Array 1 123840-121756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVVT01000108.1 Neisseria elongata subsp. glycolytica strain 1279_NMEN 585_154440_4280693_515+,...,378_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 123839 33 97.0 33 T................................ GTGGATACCAATCCGAACTTAGCACCGATATTA 123773 33 100.0 33 ................................. ATATCAAACTATTATACTTCACTACAATTTGAT 123707 33 97.0 34 T................................ TTATGTAAGCCATTCAAAAACCTCTACTTAATCT 123640 33 97.0 34 T................................ CAAGCAGCCGTTGTCTAGGCAGGTTATTACAGCG 123573 33 100.0 32 ................................. AAAGACTTTCAGACGGCCTCCGACGAGGCGAA 123508 33 97.0 32 A................................ AATCGCAGGTAAGCACAAGTGCTCCCATTCTT 123443 33 100.0 33 ................................. GACCAGCCGTCCGAAACCCTGCCGCTCCCTCCC 123377 33 97.0 34 G................................ TTTGCTGACTTCGGAAACACCGAGCAGCCGCCGC 123310 33 100.0 34 ................................. CAATATCGACTTGGCAAGGAACGAAGTTTTGCCC 123243 33 97.0 33 A................................ CACTTCGCATATTCACAGGCGTTCGGGTATGCA 123177 33 97.0 33 G................................ AATTGTTTGCTGATTTGAAGTCCAAAGACTAGG 123111 33 97.0 34 T................................ ACCAAGATTCGGTTGTTGTGGTCGAGCGGCACCA 123044 33 100.0 33 ................................. AAACACTGAAGGAATTGAGGCATAACGGCTTTA 122978 33 100.0 32 ................................. CCCATAAAGTGACTGATGACCTAAGGTCTTTA 122913 33 100.0 32 ................................. TTTTATTTTGAAAGGAAATAGCATGTCTATTT 122848 33 97.0 33 T................................ TGATAAGCTCAAAAAGCCTTGGAAGAAGCAAAA 122782 33 97.0 33 A................................ CCATCCTGTTTCAGCCGCCATGCAGCCGGTGGC 122716 33 97.0 33 A................................ ATATTGGGTTACGTGATTAAAAAACCGCGCGGC 122650 33 100.0 33 ................................. CGCGTAGCCCTAAGGGGCATCACAAACGAGATG 122584 33 97.0 34 G................................ ATTTTTCGCCCCTACACCGTCAGCATAAAGAAAA 122517 33 97.0 34 T................................ GCTCATTCTTCGCTGCGCACTCCGTTTGCTCCCA 122450 33 100.0 33 ................................. GGCGCGGAAGCAGTGGCCGAAGCAGAAAACCGT 122384 33 100.0 33 ................................. CGGTAACGGATGCGGCCATTATCACGAAGCCGC 122318 33 97.0 33 G................................ GATGTATGAGCTTGTTCAAAGGCTTGGCTCGGA 122252 33 97.0 34 G................................ TCCAATAAATCTAACTGAACTTCACTGGCCGTCA 122185 33 97.0 32 T................................ CATAGGGCCGAATTCGAGCGTAAAACTGTCTA 122120 33 100.0 32 ................................. CAAACTGATCCCCCTTAAATGTACCGCCTGAA 122055 33 90.9 33 T............G........C.......... TCCCACGGTTTATCACGGCTGATGGTATTTTCG 121989 33 90.9 34 G............G........C.......... CACCATACGGTGTACATCCCCGTTCCGGGCGGCG 121922 33 90.9 34 A............G........C.......... TAGGCAAAGACCGCGACCGAGAAAAAGCCAAATT 121855 33 90.9 34 A............G........C.......... CAAGTGGACAAAGAAGGCAATATCAGCACCGCCC 121788 33 93.9 0 G............G................... | ========== ====== ====== ====== ================================= ================================== ================== 32 33 97.2 33 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTACAGTATTCGGTGTTTGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCACAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGTGAGCCTAGCGAAATCGGGGCTGCTAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : GTTCGCCACCTCCTATTTTAAAGAGGTGTCTTGATCTACCGCATTCAAACAGCCATAGCCAACAAAATATCCTCGCTAAATGATCTGCTGTTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCATACTAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGAGCATATGGAGATGCCGTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGCAATCATTCAGATAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACCGGTTTCTATATCGCCCTGTTGAACATGGGTGATTATGATGAGGTATTGCAACTGATTGAAAATACATTGAAAGATG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //