Array 1 57672-53749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGTY02000015.1 Xanthomonas campestris pv. musacearum NCPPB 2251 scf_27880_15.contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 57671 31 100.0 36 ............................... CAGCGGCGGCCGGCGTCAATGCCGAACTTGGATTGC 57604 31 100.0 35 ............................... AGTGCCCTGGAGGTCTACGTACAAGCGAATCTATC 57538 31 100.0 34 ............................... CTTTTCGACCTTGCCGACTTGGAGATGTGGGATA 57473 31 100.0 35 ............................... TATTTCGCTGCTCTGTGCAAGGATCGAATGGACTA 57407 31 100.0 34 ............................... TGGTTCCCTGGGGGATAAGCAACCATACGGCGTT 57342 31 100.0 34 ............................... GCGGTCGCTTCTACAGTGGCGTGGCGATACTGAG 57277 31 100.0 34 ............................... TGCCAGGGCGCGCACACTCTTCCTGTCTAGACGC 57212 31 100.0 35 ............................... CACCACCAATCGACTACACACGCCGACCGGTGCAA 57146 31 100.0 36 ............................... AAGCATGGCGATGTGGTTCGCGACTTCCGCGTGCGG 57079 31 100.0 37 ............................... AAGAACAAAACTGCTGCTCTGGCCGCAGTCGGCTCGA 57011 31 100.0 35 ............................... TGGTTTAAGGAATTCGGACGTAATCGCATAGAAGG 56945 31 100.0 36 ............................... AAGAACAAAACTGCTGCTCTGGCCGCAGTCGGCTCG 56878 31 100.0 34 ............................... ATTGACCCGCCATAGAGTGCAGCCACATCCTCGA 56813 31 100.0 35 ............................... CTGAACCAGTCCTCCGGGATACCTGTGATGCTCTT 56747 31 100.0 35 ............................... ATATCAACGGTGTACGTGATGATAATCGCCTGTGC 56681 31 100.0 34 ............................... ACGGTATCTGGGTATACCGAAAAATAAGCTGCGA 56616 31 100.0 35 ............................... TTCACCTAGGCTCCTACCCCACCGCTGACCTGGCC 56550 31 100.0 35 ............................... GCTCCTCCACAGCCTTAGTTGAGTCATGGCATAGC 56484 31 100.0 34 ............................... CAGTTCTACGCAGAACACGAAACAATGACGACAT 56419 31 100.0 35 ............................... CTTTAGCAGGCGTTCACCACTCTCTTGATCATATG 56353 31 100.0 33 ............................... CTGGTGTGTCTGTCTACCTTGGTAAGAGTTGGC 56289 31 100.0 36 ............................... CTTACTCAGCTGCATGGCTAGTGCACTTCGCTTATT 56222 31 100.0 35 ............................... AACCAACGCAAGTCTTCCGGGGCGTCTGGATCTGC 56156 31 100.0 36 ............................... CTGAAGCCCTGCCAGGTTACGTACCTTCCGAAGGGA 56089 31 100.0 35 ............................... CAGTCCTGAATAATGTCCTCATGCCCAATGAACTG 56023 31 100.0 37 ............................... CCTTGCGTTCGCCTGTCTTTGGGTCTCCCGTCCAGTG 55955 31 100.0 35 ............................... AGATTTTGGCGGTGCATCTGTTGTACTCCCTCTGC 55889 31 100.0 34 ............................... TGGGCATTGGACAACCATCAGCCCCTATGCAAGC 55824 31 100.0 35 ............................... CCACTGTGGCAGGGCCTTGACATAACCGGGGAAGC 55758 31 100.0 36 ............................... AGTACAGGTCACTGCATAGTGCCTACTGCAGTACGG 55691 31 100.0 35 ............................... CAATATGGAGAGTTCCTGATGGACTACCTAGTTGA 55625 31 100.0 34 ............................... TCGCCAGAGAGCCTTACCAGCGAACTTGCCGTGG 55560 31 100.0 35 ............................... AAGGTAAGCACAATGTGGTTGAGCAAGATCTGTCC 55494 31 100.0 34 ............................... TTAGCAAGCATGCCAACGTAGAGGTGGGCCTGAA 55429 31 100.0 34 ............................... TTAGCACCACCAGCAAAGCGGGCTAGCTGATACT 55364 31 100.0 36 ............................... AGGCACTGCACTGTCCCAGCCATTGGGGCCCTTTGA 55297 31 100.0 35 ............................... TGGCGGATTAGCTCCCCCTTAGCTGTATCCACGTA 55231 31 100.0 32 ............................... ACAAAATAAGGAGGCCCTATGGCCGAGCAAAA 55168 31 100.0 35 ............................... TTTGTCGGCTTTTTCAGCAAGGGCAAGCAGGAGAC 55102 31 100.0 34 ............................... GAGCTATGCGTGTTCGAACCAGTGCCAGTACACA 55037 31 100.0 36 ............................... AGCAATGTGGATTCGCAGGCTGGCGGCTCGTTACAG 54970 31 100.0 34 ............................... TGGGAGACTGTCAGACAATAAGCTGGTGCTGACG 54905 31 100.0 35 ............................... TGCAGGATGCACAGAACCACCAAGCATGGATGCAG 54839 31 100.0 35 ............................... CTAAGTGATAGCGAAGAATGCAGGCGGCTGACCTA 54773 31 100.0 37 ............................... GTGTACACATCTGCCGCCCCTAGGTCCGCAGAGGCAA 54705 31 100.0 35 ............................... AAGACTTGGTACTTTGACGAGAGTGCAGAGGGGTG 54639 31 100.0 35 ............................... ACTCTTTTGTACCAGCAGCGCATCATTCTGCGCCA 54573 31 100.0 34 ............................... CTGTGCTGCATGGCGCACGCGAGATTGCAGAGTT 54508 31 100.0 35 ............................... TTTGTCAAACATGGTAGCGGCCTCCGTTGGTGTAG 54442 31 100.0 33 ............................... ACCTTTGCAACCCTTACCAGCATACAGGCCGAT 54378 31 100.0 35 ............................... AGGCGCATCTCGAAGATCTTCACAGTTAATTTCCT 54312 31 100.0 36 ............................... ATCCCCATCCTCGTTTTGTGTGGCCGGTGCGGGCCG 54245 31 96.8 38 .....................C......... GTCTCGCTGGCGACGTTCTGGCTGCTGCTGCCCACCGG 54176 31 100.0 35 ............................... TCCTCCGGAGTCATGGTTGCATCCCCGGCTTGGCG 54110 31 100.0 35 ............................... GTTTCCAAGGTCGCAGCCAACGTCACCCGCATCAT 54044 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 53976 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 53910 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 53844 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 53779 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ====================================== ================== 60 31 99.7 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : ACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //