Array 1 295857-296091 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMRT01000002.1 Paenibacillus piri strain MS74 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 295857 33 81.8 35 ........C.TCAT......C............ AATTCTTCCATAGCCGTACCAGCCTGTCCCATGCC 295925 33 90.9 34 .........A.........AC............ CCTCTGCGGACACTGGCTCGACCTTCCCATCCCG 295992 33 100.0 35 ................................. TAATGAAGAATGTATGTAACAAGTGATCAAGCCAA 296060 32 81.8 0 ........C.-.C.TA....C............ | ========== ====== ====== ====== ================================= =================================== ================== 4 33 88.6 35 GTCGCACCTCATGAGGGGTGTGTGGATTGAAAT # Left flank : TGAAATCGAAATGATCTATGGGTACTTGGTATATTTATTAAATTAAGCTGATCGTCCCATTCAACCACATCAGGCATCACGTTTGCTGACACTTCCGCTAAGCGTTTGCTGGATTTTTCCCGCAGGACGCATTAGTAATACGAAGGGGAGAGCAATAAACAAATCGTATGATTAAACTTATTGCTTTCCCGGGTTATAAAAAAATCAAGTAGAGTAGTCTATGCTCACGAAAGAACCGTTACCTATATTTCTACAGACTTCGAAGAGAACGGTAGATGGCTTCTTAAGTAAAACATATTGATGCACAGAAATCACTTGATTTAGAAGGTGCTATAATTTGGTAGTACGAACATGCAGTTCACATGAATTTCCAAAGAGGTTCACACCTGGAAAATGGATGTGAATACCAAATTATTCACATTATTATCCAGATTATTTATTGAATTATTCCTGTTTTTGGTCGCAAATGAAGTTCATGCATAATTGGGTTAAAAATCGCC # Right flank : TTAGCGTACCTCATCGACGACCTCGTCCAGCCTGTTACCCCGATGCATGAAGGAGGAACCTCTACATTCATTCCAGTTCATCGTATTCTCTAAATCGCAAGCAATCCGATTGGTTCGAAAAAAATTTTTTATCCATTTACTCGTAAATGTAGTACAAAATAGATGGTATAATGTTCCTATACTTTCTGCATATTTCGTAGAGTTAAGGAATTTGAATGTTCCTTCTATTATCCAGAGGAACTAAACATAAATCTTCTAACATAAGGATGGACCTTAGGAGGGAAGAACATTCTTTCATTTGCGAACAACAACAGTATCAGGTAAAACTTAATGCGCAGGATAATTTGATTCAGAGGGTCATTTAATTTTGTAGTGTGAACATGCGGTGCGAACCTGAAGCACACATAGATTTCCAGGGGGTTCGCACCAAGGAAATGGATGTAAATACCAATTTAATCATATTAAAGTCCATATTGTTTTGAGTAATTATTAAAATATGT # Questionable array : NO Score: 6.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.43, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGAGGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 296644-300271 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMRT01000002.1 Paenibacillus piri strain MS74 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 296644 33 97.0 33 ................................C TCCTTCAAATTCTTTAAGATGCTCATGACCCGG 296710 33 100.0 33 ................................. ACCAACCAGCCATTGATACCTGGCGGATTGTCA 296776 33 97.0 35 ................................G TGATATTCATCGGGGTCAAAACATTCTCGTTTGAC 296844 33 100.0 32 ................................. GGCCGATCCCTGCAAAGAAGTTGGACAGCAAA 296909 33 97.0 32 ................................G ATAATGCCGCCTATTTCACGTTGCAGCGTAGA 296974 33 100.0 33 ................................. TGCACGAATCTATTGTCCAACGCGTTGATACAT 297040 33 100.0 34 ................................. TCCTAACGGCGCCAATGACTTGGCTGCTGCTATT 297107 33 97.0 33 ................................C CTGGAGTTGCAGGAGTGCCGTCCGGATTTTTAC 297173 33 100.0 34 ................................. TCTTGCCATAACGGTTCAACAGTCTGCCGCGCTG 297240 33 97.0 35 ................................C GGCTGCTGCTTTGTCTTCCTCCAGCTGTATTCCTC 297308 33 97.0 34 ................................G GTGTGACGGACGAGGAATTGAGGGAGGAAGACGA 297375 33 97.0 32 ................................A TGAAGGCGCTTAGGTCTTACCCGTCTATCCAT 297440 33 97.0 33 ................................C GCCAAGTTCTTCGCCTGATCAGCGGCAAGCTGT 297506 33 97.0 34 ................................C TGTGGTTAAGTTGGATATCAAGGGCGAATCGTTG 297573 33 100.0 35 ................................. TCGAAATTGTTTTGAATCAAGCAGATACGCCTTAC 297641 33 97.0 33 ................................G CCATGGACTCGTCCCCTTTTAATAAAACTCAAC 297707 33 97.0 34 ................................G CTATCCCAATGAAGTCCATCGTCCTACTCAAATC 297774 33 100.0 35 ................................. CATCTTTTTTTTGAAAATCATGATCAGCCACAACA 297842 33 97.0 35 ................................G TCCGCAACCACGACCCTTATCTAATCACATCCATC 297910 33 97.0 34 ................................C TCAATATGCTTTTCCGTCCTAACATTACTACCTT 297977 33 97.0 32 ................................G TAGATCGTGTGTTGTTTATCATCTTGTTTTAC 298042 33 97.0 33 ................................A ATCAATTGATCGGCCATGGCGATTTGCTTTTTC 298108 33 100.0 34 ................................. GCCGTGCTGGTAGCACTCCCGAGAATTGGATGAG 298175 33 97.0 33 ................................A TCTGCACCCTGTATCCCTCCTCATAATTCTGAT 298241 33 97.0 36 ................................G CTGTGGCCTGCGCAGTGTTTACCCGCGAGTCCAAAG 298310 33 100.0 35 ................................. GTGGTATCATTAATAGATACCAGACCTCTTTGAAC 298378 33 100.0 33 ................................. GGCAGTTGGCTCTGCTTTGACAGCGGCCGTTAG 298444 33 97.0 34 ................................G GTATCAGCTGGTTGATCAGCGTCACTCGTAAAAA 298511 33 97.0 33 ................................A TTTTTGCCTGTACAACAAGCCTACGCATATCCC 298577 33 100.0 33 ................................. AATCCGACTCCACGTAATCCAATCGCCTCTCCG 298643 33 100.0 35 ................................. AAATAAAGGCGAAGGGGGCAAACTGTACTCCTAGA 298711 33 97.0 34 ................................G TTATACATGCCGACCATTAATTCAGCGTTCGGGA 298778 33 97.0 34 ................................C GCTTGGAAGTACTGACGAGTGAGTCTTGTAAAGT 298845 33 97.0 35 ................................A TCCTCTCTCTGATCATTGGCACCCTGTTTATGGAT 298913 33 97.0 33 ................................G GCCATAGCGATATGAGGGTCACTTTACGGTATA 298979 33 97.0 34 ................................A TAGACAAAATAACATCACCGGGATTGGACTTAGG 299046 33 97.0 34 ................................A TCTTTGGTTATAGGGGGTAGATAACTATCGAAAC 299113 33 97.0 34 ................................G ACTAGAATCGCAATCATTCGTGGCTTCGGGTACA 299180 33 100.0 33 ................................. GCGGTGGTGTACCGCTTGCCTGTGTTGTTGGAA 299246 33 97.0 33 ................................C GAATCATGATCATTGGATTAGCACGGGTAAGCA 299312 33 97.0 33 ................................A GATATGAAACATAGGGAATACAACTTAGATGAA 299378 33 97.0 32 ................................A CATTAATTTTATCACCTAGTTCAAACGCCTGG 299443 33 97.0 32 ................................A CCGATTGAGGCGCTAAAGAATCCGCGAGGCAA 299508 33 100.0 33 ................................. GATAGTGCATTTCGACCATTTGCCGTAGTTCGG 299574 33 97.0 33 ................................A TCCAAGTCCTTCCGAATGGCAATATCCGTGCAC 299640 33 100.0 33 ................................. GGATCAAAAGGACAAAGTTCGTACGATCGTAGA 299706 33 93.9 34 T...............................G GGAGGAAACAGCCTAATGGATGAATTTGAATTTG 299773 33 100.0 33 ................................. CTGATGATGCAATCAGCTATAGAGGCTATCGGG 299839 33 97.0 35 ...........T..................... CAACGTATCCAACACGCAAGTTTGAGGAATGGAAC 299907 33 97.0 32 ................................G CGTCGTCGTCATCACCAAGGACGGCAAGTCCT 299972 33 93.9 34 A...............................A AAAAGCCAAACGGTAACGAACACGAGGTTACAAA 300039 33 97.0 35 ...................T............. TTAACACTTAATACAGCATCTGTAGTGCAGCCGGT 300107 33 90.9 34 ...........T........A...........G CTGCTTCGGACGAATGGTGTAACGAACCGTAACC 300174 33 90.9 33 ...........T........T...........A GCTATGGATATGCCAATGCCGGAAGTTGATACG 300240 32 90.9 0 ......-...........A.............G | ========== ====== ====== ====== ================================= ==================================== ================== 55 33 97.4 34 GTCGCACCCCGCACGGGTGCGTGGATTGAAATT # Left flank : AGGAACCTCTACATTCATTCCAGTTCATCGTATTCTCTAAATCGCAAGCAATCCGATTGGTTCGAAAAAAATTTTTTATCCATTTACTCGTAAATGTAGTACAAAATAGATGGTATAATGTTCCTATACTTTCTGCATATTTCGTAGAGTTAAGGAATTTGAATGTTCCTTCTATTATCCAGAGGAACTAAACATAAATCTTCTAACATAAGGATGGACCTTAGGAGGGAAGAACATTCTTTCATTTGCGAACAACAACAGTATCAGGTAAAACTTAATGCGCAGGATAATTTGATTCAGAGGGTCATTTAATTTTGTAGTGTGAACATGCGGTGCGAACCTGAAGCACACATAGATTTCCAGGGGGTTCGCACCAAGGAAATGGATGTAAATACCAATTTAATCATATTAAAGTCCATATTGTTTTGAGTAATTATTAAAATATGTGTGTTTTTGGTTGTATTTATGCGGTTTTGGGCATATTTGGGTCAAAAATCGCT # Right flank : GACAACGGGTTCAGTCGTCTGCCTTTCAAACAGGAGGTCGCATCCTATACGGAAGCGACCTCCTGCTTGAAAGATCGTGTATATTTTTCAATATCATCCTCGATCCAGACTATTTAAAAAGTATTTCTCCTTTTATGTAGCAATAGTCCCCAAAACAATGGTAAAATAGTATAATATTCCTATTATTTCTACATATTTCGCAAGTTTCTTACCATCAGACTTATTATAGATTGAATTTACGATATATGATTACAATCGGTAAGAGAAGCTTTTCAGATAGCAGCATGTGGCAGTGTTAGGCAGTCGGAAAACCCATTTAGAGGTTCTATGGCTATCAACTTCCAGATCAATCGATGAATGAGCATTTTGCAAAGAACAGGGGGAGCTAAAATGAACTACATCGCCCATGTCCGTGAAAGTGATAAGCAGATTCAAAGCGTCGAGGAACATTTGCTTGGAGTCAAAGCTTTGGCAGAATCATACGGTGAGAAGATTGGCGT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCACGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 308743-312195 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMRT01000002.1 Paenibacillus piri strain MS74 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================================================== ================== 308743 33 100.0 35 ................................. ACCGTAGCCGTCTCTGCGGGCTCCTGCTGGCCGGT 308811 33 100.0 32 ................................. TATGCAGATCATTATTAGCTTTCGCTTCGTTG 308876 33 97.0 33 ................................C CCGACTCGATGTAGTAGTCAGCGAAGCGCTTTT 308942 33 97.0 33 ................................T GCCCAGTCGATGGTATCGATTACGAGCGACCCG 309008 33 100.0 33 ................................. TCCACATCGGATTGCCCATTTCCTCCAAGATTC 309074 33 100.0 33 ................................. ATGACTCAATAACCTTTGCTTTATCAAAGATAC 309140 33 97.0 34 ................................C ACTAAAATGACGCTGGAAGAATATATGACTATGT 309207 33 100.0 35 ................................. CCAGTACGCAGCGCCAAAGTAATCAATCCCTTGTA 309275 33 97.0 32 ................................G TCCAAACCGCAAGCTTTAGCGGCTATCATCAT 309340 33 97.0 33 ................................C GCCTACTGGAAATTCAACTTGTGTTCCTGAGAC 309406 33 97.0 33 ................................T ATTTGCCCCTGATACTGTAAGCAGCTTTTTAAA 309472 33 97.0 34 ................................C TCTTGAAGATCGTATATGGTAATAAAATGGGGGA 309539 33 100.0 34 ................................. ATGAAGCGGCGCCGGTCACAACTCCGGATCCGAC 309606 33 100.0 32 ................................. GAACCACAATGAACGTCTGATCGGTTTACAAC 309671 33 97.0 33 ................................C ATTATCGTCTTGATTGTGTCACGCCTTGCTCTC 309737 33 97.0 34 ................................G AACTGGAGACAAATACACATCAAATCCATATAAA 309804 33 97.0 35 ................................C GGAGGCGTTAAAGGAACTTGGAAGGAGGTCGAAGA 309872 33 97.0 34 ................................G GTAAAAACAAAATCGTTGCCCGCAGCCTACAAGC 309939 33 97.0 33 ................................G ATTTCATGTTCTTTGGCGATACGAAGCGCCCGG 310005 33 97.0 34 ................................C TCGGCGGCGGTTAAGCTCATCTATTCTCGCCCTC 310072 33 97.0 33 ................................T CCGTGATGTTTTCATGCTCAATTTGCGAATATA 310138 33 97.0 35 ................................T GCCATAATACAAAGTCCTGCACCGCCGCATTGACC 310206 33 97.0 36 ................................C CAAGTAAACAAAGAAGCAGCCACACGATGCATCTAC 310275 33 100.0 28 ................................. TGTAACGTAATTTTGTCGGGGAAAATCA 310336 33 97.0 35 ................................T TTCGCGTCTAAGGCATCTTCGACATCGACTCTGTC 310404 33 97.0 34 ................................C AAACGCTTTTTGAAGGGCTTCCTCGAGTTTTTCC 310471 33 100.0 32 ................................. GTTGGTTTCAATGCTTACCCCTCCTATATGAC 310536 33 97.0 34 ................................C CGATCAGTAGCGGCGTTTAACGTCTTAAAGGAAC 310603 33 100.0 33 ................................. GGCATCCACTACGCGGGCGCTGGGACTTGACCC 310669 33 97.0 34 ................................T TCATACCGTGCTTTGAATTTCTCTAACATTTGAC 310736 33 93.9 33 ........T.......................G ATTTGGACGAGGACAAGGCCCATAAAATGGCGC 310802 33 97.0 33 ................................C TATCTATTATATTACACTAATCTATAACCATTG 310868 33 97.0 34 ................................G ACATCAAAGTATACTTTCTTTTCTTTTTTATCTC 310935 33 97.0 32 ................................C CATCCGCGACCGCAGCAGCCGTCGAAGCAGCC 311000 33 100.0 33 ................................. AAACCTCGGTTAGGTTTAGTATAATTTTCCTTC 311066 33 100.0 35 ................................. CATAAAAACCGCCCTCACTTGCGGGTCGAGCCGTT 311134 33 97.0 32 ................................G CCTCTCTGCTGTTCGTATCGTAACCAAAGTCA 311199 33 97.0 34 ................................C TGTCATGCAGCTGCTAAAACGGCCGTGAATGAAA 311266 33 100.0 32 ................................. TGGAGGACTCGACCATGCCGATAGACTTCCAT 311331 33 97.0 33 ................................C TCGCCATGTACCCATATTCCTGATCGGCATTCG 311397 33 97.0 32 ................................G CTTATTACTTTTCTAGCATTGATAAGAGTATC 311462 33 97.0 33 ................................G ATGTAATCCTTTGTAGAATCCAGTCTCCGTTGT 311528 33 97.0 34 ................................G TTGCTGGGGCTGCGGTTCCGCCTGCGGCTGCCGC 311595 33 97.0 34 ................................T ATTGAATTGCAAAGCAAAGTTGCCATGGATGAAA 311662 33 100.0 33 ................................. GGCAGTGGTAACGTTTACGGACTTATGTCATCC 311728 33 97.0 34 ................................C TTTGGTGCATTGATGCGGTCAGCGGCGAGGAAAT 311795 33 97.0 34 ................................T TGACGCTGATCGCGGTGATCATCCCGATCATTAT 311862 33 97.0 34 ...............................A. CCGGTCTGGATGGACATCCGGCAGAGCAACACGT 311929 33 100.0 34 ................................. CTTTCCCTTGGGTTGTTAGGATGTCATTGTACTC 311996 32 90.9 34 ...........T........-A........... AGTGCCGCGGTTATGAGCACAGTATGTTACTTCC 312062 33 93.9 68 .............T..................G TGATAAGTCACCCGATGGGTACCTTGAAACGGGGTCGCATCCCATGCGGAAGAGTCGTGGTCTTGCTG 312163 33 69.7 0 T..T.TT.....C...A...A...T.C.....G | ========== ====== ====== ====== ================================= ==================================================================== ================== 52 33 97.1 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAATA # Left flank : CTAGACGAGTATCCGCCTTTCTTATGGAAGTAGGTGAATGAATTGCTGGTGTTGATTACATATGATGTAAGCACAGTAAGCAGCCAAGGGCAAAGAAGACTGCGCCAGGTTTCAAAAGTATGCCAAAATTACGGCCAACGTGTCCAAAATACAGTGTTCGAATGCGTGGTAGACGCCACTCAATTTGCCGTACTCAAGCTAAAACTTCTTGATTTGATCGATCAAGAACAGGATAGCCTCAGGTTCTATCAACTGGGTAACAACTACAAGAATAAGGTAGAACATATTGGTGTAAAGGAGTCGCTAGATTTAGAAGGTCCTTTAATTTTGTAGTGCGAACCAGAAGCGCACATGGATTCCAAGGGAGGTTCGCACCATGGAAATGGATGCAGGCTCCATTTATTTACATTATTAACCAAATTATATTGAGTAATTGTTGAATTATGCGTGTTTTTGATTGCAAATATGCAATTTCGGGCATATTTGGGTTAAAAATCGCT # Right flank : GAGAAAAATACATTCCGTATATCACAGCATGATGAAGCCTAATCGCACATAGGGCATGTCATGCTTTTTATGTTTTCTCATATTCCGCATAAACGTCAATAAATGACATAAAGCGACATTTTCGGTATGTTCACTCTCGGCGTTATGGAGTATAATGTTGCATGGAAGAGCGTTATAGGCAAGTAATGGAAAAGAGTTTAGGGTGCCTTGAGTCCCATGTCTCGACGAGGGAGAATTTCAGGGTGAATTACCGATATATAGAGAATCATTTGAAAACAGGGGGCCTTTTGTGTGAACAAGCTGATTCAGTATTTTCAAAAGCGGTTGGTGGCGAGGCTTGTGCTGATCGTGGCAGTTGTTATAGTGCTGCTGTATGCGAGCAATATGATTTTGCAAATAAACAACGCCAAGTCGGCCAGTGAGAGCGCGATCGCACAATATGGCATAAAACTGGCGAAAAGCTATGCCGAGCAAATGAATGTGCAGCCTTATAAGGAATT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //