......................C CGAGGCGCCCACCGCAGGCGAACCCGCCGAGA A [53934] 53875 29 100.0 32 ............................. GCTGACTACGGACCTCACGTGCTGCCCCATCG 53814 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTCGTCCCCGCACGCGCGGGGGTCTTCCT # Left flank : CCCCACCAGCGAAGCTGATCGAACTGACCACCATGCGACAAACACCAATCATCGAACGACTCACCACCCGCCGAAAAACCCCACACAGCCACACCTAAGGCCCGGGCCGCTGAGGCTCGCGTCAACCCGAGTGCGCGCAGCGGAGAATCCAACGGCGCATCGGACGACCCCCGCACGTGCGGAGCCGACGACAACCGGCGCACGCCGACCGCATTCGCGGA # Right flank : TGTCGATGTGGGGTCTCAGAACATGCTTGACGGTTCGTTATCGGGAGATGCTTGACGGGCGCGCCTGACTGTTGATCTTCTTCTCGGCGTCCATTTCAGGGAGTCGAGGCGGTCGTGGATCAGCAGGCATTGGTGGAGTACCGGTATCAGGCGGTGCGTGAAGTGCTGGCCGGGTCACCGATCACGCAGGTCGCCGCCCAGTACGGGACGTCGCGGCAGTCGCTGCATACGTGGCGGTCTCGGTTCGAGGCAGAGGGCAAAGGCCGGGCTGGAGGATCGGTCCCGGCGTCCGCGGACCAGTCCCAGACGGCTGCTGCTGTCGGCGTACGGCTATGAGTGCAGAGCTGCGTACGGGTGAACGTGCAGAGGTGAGCACGGTTTGTGCGTCGTACGCGAGGTGCTGGGCGTGACGCTGCTCGGGTCGTTGTCGGGCAGAGGTTGGGCGGCTGGCGATGGGGGCTCTGGATGAGCAGCGGTGGCTGGATGTGCGCCGGTTCCGG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 15072-15649 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000050.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15072 30 93.3 31 ............................CC GGTATTTGCGCCACAGTTTCTTCGCGGTTTC 15133 30 96.7 31 .............................A TGGAGCCAATAGTGTCTCCACTTTGGACAAA 15194 30 93.3 31 ............................CC AGCCCTCGCCGGCCCCAGCCCTTGCCGGCCC 15255 30 100.0 31 .............................. TGATGTAGGAGTTGTCGTCGTCGGCGATGGC 15316 30 100.0 31 .............................. CCATCGAGCTGGAGTTGCGGGCCTACCAGTC 15377 30 93.3 31 ........T....................A GGCGTACGTTTCGATCGGCATCTGCCTCCAA 15438 30 100.0 31 .............................. CCGGCTACACGTTCTTCAGCGGCCTTCAGCG 15499 30 86.7 31 ..........G...T....T.........A AGTCCGCCAAGAACGTGGCCGTGGTCATGTC 15560 29 86.7 31 .....G........T..-...........C CCGGCGCGACTGCCGGGCCCGGAACCCCGCC 15620 30 80.0 0 ..............T.....C.C..GG..C | ========== ====== ====== ====== ============================== =============================== ================== 10 30 93.0 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : AGGACGCCGTCAGCGCGGTCATCCGCGAGGCACACGAAGAGATCGGCGTGCAACTCGACCCGAGCGAACCGCGCCTGGCGGCCACCATGCACCACCGCAACACCGCCGGGCACGCCCGCATCGGGCTGGCCTTCACCGTGGCGTACGACCCCGCGCGCCACCAGGAACCGATCAACGCCGAACCACACAAATGCGCCAAGATCGAATGGTTCCCGGCTGACATGCCACCATCGAACACCTACCCCTACACGGCCGCGTGCCTCCGGGCGTTCCGCGAAGGCCAGCCGTTCGCGCTGAGCGGGTGGCGCTGACTCCAGTTCGCTGAATCCGACATCCGGGGACCACTCGATTGGTCCCGTCCGTGGGTGGCGCGTTGTACGGCCGGGCCTCAGACTGTCTAAGAAGCATGGACACCAGAAGTGAGATCGCACTTCCACACCGACAGCCCCCGGCAGCACAAAAACGAGAACTTGCCGTCGTAAAACCGCAGGTCGCGAAGT # Right flank : CACGCTGGCAGTGACCACGGCGTTGCCGTCCAGCCGGGTATTCACCACGGTGTCGGTGACCGGGTAGGCGGCCAGGAACGACATGCTTGTATCGGTGACGGTGACGCTGGACGAGGTGTCCTGCGCGTCGCGGACGGTGTCGGCGTGTTTGAGCCGGTAGAGGTAGCGGGCATTGCCGGCGCCGGTGGGCGGGAAGCCGTGGGGGTAGACCGCGGTGGTGACCTGCACGGTCGGGGCGGCCCGCTTCTGACCCCATCGGCAGTCCACTGTGAACAGGCCGAGTGCTGGCGGACACGACCAGGGACGGTGGCGCGGTGGGATCGCCGTTGTCGTCACATCCGCGGATCAGCATGCCGGCCGTCGGCAGCACCAACACCGCAATGTGCCGCCCCTCGCCGCATCCGTTGAGATAACCGGATGTATGTGCACAGTGGGAACACCGTCCGCACTGGAGATCAAGGCCATCGGACGGCTCGCCGACGCCGGGTGGCAGGTAGCCG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37527-37987 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000050.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence050, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 37527 37 97.3 36 ..................................G.. TGGACGCTTGTACTATCCACAAGTGCCCACTCGTAA 37600 37 94.6 30 ...C......C.......................... TTAGCAGCCGCCGGAACCTTAGCTATTTTG 37667 37 97.3 35 ...........................T......... AGATCGCTCTATTCATGAGCGACATCTCAGCTTTC 37739 37 100.0 35 ..................................... ACCAGGCCAGAGGGGCACACTCTGCAACACTTGCA A [37748] 37812 37 100.0 32 ..................................... ATGGAGTTGTCGGGCATCGCCCCGGCCAAGTC 37881 37 100.0 33 ..................................... CTCAAGACAATGAGCTGGCTCGTCTCGGCAATC 37951 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 98.5 34 GTTTCTAAACGCCTGCTGGCGTGACCCGTTTCGGCAC # Left flank : CAGCGCTTGCCGCGACTTCGCGTGGTTTTCGCTGAGTAAAGCGGGGGTGGATCGGAACTGCCAAGCCGCTTCGAGGCGCCAGCTGCAGCACTCCTGGGACCTGCTCACGGAAAGTCCGCCGGCATCCGACCGTCGGGCAGACCAGCCGCCACACCTACCTGAACCACGACCTGCACTCCGCCGCGCGTCGACGGGCACCTCGCTCACCGTGCGCTCGTGAAGATCATGCACCCGTGCCGTCAACACTCCGCAATCAGGGCACGCCACCGCCGCCCCAACGGTGTAGACGCTCGCACCACGATACTGCCGCCGGCGTCCTTGACCTTCTCCTTCACCAGCGGAGCCGGCCGAATACCACACAAACAAGATCATCAGCAGCGACCCCTGATTTCTGTCCAACATGGACAGCAATGCGCTCCATTACCACCGAAAGGGCGCCAGAGCCGATCTTGATACGGACCTCCCACCGCCCAGCGGAGCCCGTTCACGCTGGTCTGCGA # Right flank : CCTATCGGTTTCGCGTGGCCTCTGACCAGCGGAAACAGAGGCGGGTTGCACACCGGTTCTCGTTGATCTTGCCGGGTGCTGATATTCATGGATGGATGGTGGGTGTTTTCGCTGGTCAGCAGCATTGCACACCTCAGCCCGGTTCGGGGCGTGCGGGCGGGTCACCCGGGAGGGTGATTGCGGGGTGGTCATAGGACGGCCCAGTAAAGCTCGGTGGTGGGGGTGGTGGCCTGGCCGAGAGTGGTGGTTGCGGCGGTGCAGGGGCCGCAGAGCGGAAGGATGTGGATGGCGTCGGTGCGGGTGTCGATGAGGCCGGTGAGACGGTGGGTGAGCTCGGTCAGGTCGTCGTGGTCGAGGTGGCAGAGGTAGACGCTGCGTTGGATGCGGTTGCCCCACATTTGGATGAGGGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAACGCCTGCTGGCGTGACCCGTTTCGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 8277-9378 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000067.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 8277 30 100.0 37 .............................. CCGCACCCGAGCTGCCGGTCTGCGTGTACCGGTCCTG 8344 30 100.0 37 .............................. TCGTCCATCACGCTCATCGCGTTTCTCCTCTCATCAA 8411 30 100.0 37 .............................. GGCAGGGGCAGTTCGGTGCCGTCGGGCAGCAGCGCGG 8478 30 100.0 36 .............................. CCGCCACGTCCAGGGCGACGACGGCGACGACCAGGA 8544 30 100.0 34 .............................. TGTGACACGTTGCTGGTTGCTGGCCGGCCGCCGG 8608 30 100.0 34 .............................. GCGTTGACTCGGGTGCGGTGGGTCTCGAACGCGG 8672 30 100.0 38 .............................. ATCTTGTACGCGGTGCCGCCGGCCGCGCCCGAGCTCAA 8740 30 100.0 38 .............................. GTGTACAGCGGCACCGACATGCCCTGAGCCCTCGCCTG 8808 30 100.0 36 .............................. GCGTGCAACCGGGATGGCACGGGATCATCACCCGCG 8874 30 100.0 36 .............................. CGGAGCCCATGCCTTTGAGGCGTTTGGCGAGGGTGA 8940 30 100.0 41 .............................. ACCTGATCCGCGCCACCGACACCGTCCGCGAGGCCGCCCGG 9011 30 100.0 37 .............................. ATGGCCCGCTGGCGCTGCCGGGCCTCGTCGCCCTGTG 9078 30 100.0 38 .............................. ACTCAAAAGCGGCGGCTCACATCCGCCCGCAGCGCCGG 9146 30 100.0 40 .............................. ACGTGATCGGGCACCCGCGCGACGACGACCCCGCCTGGTG 9216 29 96.7 35 ..............-............... AAGTTCGACAGATGCCACTGCTCGGCGACCGTCTG 9280 30 96.7 39 ......................C....... GGGTGGGCGCTGTTGGTCACGGTGAGGGTGGGTGTGCAG 9349 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 17 30 99.6 37 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : TGGTCCACCGAGTGGCTCATCCGCGTCCGGCTCGACGCCGGCACCGCCATCGGCGCCGTCCTGCACTTGGCCGAACCCACCACCGGCCATCCCGACCTTCACACCGTGCAATGGACCTTGCACCACACCCGCAGCTGGCCGGACGCCGAAAACCGGGTCGGCCCGCTCAGCCCCGACGTCACCGACCGGACAGTCGAGCTGTACAACATCCACCCTTACCTGTCCGAAGTCCCAACGGCCGCCATCGCGGCGCAGCCGATCTCGTTCGTTCGTGTCCACCCAAAACGATGATCGCAAACGTGATCTTTTGGGATGCGAGCTACGACGGCGCGGGGATACCCCCAAGTCGCGCCAGCTCATAACGGTAGCCGCGCTCGGCACCCAAGGCAGTCCCCTAGACCAACGCTCTGACCTGCAAAGATGCATTACCGGCGAACCGCTGCAAGATCCGAATCTGGACGCATGGTCAAGAATGCTTTGACCTGGGACTTAAGACTCGG # Right flank : CGTGATCCGAGTGCGGCGGTCGGCGGAAACGGTTCGTAGGTGCTGGTCGCGCTGTCGAATGTGAACGCGGTCCATTTGTTCTTCTCTGGGGAGGCGAGGCGAGCGCCGAGAGCGACCGCGATGGCCACCGGTCCGCTGAGGAATATGGCGTGGTGCCCCGTCCGGGCGGAGGCGGGCAGCGCAGCGGCACGCCAGGCTTGGCAGGTCTGCTCCACGACGCCGGTGAACGTCTCGCTGTTCTCGGTCAGACAAGCCGTTGTCGTGCGCAGCCTCAGCATGTAGCCGATCCTGTGCTGGCGGCACGCTGCCAGCACCTGGTCGCAGAACTGGTCTCCGAATCCCTGTAGGTCCAGTGCAAGCGCGACCTTGGATTGATCCCCGCCGTCGACTACCTCTAAGCGCTCCAGGATCAACGGCTCAGCAGTCGATTCCATCGCGCGTAGGGACGTCGCGGGAAAGTACGGCGGGGATCCGTCGGCCTGGCGGATGGCGTGCACCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 19136-20359 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000067.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 19136 30 100.0 38 .............................. GTGGGGTAGCTGCTCATGACGCCTCCTCGCGGGCGAAG 19204 30 100.0 35 .............................. CGCTGAACTTTGGCAATGTGCTCGGGGCTGGTCCA 19269 30 100.0 38 .............................. GGGAACGCTTTGTGGAGGCGTCGGCGGATGCGGGCGTG 19337 30 100.0 34 .............................. TGGGACTTGGGCGCTGAGCACGGTGTCCGCGGTG 19401 30 100.0 34 .............................. ACCGGGTCCGCGCCGCGAAGGCCGCCGCCCGCGT 19465 30 100.0 34 .............................. AACATCCACAGCAGCAGATCCCGCGCGTCCTCGG 19529 30 100.0 35 .............................. GGTTGCGCCCAGTCGGGTGCGGCGTGGAACTCGCG 19594 30 100.0 40 .............................. ACCAGCTCGGGCAGCAGCGAGTACTCGACGTCGAGTAGCT 19664 30 100.0 35 .............................. GCTGCACCCGGGGAATGGCTTGGACCCTCATCGAG 19729 30 100.0 37 .............................. AGGCGAACCGTGCGGCACCACCACCCCCGGCACCCGG 19796 30 100.0 37 .............................. GCGTAGTGCTCCACGCTGTCCAGTGGCCAGCTCATCG 19863 30 100.0 38 .............................. GCGTGCTGCTCGGACCCGGTGGCGGTGTCCACCCCCGG 19931 30 100.0 37 .............................. ACGGTGGAGTGCTCGACGCCGGTGGAGAGGTTGTCGA 19998 29 96.7 38 ...........-.................. CGCAGCAGGATCCGGTCCCCGACGTCGGCGACTTCGAC 20065 30 93.3 37 .....C.................C...... CTGGTCACGGCGAACGACACGTCGGCGAAGTGGTTCA 20132 30 96.7 34 .......................C...... GCCGTCAGCCGTCGGCCTTGCGCCCGTTGCACGA 20196 30 96.7 37 ...............C.............. ACTGTGATGGAGGTGGTGGGGTTGAAGATGAGGTCGG G [20214] 20264 29 93.3 37 .....................-..T..... GTGGGTGCATTGTTGGAACGCGAAGCGATGGCGCCGG 20330 30 73.3 0 AC.....G...T.G......A..CT..... | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 97.4 36 GTCGCTCATCACCCCTGGAGGGATCGCAAC # Left flank : CGCGACGAACTCGCCACCACCGTCTACCACCGCGCGCTGCGCCGGAAAGTCTCGTACGAGGAACTCATCCACCTGGAGGCCTTGAAAATCGTCCGGCTCTGCCTCGAACGAACCCCCTACAAGCCGTTCCGGCCCTGGTGGTGAACCATGTTCGTGATCCTCGTCTACGACACGGCAGTGGAACGCAACCCCGTCGTACTACGAACCTGCCGGCAGTACCTGCACTGGGTCCAGCGCAGCGTGTTCCAGGGCGAGCTGTCCGTAGCGCAGTACCGCGCACTGGTAAAAACACTGCAAGGCTGCCTGGACCTCAGCTACGACAGCATCCGCATCTACCGCATCGGCACACCCCACCTCATGCAGGTGGACTCGCTCGGCGCCGAACTCGGACATCCCGATTCAGTGCTCTGACCTGCGAAGATGCACTACCGGCGGAATGCTGCAAAATCGAGTCCGAACACCATGGTCAAGAACGCTCTGACCTGCGACTTAAGACTCGG # Right flank : GCGAACACCTCGGTAGCAGCACGTTGCCGGACTTTGCCTCGCATCGCACCGTCGGCGGCTGGCACCTCGCCAGCGGCCTACCCAAACCCACCGAACAGGTCGCCGTCGCCGGCAGCGTCTACCGCCTCCGGTGCAGCAGCCCCCCAACGTCGCAAGCGCTCGCCGCCCTCGCCCACCAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2186-571 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000078.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2185 30 96.7 31 .............................T CCACCGCCACGGCGGCGAGCCGGTCTGCCCG 2124 30 96.7 31 .............................T GCGGGTCCAGCACGACGAGATCCGGGCACGG 2063 30 96.7 31 .............................T CCACCAGGTCGACACGGCCGGGGTTGCGCAT 2002 30 100.0 31 .............................. AGTTGGGGATGCGCTGGCTGCAAACCTCGAC 1941 30 96.7 31 .............................C GACGCCGGCGCCGGATCGTGGAACGCGCGGC 1880 30 96.7 31 .............................T GGAAGTCGTTTTTGCTGGGCGCGGCAGTCGG 1819 30 96.7 31 .............................C AACGCGTCGATGACTCGGCCGCGCTGAAGAA 1758 30 96.7 31 .............................C GGATCGTGGACCCACCCGCGGTGGCGACGAA 1697 30 96.7 31 .............................G CCTCCACCACCGCCGGGCGGGACAGATCCCG 1636 30 100.0 31 .............................. GAACGGATCACCTATTAGCGATGACTCTTGA 1575 30 100.0 31 .............................. GCTTCGATTGCTCAGGGCTTGTGGTCTATGC 1514 30 96.7 31 .............................C TCGCGCCGTCGAGCCTGGCGTGCCGCAGATC 1453 30 96.7 31 .............................G AGGCGGCCGCGCGGGCGAGCGCCCGCGCGGC 1392 30 96.7 31 .............................G GCAGAAGCCCGACACCGCGAATGGTGTCGGG 1331 30 96.7 31 .............................T GGATCAACAACGCGGGCACGTTGGCCCCGGT 1270 30 96.7 31 .............................G GCACGGCGCCGAGCCTGCGCGGCCTGCTGAA 1209 30 100.0 31 .............................. CGAGCTGGCGGGCTTGAATGCACGCGAAGAC 1148 30 96.7 31 .............................T GGGTGCCGCACAGCCGGTAGTCGGGCCGTAG 1087 30 100.0 31 .............................. GCCGTTCCGCGGGCGCGGAGTGGTCGAACCC 1026 30 96.7 31 .............................C TGCGCGAGGCGGGCCGTCAGATCGCCGAACA 965 30 96.7 31 .............................T GGTGTCCAATGGGGACGTCCCCGATCAGGAC 904 30 100.0 31 .............................. CCCGGCCCGGCAGATCCGGATCATCCTGCGA 843 30 100.0 31 .............................. CCGTCGAACCCTCACCGTGGTTGTGGTCGTC 782 30 96.7 31 .............................T GAAAGCCGCTGGGGCGCTGCCGGTAGCCGGC 721 30 96.7 30 ............................G. GAACGCGGGGATTGCCGGGGTGATCGTGTC 661 30 100.0 31 .............................. CGATTCGGGCCTAGCCCGTCCGTCCTGGATT 600 30 90.0 0 ..................T.........TC | ========== ====== ====== ====== ============================== =============================== ================== 27 30 97.4 31 GTGCTCCCCGCGTACGCGGGGATGGTCCCA # Left flank : GAACGAGGACGGCACCGAAGTCCCCGCCGGCCTCAACCACGCCTACGAGGTCGACTTCTGATGACCGTCATCATCCTGACCGCCTGCCCGCAAGGACTCCGCGGACACCTCACCCAATGGCTTCTCGAAATCGCCGCCGGCGTCTACGTCGGCCACATCAACCCCCGCATGCGACTACGACTGTGGGCCCGCGTCAACGAACTCGCCGGTCCCGGGCGAGCGCTCCTTGTCTACCAACGACCCGGAGAACAACGACTCAGCTTCGAAGTCCACGACCACACCTGGGAACCCGTCGACTACGACGGACTTACCCTGATCAGACGACCCAGCGAGAAGCGAGTGCACAACCCGGCCGCACCCACAGGTTGGAGCAACGCCAGCAGACGCAGAAAGTTCGCACGCAGAGTCCCGCGGGCACCGGAGGCACCAACCACAGATCGCGGCCAAGGCGAGTGAACAAAATCCGCACTGTTGATCTATAAAGCAGCAGGTCAAGAAGT # Right flank : TCGACCGATACTGCTCGGCTGGTCGCCTGGTTGCTGAGCGACGAAACGGACTGGATCATCGGCCAAACCATTGCCTCGGATGGCGAGTGGTCATCACGATGATCCCGTCCTGTCCTTTGCCATCGAGGTGTGTCCGCTGTGCGAACGCACTTTGTCATTGATGGGCCGAACGGATGACGCCCAGGGCTCCGAAGAGATGAGGGTCCAGAGGATCGTTCCGGGCAAGAACCGAGCATCCAAGTGCGGTCGAAACTCAAGGCGATTTGATCACCGGGCGACCCGATCAATGGAGCCAAAACCCACGAGCCGCTGGTGTCACTAGTCGCGGGCCGAATCATTCCGGCTTTGGTGGACCGGTGATCTGTCGGCAATTGTCGTCCTCGCCCGCGCGTGGTCTTCTAACGCACTACTGGATTCTCCACTTCGGGCGCTCGGGCGCTCGGGCGGACGTGAGCCTGAGTGGCGGCGGGCTTCAGGTGTGGCTGTGTGGGGCTTTTCGG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11777-12843 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000078.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 11777 30 100.0 31 .............................. AGTGGATCTCGCCGGGGTGGTCGAGGCTCGC 11838 30 96.7 31 .............................A TGTAGGCGAACGCCTCGTCGATGATGTTGCA 11899 30 100.0 31 .............................. GCACCCTCGAAGTTTGGCGACCGGCCACCAC 11960 30 93.3 31 ............................GT CGAGCCACGGCATCCAGGGGGCCGTCTTGCC 12021 30 100.0 31 .............................. AGCCGATGGTCAAGAAGACCGAAGACAAGAA 12082 30 96.7 31 .............................A CAACACCCTGCAAACGCGGCGTTGTCGTGTG 12143 30 100.0 31 .............................. GACCGAGCAACGGGCGGAAGCATCATCTCCT 12204 30 96.7 31 .............................A TGAACGGCACCGCGGCCAACGCCGCTTTCTC 12265 30 96.7 31 .............................T GTCGGCGGTGCAGTTCGCGATCCGGGTGGAC 12326 30 96.7 31 .............................A CCATCGTCGCCGAGATGCGGCGGTGATCGAC 12387 30 96.7 31 .............................G CTTCGCCGATGCGCCGCCAATGCGTTTTGAA 12448 30 96.7 31 .............................T TGTCCGCGAGGATGCGGGAGAACCTAATCGC 12509 30 96.7 31 .............................G GCCCCGGCCAGGGCGCGTCGTGGGATGCCGA 12570 30 100.0 31 .............................. ACCACGGGAGACACCATCATGATCCAGAAGT 12631 30 96.7 31 .............................A GGCGGTTCATGCGCCGGGACAGCCCGGAGGG 12692 30 96.7 31 .............................T TCTGCCACTCGTCCAACGGCTGGGCGACGAC 12753 30 100.0 31 .............................. CGTAGCTGGTGGCGCGGGTGAGCGCACAGCC 12814 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 18 30 97.6 31 GTGCTCCCCGCGTACGCGGGGGTGGTCCCC # Left flank : TCCCGATGTCATGCACCCCCGCAACCCACCGGACCAGCCGCCGCCCGTCGTCCGACCCCAACGGCAACTCACAGGCGATCCGGTCACGCACCGACCTCGGCAACCACTCATCCCACAACCGCCCGGCCACATCGGCGCTGTCAGCCATGTGACGCCACAACGGCAACGGCGTCACAAGGTCGCCAGACTTGCCCCACACCACCCGGGCGGCGTCGCTGAGCCCCACCGCGCTGTTCACGCGGCGACCCAAGCAGACAGGTACGACAAGAACCACATGCGCTTCCACTTTCGAGTGACAAAGGCCAGCTCAAAACCATGCCGGGAGCGCCGCCACGTGCGAAATCCCGACCAGCCGGTACATTCGCGATGACACCCCAGAGACGCCAATGTCCAATTTGCGCAGCGCAAACGTCAGAACACGGTGCCTCAGAAGACATGGCAGGAACTAGCGAGTGAACAAAAACCAGACTGTTGATCTTTAGAAGCGCAGGTCAACAAGT # Right flank : ACCTGCACGCGCCGTGGCCGAGCTGGCTCGCGTGCTCCCCGCGTACG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1729-3076 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000072.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1729 36 88.9 36 C.....G............T...A............ GAAGACCACCTCGCAGTGCCGGGACATCAACGTCAA 1801 36 100.0 36 .................................... CTACTCGGGCAGCACGGTGACGGCGCAACTGATCTC 1873 36 100.0 41 .................................... CCGCGCACCGCGTAGGACATCTCGACGACGGCCGCCTTGAC 1950 36 100.0 38 .................................... GCGGTGTAGCCCGGCCCGTCGCGGTAGATCTCCCGCTC 2024 36 100.0 36 .................................... GTTCGCCGCCTGCAGCTCCTTGTCCCGCACCGTCGG 2096 36 97.2 35 ............T....................... CCTTGGCACAAGTTAGCTCTGAGTTGGCCTTGACG 2167 36 97.2 38 .......A............................ CTCCGCGATCCCGCCGACCGGTGTCGGCGCACAGGCCG 2241 36 100.0 38 .................................... TCGAGCTTGGTGGCGTTCTCGGCCGACTGGCCGTCCAC 2315 36 100.0 36 .................................... TCTGCCGTTGAGCACCAGGTCGAGGGCGTCCCGCTG 2387 36 100.0 39 .................................... CGGTCCCGGGGTGTCGCCGGGGCGACGCACCCGGGACCC 2462 36 100.0 36 .................................... GCAGACCAAAGAGCTGATCTCGCCTTACCAGGAGTA 2534 36 100.0 36 .................................... TTCCCGCGCGGCGCGCCAACGTGCCGAGCAGGGACG 2606 36 100.0 37 .................................... TGGCGATCTCGATCCGCAGCAGCTCGGCAGCGTTGCC 2679 36 100.0 35 .................................... AGGCCGCCGCGTGGTGGCAGTCGGGTGGCCGCCCG 2750 36 100.0 36 .................................... CCCCAGCAGCACCGCGGACAGGGCCGTCCACGCCGC 2822 36 100.0 38 .................................... CTGATCCTCGACCTGCATCGACGTGACGCCCGCGCCGA 2896 36 100.0 35 .................................... TTCTCGCCCTCACGGGTCTCGTAGGACCGCTGCTT 2967 36 97.2 38 ...................................C CACCAGCACGCCAGCACCGGACGGGACCGCCAACCCAT 3041 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 19 36 99.0 37 GCCGCTATGGAGCCCGGCCGGGACGGCCGGGAAGAG # Left flank : AACGTGGTCGGGTTTGTGATCGTGGTCCGCGGGATGGTGAGCAGCGATCCCGTTCTTTCCGCGCGGGCTTTGAAGGTCGGCGGCGTGGTCATCGCCGTAGGCGTTGTCCTGCTGTACCTCCTGCGGGCTGCTCTCGTCGACTGACAGACCTCAGGTGGAGGGATGTCATGAGATTCACGGTCGGCCCGGATGGCCGGTGGACTGACGATGGCGGGCTTTCAGGACACGGCCGTGCCGGTGCGGAATTTGAGCGGTCCCGGCGCAGCGCGGCGGTCAGCTCCCAGCAGCTCACGCTTACCAAGCTTGTCGGCTCGTACGAGAAGGCGGCCGAGGGCACGGACCGCATCGGGGGAAACGGTGCCCGGCCGTCGCCATCTTCGCAGGCGGCAACCCGGCCGCGGGCACCATCTTCGCCCGCACCACCATCGGCAAGCTCGCCGACCAAGGCCCCACCCTGCCGAAATCGGTAGAAGCGCCACGACCCGAGGCGTTCTTGGAGG # Right flank : GGCTCGCGAAAATCATGCCTTTTGAGCTGTGGTTTTGCGAGCTTCTGCGAGCGGTGTCACCCAGACCGGCATGTGGGCGCATGGGTGTCGATGGGATAGCCGTCGGCAGGGCCGGTGACCTGTATGCGAGCGCTGCCCCCTTCTTCAGGGGCGTACCGGAGCGCTCGCATCAGCGTCGGGTGAATTTCGGTCGGGCGAGCACGTGTTTGAGACTACCCGCGGCCGGTTCCAGGGTGTCGTCCTCGGCTGCCTTCTGCGCTGCGCTGGAGCCTTCGAGATGATCGCGGTGTCGGCGTTGCGCTCCGGATCGGTCTCTCGCCGGTGCTTCGGTGCCGGATTTGGGCGCTGCGTCGTTGCGGGGCACTGGCCACTGTGGATCACACCGTCGTGTTAGTCCGTATGGGTGGGAGTGCGTGACCGGGTGGACCACTCATTCCGCCTTTCTTGGAGACCCTGGCGTTGATGCGGCTGCCGTTGAGCAGGATCGATCTGTGAGTGTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTATGGAGCCCGGCCGGGACGGCCGGGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.10,-16.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 14451-12516 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000072.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 14450 35 91.4 36 ....A..C...................A....... CGCGTACACGATCATCGCGGCCTGGGACCAAGCCAC T,G [14430,14437] 14377 35 82.9 38 ...............CA..C......A....G..T TCGATCGTGCCACGGACGCCCCCGGTGATGCAGCAGAG A [14354] 14303 34 82.9 36 .....C-..T........T...G........T... GCGAGCCTGAACATTCGGCGGGTGCCCCAGTAACAC T [14285] 14232 35 94.3 38 ............T........T............. GCGGCAGAGGCCGCCCGCGCGCCGCTTGACAACGACCG T [14211] 14158 35 71.4 31 ..................A..GAA.AG.T.GC..T GTGCTGGGCTGCCGTGTTCGTCGTCATGCCC 14092 35 100.0 36 ................................... CGGCGGCCGCCGGTACCGCATCGCCGCCGCGAACCG A [14071] 14020 35 100.0 39 ................................... ATCACCGCACGGCGGCAGGACCTGGCGTTCGCCGCGGCG T [14001] 13945 35 100.0 34 ................................... CCGACCAGCCGCTGCTGATGGAAAGGCGGATCTG T [13926] 13875 35 100.0 38 ................................... GACGACGACGCCACTTCCAGCGCCGCCGCATACTGCGG T [13856] 13801 35 100.0 36 ................................... CCGGCATCAATCGCATCGCCAGCATCGACAACGCCC T [13782] 13729 35 100.0 37 ................................... ATTCCTACTCCGGCGGGTCCGACGCCGCCGGCAACGA T [13710] 13656 35 100.0 39 ................................... CTGTCGCCGCACCCTGGGTCGTGTACGAAGGCCGCGCCC T [13637] 13581 35 100.0 39 ................................... CGAGGGCATCGGCTGGGACCTGTCGTGGGGTTTCCGGCT T [13562] 13506 35 100.0 36 ................................... CCGCGTCGCCGAGCTGCACGGGCAGGGACTGAGCCG T [13487] 13434 35 100.0 39 ................................... CGACGCCGCGATGCGCTACCTCGACACCGCCGCCCATGT T [13415] 13359 35 100.0 37 ................................... CCGACCCCAGGCGGTGCGTCGTGACAAGCCAGCACCT T [13340] 13286 35 100.0 39 ................................... CTGCGGAGATACTCGATAGCATCTACGTATCCGCGGGCA T [13267] 13211 35 100.0 39 ................................... GCCGTCATCACTTCACCCCGCGCCCTCCGGCGCGGTCGT T [13192] 13136 35 100.0 37 ................................... CGGCCGCCGCCCGGCGCAAGTCCCGGCCGATCTGCCA T [13117] 13063 35 100.0 38 ................................... GCCGCCACGTCCGAGTCCGGGCCCACGTCGGTCGGCTG T [13044] 12989 35 100.0 37 ................................... CGCTGCCCAGCGGAAGGGTGGACGCCGTGGCTGAAGC T [12970] 12916 35 100.0 38 ................................... GACAGTCCTACATGGACGTTCGAGTGCACGCTAGTGCA T [12897] 12842 35 100.0 37 ................................... GTCAGTCGCGTTCGTCCAGCGCCCGGCCGCTGCCGGC T [12823] 12769 35 100.0 38 ................................... GTGCGCCGACTCACCCCCGTGCCGATGGCCCGACGTAA T [12750] 12695 35 100.0 35 ................................... TTCCACCACACCCGCGAGTGCGCCGCCGGGGACTC T [12676] 12624 35 100.0 37 ................................... GCATCTTCGCCGAGGCCGGCCCCGAGATGGACATGTC T [12605] 12551 35 100.0 0 ................................... | T [12532] ========== ====== ====== ====== =================================== ======================================= ================== 27 35 97.1 37 GCCGCTATGGAGCCCGGCCGGACGGCCGGGAAGAG # Left flank : ACTGCGAGTAGTCGCTATGAGGTCGCGCCGAGACGATACGGTCCTGGAGATCATGCGACTCCAGTGAATCCAACTGTTGCGAGAGAATTCGAGACGCTAATACGGATTTGACCAAATCTTCCAGCGCCGGGTTTCTGTTACTCGGGCTGAATGATAGCCACACCATAAGAGCACTTATGCGGTGGCCGTCGCCGGTGATGAAGTGCGATGCACAGCCCCCAAAAAGCTGAAATCGATACTTGTCAAAGCTATTGGACTAAGAAAATCACCACTGCGCAAAGTCTACTCGGACAAGCGCTTGCACCGCTATGGAGTCCAGCCGAGAAGAGCAACGGATATCAACGCAGACCATTGACAGCGTGGAGAGCACTACCGCTATGATCCCCGGCTCGGACGGCTGAAGAACCTGCGTCCTTCAGCTCGACGTCTCGAGTTCGTTGCCACGCCTGGAGGGCCAGAAGAGCTGATCCAGGGACGCCCTCATGGTGATAGGTCCACTT # Right flank : GGCTCGCGAAAATCATGCCTTTTGAGCTGCGGTTTTGCGAGCTTCTGCGAGCGGTGTCACCCGGACCGGCATGCGGACGCATGGGTGTCGATGGGTTCGGCATCGGTAGGGCCTGTGACCTGCGTGCGAGTGCTGCCCCTTCTTCTGGGGTATACCGGAGCGCTCGCATCAGATGATCCTTACGCCGTGTGTCGGTAGTGGTCGCCGCTGGCCTACGAATGTGAACCGGGCGGAGTTGACGTCGCCGAGGTCGACGATGACGAGGGAGTCTTCGGTGAGTTTCATTTGGGCTTCGGCTTCGGCGCGGGCATGGATGAGTTCGGTGCGGCTGAGGTCGCAGATGAACAGCGAGTATTGCAGGCGTTCGCCGTAGGATTTCATGACCTTGCAGACTTGCCGGAGCCGTTGAGGTTCGCAGATGTCGTACGCGATCAGGAAGCGTCGGCGGCCCATGGTGTCCTTACCTTGTTGTGAAGGGTGTGTATTCGGGGAGTTCGCCG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTATGGAGCCCGGCCGGACGGCCGGGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.40,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-51] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 16281-16037 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMMX01000072.1 Mangrovihabitans endophyticus strain CGMCC 4.7299 sequence072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================ ================== 16280 38 100.0 30 ...................................... CCGGTGGACCGCTCGGCCTTCCAGACTCCG 16212 38 100.0 31 ...................................... GGTGATCACGAGTGCGTGAGGGTTGCCCTCG 16143 38 97.4 32 ..C................................... GTAGCAGTCCAGTTCGACCAGAACGCCATCCG 16073 37 89.5 0 G..........T...................-...A.. | ========== ====== ====== ====== ====================================== ================================ ================== 4 38 96.7 31 TGTGCCAAAGCCAGTCACGCCACCAGGCGTTTAGAGAC # Left flank : CCCTGCCGGAGAGGCACTTCCGTCTATTTACACGCCGGTCGGACCCACCAGTTGATGATCACCGTGAATCACCCGGGTTAGAGACTGAGAGTCGCCGGCACGTAGAAAAAGTTCGCTT # Right flank : CTTTTTTACCAGCGCGTACATGAAATTGCGGGACTGTGGATCTTTCGAAGGTATGGTAGTTCTCGAACAGATTCGCCGTGGTCGGCACCAGATCCGCCTTGGCGATCTTCACCGCGTTCTCCCAACCACCTTTCGACTGCGGATCCGCCGGGACGCAGGTTCGGATCGTCATCCCGTAATGCCGGGCGACCTGCACGATCTCCGGGTTGCAGACCGCGACGTCGGCGACATGCTCGACCGTGATCGTCTTCTCGTTGTCGGTCAGCACATAGGCGGGCACCCCGCCGAGCCGACGCAGGGTCGCGTCCAGGCAGGCCACCATCGTCGGCAGAGTCTTGTCGAACACCGGGATAACCACCCGGAACCGCGACCAGGCCGGCCATGCGCACCACAACGACCTCCGCCGGCCCCGATGTGTGGAGCCTCGCCCCAGTCGAACTGCATCCACAAGCCCGGCTCCGGAATCCACGGACGAAAGGCGGCCGGCCTGCCACGCCTGC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGCCAAAGCCAGTCACGCCACCAGGCGTTTAGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //