Array 1 143269-143699 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMV01000010.1 Parabacteroides sp. OF04-13BH OF04-13BH.Scaf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 143269 36 94.4 30 .......T.G.......................... CATGGACGTGTTCCCGTTCAACGCGGATGT 143335 36 100.0 30 .................................... TAAACTTGATAGCCCGGTCAATATGTACGT 143401 36 100.0 30 .................................... CATAATCATAAGGAAGTAGATGAATGTATT 143467 36 100.0 28 .................................... CGTATGCGTACTGTCTCCTTCCACGAGA 143531 36 100.0 30 .................................... TTAGGATATCAGCTAGATTTCATCGAAAAT 143597 36 100.0 30 .................................... TGCACCAAAAGCCGGTAAGGTGCGATAGTA 143663 35 80.6 0 ................-...C.........A.TGTT | A,A [143688,143691] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTTGTTTCTACCTTTCAAACTAAAGGCTAATACAAC # Left flank : CAAGCGTAGTAGCATCTTCAATAGCAATATCTTCAATAGATTCTTTTAGTATTGAAAATCTCCAAACAGGAACAGATGCATAATTTTCTCTTCGATAGAATAAGAACTCAGTATCAGTATTTCTAAAAGCTAAAGGTTCAACCTCTTTATCCTCTGATGGATGTCCACCTACATATTTTCCACAAGCATGGAAATCCTCTATTTTTAACCCTCTTTTTGCTAATTTGCCAACGGTTTCCTCTCTTTGACTTTCAGCGAGTTTTATCGAAATATAGAAAACAGGAATACCCACAATTACAGAAATAATCAGAGGTGTATAATCTGTATTCCCATATTCATCTGTTGTACAGGAATATAAAAAAAACAAAATTCCAAATAGTAGTATTTTCTTCATATCGTGTGAATTTAAATGTTAACAATGCTGCAAGTAAGTAAAGTTTATTTGAAATACAAAGGTTTTTCTTGATTATTTAAGTTGATAAGAGTATATATCTTAAAAT # Right flank : TTTTATGCTGATGAGTCATTCGAAAGGTCTTCTAATTTTATATTTTCTATCTTCATTTTAAATTCTGCTATAATCTTTTTTGCATAGACGAAATCGTCAGAAATCTCTTTGATACATTCAGCTTCGTATTTATCATGTAAGAACATATTCCGAGTTTTAATGAGAAAAGAACTATCTATCTTTTGTTTAGTTCGTTTCTCATATTCTGTAATTAGCTCATTAAAATCATAATAATTTCCGGGAGTAGCCTTCTTTAAATCTGGGAACATCGATACCATCGTGATTTCGAAAGAATGAATGATAGGTATGATTTGTATCTGGGCTTCTTCGAAATCTAGGCATTCTCTTTTATAATTTTCATAAGGTTGAATCTTTACGCTAGAAGATATACTATTGTTTCTTTTGACTTTACTTAATACTTTATTCAAAGAGTTGATTCTTGTATCATGATGTATATAAAATAACTTTCCGTAGTCTTTTATCTTGATATCTTCTCCTTG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTCTACCTTTCAAACTAAAGGCTAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 2353-2075 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMV01000007.1 Parabacteroides sp. OF04-13BH OF04-13BH.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2352 47 68.1 29 AAG..T.AG.AT...T...A...........C....CAA.......T CTTGGGGCGAATGGTGACGGTTGGCTTGC A [2337] 2275 47 95.7 30 ...........T...T............................... CACACGCTGGCCGTTCACATAACCCGTGTC 2198 47 97.9 30 ......G........................................ ATAATGGTAAAAAGGTATTGGATAAAATAC 2121 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 90.4 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Left flank : ACCCGTGGGGGATTCGTCTGGGGCTGTCGTACAAGCAGGTTCAAGAGAATGCGTCGTTTACCGGAGTGCTCACAGCTAAGCACTTCATTTATCAGCTCATCCTGTTTATCATATAGCCATTCGTTTTCCTTGGTCGAGAAATGGCTACAGACCCATAACGCTTGATAACTAACGGCATCATCCGGATCGAATATCAGATCGTATAGCTCTGCTTTCCGTTCTTGGTTCCCTTGTACATAAAATAATATCTCATGGATATCCTCTATATGACAGCGGCTTGATAGTCTCTCTTTTAGGTCCATTCTCAATCTTTGTTGTTGTCTCTTTATCTTTTCTGCCGTAAAGTTATAGTCTTTTTAGCAAAGTTTCCCTAGTTCACTTACTTTTGTGCCCCATTGATAAAAGAATGGATAGATATGCGATATATGAATTTATTAAATGATTTAACAATTGATTGTAAAAATAACGGAGGGTGTTACCGAGTAAAGGATCAGTTGAAG # Right flank : TTAATCTGTATTATATGCTGTATATCAACTAGATGATAGAATGGTTAGAAAATAAAAAAGAAAAGTTTCCAATGTAATAAATCCCGTTTTATGACGGGATTTATTATTTCTAGAAAAGCTCTAATTGTTGGCCGGGTGTATTAGGAGGTTGTACTTTTTTCCCATAGAACAACTCAATATTCCCAAATTGTTTGTCTGTAATGCACATTATTCCTATTTGCCCGTGTTCTGGTAAAAATGATTTTACTCGTTTTATGTGTACTTCTGCATTTTCTTGGCTGGCGCAATGTCGCACATAAATAGAGAACTGAAACATGGTAAAGCCATCACGCTGCAGATTCTTACGGAAATCACTATAAGCTTTCTTTTCTTTTTTTGTTTCCGTAGGTAAGTCAAATAATACCAACACCCACATAATACGATATTCGCTAAATCGATCCATGATTATTACCGTTCTGGATACACGATTCTTCGTTGCTCTCCACTGAAACATTTGTAAA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.58%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.90,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //