Array 1 1-959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYSP01000024.1 Propionispora sp. 2/2-37 isolate 2/2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1 30 100.0 36 .............................. TGTATTGGCCGGAATGTGGTTGGGATGGAAAATATT 67 30 100.0 36 .............................. CCCTCTCCTTTTCTGCTTGGCTCTCGGTGGTTGTGA 133 30 100.0 36 .............................. TTTCCTAATGTTCAGTGACTGGCGGCAACTGCCGCT 199 30 100.0 35 .............................. TTGGCAGGAAAAGGCCCAGGAGATAAGGACGATCC 264 30 100.0 39 .............................. TGATCCGTAGCTCCTATGGAAAAAACTCAAGGGACGAAA 333 30 100.0 39 .............................. TTGCTGAAGAGTATGAGCTGCAGATCATGATTGCCGAGA 402 30 100.0 39 .............................. TCTTTTGATGCAGGCTAAAAGCCTGGAAGCGAAAGTTGA 471 30 100.0 36 .............................. CCTGCTATTTTTACCACAGAAGAAGTCGAAGGACGC 537 30 100.0 35 .............................. TTACAAGCCCTGATGCAAGAGGCAGGGCTAAATAA 602 30 100.0 36 .............................. TACTTATATAAGAAGTCGGCCAAACTTTTAGTACAA 668 30 100.0 37 .............................. CGGCACCGGATATACCGATGATAAACATGAGTACACG 735 30 100.0 37 .............................. CAGTCATGGGCGGACCGGCAGCCGACGATGTGGCAGC 802 30 100.0 36 .............................. CTTTTTGAATGCTAGCAGCTAATTTTTCGTTTCCTT 868 30 100.0 33 .............................. TGCCAGCACAGGCGGTTTTTCTTCTGTTCCGGG 931 29 73.3 0 ...-T...T..G.....GC...T......T | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 98.2 36 GTTGATAGACTACCTATAAGGAATTGAAAC # Left flank : | # Right flank : TTGAATGGTAATAGGCTATTGTCGTATTTTGAGGAGCGCCGCTGGCAAGTCGGCGGCCAACTTTTTATGTCCGGCTTATTAGGAAGGAGGATGTGGTAGCGCATATTTACCATATTGATCGAAAAAGTGAAAAAAATATGTTCTTTATATGATTGTATATGGAAAACGAGAGTTGTTATACTGAGGATGGTGTCCCTTGGATATTTCATGTGAGTCATAGGGGTGACAGTAATGAATTTGCAATTGTATAAAGCGATTATCAAGGTCCTGTTAGAACATCAGCACTACATAGCCGTAGTAAACATTGCCGCCCAACTGGCTGTATCCGCCAAAACCATTCATAATTATTTGTCGGAGCCTGTTTTTCATGAAATGATCCGGCCCTGTACGGTAGATAAAAAGCAAAAATTAGGAATCAAATTGATTGGCAATGAAAATCAGCGTAATGAATTATATGAAAAACTGTTGTTGGCAGAGTACCCGGCCAGCCGCCAGGACTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 685-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYSP01000033.1 Propionispora sp. 2/2-37 isolate 2/2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 684 30 100.0 38 .............................. TGATTGAAGTTAAGGTAACTCTTGAGGATGATAATACT 616 30 100.0 38 .............................. CTACCTATGTCTATTTTACCCTATTGACACGCCCTAAA 548 30 100.0 35 .............................. TTGGGTCAGCGCCAATTCCAGCCGCTTTATGCTGG 483 30 100.0 38 .............................. ATAATTTTTGTTCTAGCATCAATCAGCACAATCTGAAG 415 30 100.0 38 .............................. ACCCATAGTCCACGAAGAGCTAATAGACACAATATGCC 347 30 100.0 37 .............................. CGGGCAATAGCAGAAGATAGAAACGACCTCTTACTGG 280 30 100.0 36 .............................. GTGATAAGCGCGTCCTTAATCCATTGGTAATCCTTC 214 30 100.0 37 .............................. ATAAGCAATACATGACTTTTAGTAAAAGAAATGCCAC 147 30 100.0 38 .............................. TCATAAAAATCTTGTGTTGATTGAGGATTTTTGTACGG 79 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 100.0 37 GTTGATAGACTACCTATAAGGAATTGAAAC # Left flank : CTGCTCATTATATATTGAGGCTCGATAGTAGGTGATGAATTGTTTATAATTTTGGTGTATGATGTTAATGAAAGACGGGTTAACAAGGTGTTGAAAAAATGCCGTCAATATTTAAATTGGGTGCAGAATTCCGTCCTGGAGGGTGAAATTTCTGACGCTAATTATAAGAAATTAACAATGGAGTTAGAAAAAATTATTGATAAAGAAGAAGATTCCGTTATTATTTATAATATGCGGACGACCCGCTATTATAGCCGACAAATTTTAGGCATGGAGCGTGCAAGTACAAGCAACATGATTTGAAAAATTTGTCGTCGACCTATGGTAATGCAAAAATGCCGGTAGGTCGACGACACTTTGTATATTGCAGAAATGTAGTAAGTATAAGGAAGTTTGCTCGTAAAGCCTAATAAAGGAAAAAATTTCATGGTCTGATGTTAAATATTCATGAAAAGCCACGAAGCCGTATTCTTATTAAGACTTCGCTGCTTTTAAAATGG # Right flank : CTAGGTGTTGTCGTCAACCATGGTTGAGTATGCACAATGTTGATAGACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 354-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYSP01000017.1 Propionispora sp. 2/2-37 isolate 2/2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 353 30 100.0 38 .............................. CTGTGTCTTTTTCTTCTTTTTCCCCGGCCCCGCTGTAC 285 30 100.0 38 .............................. CACCCTTTACAGCGTCAAGCATGGATGCTATTTCTCTG 217 30 100.0 36 .............................. ATACCTTCATCTATCTTTTTGTATAGTGCTTGCCTA 151 30 100.0 36 .............................. AGGCAGTATTCAGGCTTCGCTTGGGGAGATAGTTTC 85 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 37 GTTGATAGACTACCTATAAGGAATTGAAAC # Left flank : AGAAGCAAAGAGAGACGGAGTTAGGTCTTGAAAGAAAAGACAAAACTGCCGTCTCTTTGCCTATAAACAGTTAGCGCAAGGCTATTAAACCGAAAGAACTGGAATAACTAAGTGGGAAAGTAAGGGAGCGGGAGAACTGTCACTGTTTGCTAAGAAGTGATGTAGTAAGCAATCGATCCTGATTTTGATATTCGCAAGATACTGGGTTGCACTTTCAATGATATGATGGTATCTTTAAGAAGAAATAGAAAAAACAGGATGAATTGTTCTATTCTGAATGATAAAGCGCTTTTGGGAAAAAACGTTTTGCCTTTAATCCGTTTGTCGTCGACCTCCAGTAGTGTAAAAACACCGGGAGATCGACGACAAACCGGCCGTTAATTTCAAAGCCGGCCAGATAGGGCTTTACGGCATATTTGATGAGTCAGAATTGTTTGGTTTATCCTGTGCTTTTTTTGGTGAAAAACGAATAATGTCTTGATTTATTAGGCGTTTGATGG # Right flank : CCCCTTTCCGTGTTCATGGTTAATATGGCATTGTCCGTACCGTTGATAGACTACCT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 2 7836-7075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYSP01000017.1 Propionispora sp. 2/2-37 isolate 2/2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7835 30 100.0 38 .............................. ATGTGTACCTGAAAGACAACCCCGGTATCATCCCCTAC 7767 30 100.0 37 .............................. GAGCGTAGAGCGCACTGCTTTGCAGCAATTAGTGTCA 7700 30 100.0 36 .............................. CGACATAGCCAAAATAAGTGTATCTCTATATAACCG 7634 30 100.0 38 .............................. CTAGTTTGCCGCTTCGCATATCCATCCAGGCCGTTACC 7566 30 100.0 35 .............................. CTAAATGAGGCCATTTCCCGGGATGCGACTGATTT 7501 30 100.0 35 .............................. AAGGTGGTTTCTTTTCAGGATATTTCACTACATTA 7436 30 100.0 36 .............................. TAGGGACGGTGCTGCGTCTTGGCTAATGTGATGATC 7370 30 100.0 37 .............................. ATGACACGGTCCCCGATCCACTTTCTAAGCCGGGGGA 7303 30 100.0 38 .............................. TGTGCTAACACAAACCGAAGCCCCCGCCTGCCTCATTG 7235 30 100.0 36 .............................. TTATTCAGGATGCAAAGGAAACCGGCGTACCGGTCG 7169 30 100.0 35 .............................. CAGGCCAAAGCCTTTTGGAATCTGGTGGTATTGAC 7104 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 100.0 37 GTTGATAGACTACCTATAAGGAATTGAAAC # Left flank : TATTTTTTGTCAAAGGGTCATTGACGAAATGAGGTAGCTTTTTCTATACATACTAATGTTGTGTTATGGATAGAACTCTATTATAGGGGTGATTTCGTGGACAAGAAACCAAACAGGTTAATAAAAATCACCGTATCTGATGCAGCATGCGTATAATCCTGGACGTGTCAAGGGGACGGAGTTATTGACAACCTATTTACCGTACCTGTTTTAAGTCGTCGGCAACCCGTCCCCTTGACACGCTCGTAGAAAAACTAAAATCGTCCTTCCGGTTTTCCGGCAGGATTTCCTGGATAATTACGGAATACAAGAAGAAAGCATTTATCCGGTTATTTCATACTTACGAGCATTAATAAAATGTCGTCGATCGGCAATAGCGTAAAAAACCTGGGAGATCGACGACAAACTGAATGATGCTTATGCTGGATTTTATGAATGGAAGGGCAACTTTTATTGTTTTTTGACATCTCACGAATGCAGATTTTCTGCGGCTAAAATGG # Right flank : TCGTTTTGGGGCTGTCCGCTTATATAAAGGCTAATCACTTTAAAAAAGATATACAAAACCTTAGAATATAAAAAATATCTTTCTATCTTGATTTCATCGTTTATAAGGATTTTCTAATATACTCTACGGTTCGTTTATTGATAGTGATTGAAATATAATTTAAACTTAATTCTGGGGATGGTGAATTGACTAATTTAGCTAGAGATTATCAAAAATACATTTCCTTATTAACGAAATGGTCTGAAGGGTGGATAAGATGAAAATAACAGCATTTAATGGAAGTCCTCGCGCAGCTCAAAGTAACACGCATATTATTGTACAAAAGTTTTTGGATGGTGCGAAATCTGCTGGGGCTGGGGTAGATAATGTTTTTCTTATTGATAAAAATATTAGCCATTGTAGCGGGTGTTTTTCATGCTGGTTCAAAACACCTGGACAATGTGTCTTTACTGATGACATGAAAGAACTAATAGAGAAATATGTGACCTCCGATATAATTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 499-728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYSP01000037.1 Propionispora sp. 2/2-37 isolate 2/2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 499 30 100.0 38 .............................. TTGCCATCAGAAGCGTTATTTGTCCGGTTTACTTCTGG 567 30 100.0 36 .............................. AATATGAACCGGAGGGGGCTGACTGATGATCAGATC 633 30 100.0 36 .............................. CAAAAAGGTACAACGCACAAATCAATGCATACAAAG 699 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 37 GTTGATAGACTACCTATAAGGAATTGAAAC # Left flank : GCGTAATATCCGCTTCTGGCTACCTTTAAAATGCGGCATAAATCGCTAACAGCATATTGGGAGCGGTAATCGTAGATAAACTGATATCTTATTTGCTGTTCTTGGCGAAGTATACCGCTGCTTGCTTTAAAATAGCGACTTCATTCTCTAGTTCCTTAATGCGTCGTTGCGCTTTACGGAGTTCATCCTCATCGGGTTTGAGATTCCCTGATCCGGGAAAAGCATGTTCTGGATCACTTTTATATTGTTGAATCCATTTATAGACCGTATTTTCGTGAATTCCTAGTTCCGCTGCCAAACTGGGGCAGGTTCGAGCTCCACTTAGGTAGAGTTTCACGATATCTTTTTTGAACGCTGCATCGAATCGCTGACCTTTCATGTCGGACACCTCCTGGCTTTATTGTACCAGCCATTCTTGATGTCCGCAAAAGGCATTACGGTCCAACCTATAAGGAATTGAAACTAAAGAAGAATGCGGTGCCTGGATCCGTTTCAATCG # Right flank : CGAAACAGTAAGACACTAGGGGTAAAAATATGACATAAAAGCGTTGCTGAAAATTGCAACGTTTTTGTAATATCATGGGATTAGAGGAAGGAATATGAAATTGTAGGGTGAATCATGTACATTAAGATAATTCCGATTCTATTATTAACTTTTTAAAGGATTGATTCATTTGCATATAACTCTGCGTATGAAGGCCGACAATCAGCTAATCTTAGCGATTGATTATAACCATATTGTCCAAAGTACCATTTATCACTCGATTGATGCAGAATTGGCAGATCGTCTGCACGGACAAGGCTTTGTAGCTGATGGTCGGGTTTTCCGACTGTTTAGCTTTTCCCGGTTGACGGGCCCCTTTACTATGGATAAGCAATGCGGACAGATTACCTTTACTGGGGATGTTGATTTAGTTATATCTTCTCCGGTCATGGACTTTATCCAATCCCTTGCAAACGGACTGCTTAAGCAGGGTGGCTGGCGTCTGGGGACTCATTGGGTGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 1482-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYSP01000038.1 Propionispora sp. 2/2-37 isolate 2/2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1481 30 100.0 37 .............................. CCATAGTAGGCATCATGTAGCAAGTGACCGTCGTGAA 1414 30 100.0 35 .............................. ACAAGGCGGTCCAGTTGCTTCATATGGACTTCGGC 1349 30 100.0 36 .............................. CCCTTTAAGGTTTTCAACGCTTCAATAAGTGTCATT 1283 30 100.0 38 .............................. ACAACTGACGAGATCAGGCGGCATGATTAAACTTACAT 1215 30 100.0 38 .............................. TCTGTATCGGGCTTAGTGGTCTTATACTCACCATTTCC 1147 30 100.0 38 .............................. TGTATTGGTGTGTCTCATTAGTCGAAGTCAGCAACGCC 1079 30 100.0 37 .............................. AAGATGACTAAGCGCGAAATGATGGTAAAGGCTCACA 1012 30 100.0 37 .............................. TGTCTGGGATGCTCTTGCACCAGTATCGATGGAACTG 945 30 100.0 36 .............................. AACAGATGTGCAGCATGGAGTCGACTGATTGTCGAA 879 30 100.0 37 .............................. CAAACTTTGACAGGTTCGCCCCCGGTAAGCCACTACG 812 30 100.0 37 .............................. TTGGTTGGGCTGCTTATTACAGCAGGAACCTAGCTAA 745 30 100.0 37 .............................. TTTGCTGCTCTATTGTCTCTGGCACCCGATCACCCCG 678 30 100.0 38 .............................. TAATAATGATGAGGTGATATTGTGCGGGTAAAATTTAC 610 30 100.0 35 .............................. TTTGAATGTCGCTCAGTCGGCAGACACTTTATATA 545 30 100.0 40 .............................. CACCTCCACATAATCATAATCTAATTGCCTCAACTCGTTG 475 30 100.0 37 .............................. TGATGATAGCCGGTTATACAGTGCTTCGATTTACAGT 408 30 100.0 35 .............................. CGTATATCCCCTGGTCCGTGATTTTGGATATCACC 343 30 100.0 38 .............................. TCCTCCTGGGGCCGGATAAGCTGCCGCCCGACGCTTCC 275 30 100.0 37 .............................. ATTGCCGTCGTCGCATCAATGGCCCCTTTTTGGGTCA 208 30 100.0 39 .............................. TTGGCGACCCACAGGGCCGCTGCCGTGGCAGTGGCTTTG 139 30 100.0 36 .............................. AGGGCTTTTTAATATGGTTTTAATTTGTTAAACTCC 73 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 22 30 100.0 37 GTTGATAGACTACCTATAAGGAATTGAAAC # Left flank : ATAAGGAATTGAAACAACGATTCCCACAAATTTTCAAAGCTTGTCCCCACCT # Right flank : CTTTGACGGGAAATGCCAGTTGGAGAAAGCAGCCTGGCGTTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 45-539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYSP01000039.1 Propionispora sp. 2/2-37 isolate 2/2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 45 30 100.0 38 .............................. TTGTTAATGAAGATTGGGGCCTGGCGGAGAATCCGGCC 113 30 100.0 37 .............................. TACAGCTATCAGGTGCAAGCCGTCAGTGCGTTCTAAC 180 30 100.0 35 .............................. TACAGACGTTGTGAAAGACCTTGCTGTTATCTATA 245 30 100.0 36 .............................. CGAGTGTAAAGGTTCTCAGTCAGTTGTTGATCAGGG 311 30 100.0 37 .............................. GGGTGCCTCTATGGGGCTTCTCCAGAACTCTGCCAGG 378 30 100.0 36 .............................. TAGGCTTCCAGAGCCGCATCCAGGTCTTCTTCTCCC 444 30 100.0 36 .............................. AAATCCGTCGACGGTAAATCCACCACTTAGTAATAA 510 30 93.3 0 ............................CT | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.2 37 GTTGATAGACTACCTATAAGGAATTGAAAC # Left flank : TTGAAACCTTTATCAGGGTAACATACTTTAAGCAGTATTTAGTCG # Right flank : GTAATGGCTTTTGCGGACACCAAGAATGGCTGGTACAATAAAGTCAGGAGGTGTCCTACATGAAAGGCCAACGATTTGATGCAGAGTTCAAAAAAGATATCGTGAAACTCTACCTAAGTGGAGCTCGTACCTGCCCCAGTTTGGAAGCGGAACTAGGAATTCACGAAAATACGATCTATAAATGGATTCAACAATATAAAAGTGATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATAGACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //