Array 1 282883-282714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAIUN010000001.1 Streptococcus pyogenes strain 20184V1I1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 282882 35 86.1 30 -.....AC....................TC...... TGACGGTAACTGGGATAGTCTTCAGGTAGG TT [282874] 282815 36 100.0 30 .................................... CGAGCAATACCAAAAGCGTTACAGCTGTGT 282749 36 88.9 0 ............G..................C.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 91.7 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCTCAAAAC # Left flank : AGTCGTTTTTCTTGGCCTCCTTTACCCAACCCTTAAGACTTTCACACAAAGGTTAAAAACCAAACGTTTCTGGCTCCTTCAAAAACCTTTAATACTAGCAGCTTTGTTTCCTCTTATGATTGGTCTAATGGCTAGTTTCATTGGGTTTGAACATTTTTTTACTCTTTTTCATCAGGTGCTTTTTGTAGGAGATAGCAGCTGGCTCTTTGATCCCTTGAAAGATCCTGTGATTTGGATCCTTCCAGAAGTCTTTTTCTTGCACTGTTTCCTTTTCTTTATGATAGTTTACGAAATCATCCTGTGGAGCTTAGTAGGTTTAGCAAGATGGCAGCGCCTAAATGTAGAATGATAAAAGGATTAAGAGATTAATTTCCCTAAAAATGATAAAACAAGCGTTTTGAAAGCGCTTGTTTTTTAGTTTGCAGTCAGAGTAGAACAGAAGTATCAAAAAAAGCACCGACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTTA # Right flank : AACATTGCCGATGATAACTTGAGAGAGGGTTAATACCAGTAGTCGGATACCTTCCTATTTTTTTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTGTGATTAAGCCAGATGGGGTTAAGCAAGGGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCTTAAGATTTACGTTTGAGCGATTCGAGCTAAGACATGCTAGTTCGAGATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGATAATTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTAAGGATGCTCTTTGCGGAACCATTCGTGAGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTATTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGACG # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 156192-155765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAIUN010000004.1 Streptococcus pyogenes strain 20184V1I1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 156191 32 100.0 35 ................................ TTAAATGTCCGAAAAAAACTTGCATCGCAAACAGA 156124 32 100.0 33 ................................ TCAGCCGTCAAGGTGAAGGAGGTGGAACTGTCA 156059 32 100.0 34 ................................ TTTGATTTTTGTAGCCGTCTCTTACGAAAAGAGC 155993 32 100.0 34 ................................ TTTTGGCTCTTTTTTTAATAACCGTGCACTGAAG 155927 32 100.0 34 ................................ ATCATTGTTCGACAAAATCAATTATTATTAATTT 155861 32 100.0 33 ................................ ACTTTGGTAATGCGACACCTAAAAATTATGCGG 155796 32 93.8 0 .....G.........................G | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.1 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : ATGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTTATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //