Array 1 41150-42109 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHE01000014.1 Dolosicoccus paucivorans strain UMB0852 ERR1203602.17957_1_14.14, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 41150 36 100.0 30 .................................... TTGCTGTTAGTTCCTTTTGCCTTTTGCCTA 41216 36 100.0 29 .................................... ATACAAGCAATTTCTTATGCGGATGACAT 41281 36 100.0 30 .................................... ACGGCCTTTGGCGATATGGCGACTCGGGTT 41347 36 100.0 31 .................................... ACGGCGCTTTCAAAGATCCTAAAGTCACCGC 41414 36 100.0 30 .................................... AATAATGGATCGAACATCACTCGCCGTGAC 41480 36 100.0 30 .................................... TGTCGGTTTTTCGTTCGAGGTTACCTACCT 41546 36 100.0 31 .................................... TGGTAAGCTATTCTGATCATGAGGTAGCGAA 41613 36 100.0 30 .................................... ATGAGGTTGCACCGTTAACGATTGGTGGCA 41679 36 97.2 30 ...........................T........ GTGAAAAGCGTTCGAAAGAAAACGGGGCTA 41745 36 100.0 30 .................................... GAAATTGAAGAAGAAAGTGGCGACAACCTC 41811 36 100.0 29 .................................... TTATAAGTCACTTTATACCCGACAGGACG 41876 36 100.0 30 .................................... CATAGTAGTCTTTTATTTTGCTTATAGCGC 41942 36 100.0 30 .................................... CTGTAAAGTATCGGCATTAGAGTAGTGAGT 42008 36 100.0 30 .................................... CTAATAAATTTTATACTATTGTAAAATATT 42074 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.8 30 GTTTGAGAGTAATGCAGTTTTTTAAGGGTCTCAAAC # Left flank : TATCTACAAGCAGACTATGAAAAAGTGACAGCTTTGAAACAGACTATTGTAGAAATTTTTCGGGAGTGTTATTTTGACCAAGAATTTGATGTGTTTGTAGGGGATGAGTTAAACTTAAGGACTTTTGCGAAAGTATTAGACATTTCTGTTGATTTTGATGCGCCGACCTTAGTAGAGAGATTAGTAAACTATATCGAAATATCCCATCGATTAGAGCTGTATAAAGTATTTATGCTAGTTAATCTGTCACTATATTTGAACAAAGAAGAAATCAAACTGTTTAAAAAAGAAATGGTTCAAAAGAAAATTCCTATTATTTTACTGGAATTCGATCATACGCACTCTAGCGAATGGGAAACAAACTTTATTGTCACTGAAAATCTCAGTGAACTCTTTTAATAACTATGTTATAATAAATTTTGTCGATATAGTTTTGAGACAACAACTTAAAATTAAATTCGCATTCCTCTTAAATGCTCAGCTTACTTTGGAGATTTGAG # Right flank : TACTATAACCTACTAAAGTTTAGTTGTCAGTTTGAGAGTAATGCAGTTTTAATAACTAAATTTAAATACATGATGAATTGCAATAATTATTGCGACAAAAAGTTATTCTAACTGAACGAGTTCGTGCATGAGTACTTCAAAAGGTGTTTTAAAATCTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGCAGTTTTTTAAGGGTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 28500-29183 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHE01000003.1 Dolosicoccus paucivorans strain UMB0852 ERR1203602.17957_1_14.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 28500 36 100.0 35 .................................... ACAACAGATATGACGCCTGTTGCGGCGTTTATCAA 28571 36 100.0 39 .................................... AAACAAACATGACTTGATACCCTTGCTCGATCGCTTCTA 28646 36 100.0 39 .................................... GTGTGACAATTGTTTGATGACGTATCAAAAAGACGATCT 28721 36 100.0 36 .................................... TATCGCGACGACTACCGTGTAGGCGATGATATTTAC 28793 36 100.0 34 .................................... CGTACAGCTTGAAGTCATATATAGACCAAATATT 28863 36 100.0 35 .................................... CTAAATAGCCCCATGCTGTGGCTACGGCACCTTGT 28934 36 100.0 34 .................................... GCTATTGACCTCTTGCACCATCGTCATTAATTTT 29004 36 100.0 35 .................................... TCAATATGGTCTTGAATAATGTCATGTACGGCTGT 29075 36 100.0 35 .................................... TGAAACGTTAAGCCGTATTCATTAGTGAGTTCTTG 29146 36 94.4 0 ...............................T...A | TT [29177] ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 99.4 36 ATTGATGAACCTTATTCCTCGTAAGGGGACGGAAAC # Left flank : GTCCTATCGGGAGACAATAATCGCTTCTTTAAACATCCTACGGCCCATCAACTGTTGAATATAGTCAGACATTATTATAAAGGCTCTACTGCAGTCGTTAAAAACCTTGAAAAAATGCGAGATTTTGAAAAAAAATTAAGAAACGTAGTAGCTCATCAACCGCGTGCCTTTTCAAAAGAAGAGATTATAAAAATAGCTCACATGAGAATTGAAGATTTTAACAAACAAATTAGGGTTCTTGCTCAAAATTGTAACTTCGTTTCAAAAGAGCAATGGAAAGAATATGACCAATTAAATGAGTTGTTAAGTGAATTACTAATTTAGAATCTTCTCATAAATATATCCTTTATTTTGAACTCAAAATCAAAGTAGAGGATATATTTTATATTTGTTATACTAACGTTAGGTGGTATCAATGAATCTATTAATAGAAAACAAACTGATTTTGCATACAAACACTATATATAGTTTCTTTTTTATTATAGTACACAAAATGTGCC # Right flank : ATAAATGCAGCGTAAAAACTCTTCATTCTAACAATTGAATGAGGAGTTTAGTTTATTTATAATTGGAAAGATGATAAAATGTGAATATATTAACTTGAGTGATAGGTAAGAAGATGTTAGATAAATAAAGGGGTATTATGAAAGAAATCTATATATTTGAGTCGGCGCAATCTCTTCATTATCGAGATAAAAAATTAATTGTTCAGAATAAAGAAGGTAAAAAGGCTTACGAAGTAGCTGTTAGTCAAGTCAAGCGGGTCAATATTTTTGGAAACCCTACAATTACGACTCAATTACTTAAAGCTTTAGCTCTTAACAAAAAAGAAGTGCATTATTATTCTCAAAATGGAAAGTATTTAATGAGTATGAATTTGCATTACGCGGAAAACTATTCAAGGCAACAAGAACAAATATTGGCGTTATTGGATGACTCCTTTTCTTTAGCGTTATCTAAAAGATTGATCCAATCAAAAATAAAACTCCAAGCGGAGTTATTGAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGATGAACCTTATTCCTCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //