Array 1 2523209-2521336 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2523208 37 100.0 38 ..................................... ACTTTTTTATTCCCTGCTCCCGTAACTCCAAAAGTTCT 2523133 37 100.0 35 ..................................... TCGATCTCACCCATTTCCTGGTTACGTTCTCATAT 2523061 37 100.0 36 ..................................... AACCTCACATCATCGTATTAGTTTGAAAAAAACGTC 2522988 37 100.0 41 ..................................... ATTTCATTGAGTGATTGAGTGGACGTATCACTCATTGTTTT 2522910 37 100.0 33 ..................................... AGTGTATACACATAACACAACGTATATATACAA 2522840 37 100.0 36 ..................................... TTACATCTTCGGTTTTAGTCATTTTCTCATCTCCAT 2522767 37 100.0 40 ..................................... CCACGGTAAAGTAACTATATTCGAGACCTTTGACAACCAA 2522690 37 100.0 35 ..................................... AGTTTGTATGCCTGTATCGCCCCTTGTGCATACAT 2522618 37 100.0 35 ..................................... TTCGATTCCGACATAAAGAACGTTCCGTATTTCGG 2522546 37 100.0 39 ..................................... TAGTATGACGTTGTATGTAATAATTGTAGCAGGGTAGTA 2522470 37 100.0 33 ..................................... GTTCTGAAGTATATTTGATATCACCGTTTTCAT 2522400 37 100.0 36 ..................................... TTATTCATAATCCACCTTCCAAACTGAAATAGTACA 2522327 37 100.0 37 ..................................... ATAAAAAACCTACTACTATCCGGGCTTATCTGGCTAA 2522253 37 100.0 36 ..................................... TAAAGAGGGAGTACATCAGCGTTCCCAGTGGGCAAA 2522180 37 100.0 35 ..................................... CATTCTGGGTTTGTACATGCGAATCCCACTCTTTT 2522108 37 100.0 36 ..................................... CTACCGTATACACTCTGTTAACGCTTACCTCCCCGG 2522035 37 100.0 37 ..................................... TATCTGATAAAGACAGTTGAGGCTGAATATAGTCCGG 2521961 37 100.0 38 ..................................... TCGTGCCCTCCAGTGTGACTGTACCGATAACACGCGGA 2521886 37 100.0 38 ..................................... AAAAATAGGTTTCCATTCTTCTGATATGGGTAATTCTT 2521811 37 100.0 35 ..................................... CAGATCCCTTCTATATTTCCATCCCATTGTTTCCG 2521739 37 100.0 38 ..................................... TTATCCTCTGGGCATCTATGCCACCCTCCGAGTCCATA 2521664 37 100.0 36 ..................................... CATATTTTATTCCGTCTACATAAATGTCTATTTCTG 2521591 37 100.0 37 ..................................... TAAAAGATTATCTTGAGCTTGATCCTGTAGTTAAAAG 2521517 37 100.0 35 ..................................... TTATTATACTAAAATTGATAAAACATAGAGAAACA 2521445 37 100.0 36 ..................................... TGGATCAGGTGTTGAGAGGTGTATTGGTTTTTATGG 2521372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 26 37 100.0 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TAGATTGCTAGAGCTATATAAACAATAAAGTTTTTCCATCCACTACTAGCATACCCTATACTGCTCTGGATCACGGGTTTTGGCGGTTATCTGATGGGACATTCGAGTGCATAAGGTGCATTTAAGGAATCGAGATTAAGGACATGGGGGGCTTATTGGTAGGTTGAACTTATCCGGAACAACCTCAATGGCATCCAAAACCGTTTTTGTCCCGCGCCAGAGCGCGGCTTTTCCCGTAATTCCCTGAATGAAAAATGATATATGAGACATATTGACCACAAAAATAGCTAAATTTGCACCCCCTTACAGTTTTAAAAACAAAAGTTTAATAGGAAGAAAAGCATATGTTCAGATGTTTCCAAACCATCTGTTTCCAAACCATCAAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTTACCCCAAAAAAGGGCTCATTTTAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCC # Right flank : TCTACAGATACATAATTAGATTGTGTAGAGAGCCCCGATAAAAGATAAATAAAAGGTACACTGTTAAGTCTTCGGGGATGGCTATAATTACATGTTCGCCTGTAACTGGAAAATTTCGTCTCCCCCGAAAACATAACAGTACCAAAAAGGAAAAGATAAAATGAAACCAACACGAGTTCCTAATAATCCTTGTTTTTCTTCTGGGCCGTGTGCCAAACATCCAGGTTATTCTGTTGAAGAGCTGAAGGATACACCTTTTGGCCGGTCACACCGGAGCAAACCTGGCAAGGAAAAATTAGCTGAAGCAATTAAAAGAACAAGAGATATGCTTGGACTTCCTGATGATTATCTCGTAGGTATTGTACCGGCTTCCGATACAGGCGCTTTTGAAATGTGCTTGTGGTCCATGCTGGGGTGCCGCGTGGTTGATGTTCTGGTTTGGGAATCTTTCAGTAAAGAATGGGCAACCGACATCACTAAACAGTTAAAATTAAAAGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 2 2710430-2704908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 2710429 37 100.0 39 ..................................... CACTCTCTTTATGTGTCAACTTTTTCTAATAACCTATTT 2710353 37 100.0 37 ..................................... AATAAATCTTCGCTCTCTTCCCTTGGGTTTAATCGGT 2710279 37 100.0 48 ..................................... GCAATGGCAGAAACATTTGCATTATTTCCGCCACTTGAGATTCGCTTG 2710194 37 100.0 40 ..................................... GAGAGTTTTTGTTTTTTTGGAGGGGGTGATAGTTTTCTAT 2710117 37 100.0 39 ..................................... ATATCGTATAGTCACGGTAGACTTCTTTCTGCACCGGAG 2710041 37 100.0 36 ..................................... TTTTATTCCTCTAATTCTTGTTCCTGTTCTTGCAAT 2709968 37 100.0 40 ..................................... AAGGATTGGATCCACCGGATCTTCAGGTTCCACTATTAGT 2709891 37 100.0 35 ..................................... TAAAACCTCTAGCTCCTTTCATTTTTGTCCTCCGT 2709819 37 100.0 34 ..................................... AAATCTTTAGCTTTTATCCACCGGACATATTCGA 2709748 37 100.0 37 ..................................... TACTTCGATAATTTCGATACCAGCTGGGCAAACCCCA 2709674 37 100.0 37 ..................................... TACCGAAAGAAGTAACTAAGATTGTCGAGGTAGTTAG 2709600 37 100.0 35 ..................................... TATGTTCTGTTCGAGATGTATCGTTGCTTTACCCT 2709528 37 100.0 38 ..................................... TCTTCATCTTATGTTATGCGGGATACACGGTGGCTCTC 2709453 37 100.0 36 ..................................... ATTTTGGAGATGCTTTGAAGCATCGTACTACGAAAT 2709380 37 100.0 34 ..................................... AATCTTTTTAGCCCTTCAAGCATTCCGATTAACG 2709309 37 100.0 45 ..................................... CATTTCGTTCAGCGTCTTTTCTAAATCACTCGACTTTACATATCT 2709227 37 100.0 36 ..................................... TTTAAGAATAACAACGGCACTTTCACATAGTTCAGG 2709154 37 100.0 37 ..................................... CCCCTCTTTCCAGGTTCCGTTTTTAATAGCCTTTAAA 2709080 37 100.0 41 ..................................... TCAGTATCGGCGACATCCTCCTTGTTCGCAAATTCTTTATT 2709002 37 100.0 35 ..................................... GGTTTTATATCTTTGAAAGCACTTTCAGTTGCTTT 2708930 37 100.0 37 ..................................... TCATTTACCCACTGCATGCGGCAATGGCTCATAGGCA 2708856 37 100.0 38 ..................................... TAAAAGGCCGCAGACCAATCCTCGGGCATTATTTCTTT 2708781 37 100.0 37 ..................................... TCATTTACCCACTGCATGCGGCAATGGCTCATAGGCA 2708707 37 100.0 37 ..................................... AGTGATAGAATACTATTGTTTTTTGTGAAGAGAGGAA 2708633 37 100.0 35 ..................................... CCACAACAAATTTTCGTATGCTTTTCTAGACGAGA 2708561 37 100.0 34 ..................................... AACATAAACGAGATAAGAGAAATAAGAGCCCCAC 2708490 37 100.0 38 ..................................... GATATAGCCCCAGTTTTTCTCAGTATCCTCATTGAACA 2708415 37 100.0 35 ..................................... AAAATCTCCGCAAATTACTACTATACCATCAGATT 2708343 37 100.0 34 ..................................... CGTTTTACGCATTTGAAAGACAAAAATCTTCAAA 2708272 37 100.0 39 ..................................... TTGTTGCCATCTCTTCCTTTAATTTCCGGGATTTTTTAG 2708196 37 100.0 41 ..................................... AGAATTGGGCAAGTATAATAGAGCAATACCACAATTAGTAT 2708118 37 100.0 37 ..................................... TATTTCATAGAAATCATATGTTCCTAAGGTATGAACA 2708044 37 100.0 37 ..................................... AAAGTCACCCCCTTCACCTTTACAGTGTGTATATCCT 2707970 37 97.3 38 ...A................................. TAATCCGCTTGCATTGATAGTAACTCTTATCCGATATT 2707895 37 100.0 35 ..................................... CCCTGAAGCATCTTTCTAGGAAAGCTAGAATCAGC 2707823 37 100.0 39 ..................................... GTTTGGTTTGGAAACTTTGTCATTAGCTAACTCCTTATA 2707747 37 100.0 36 ..................................... AATACTTCTGGAAGATCTGTTGCCTTTTGCAAATCT 2707674 37 100.0 38 ..................................... TCTCAGCCCGAAATGTGATGCTGTTATTCCTTTCAATA 2707599 37 100.0 34 ..................................... TCTATTTCTCGAATCCAAAGATATGGCCCCGATA 2707528 37 100.0 35 ..................................... CCAATAGATCAATCTCAGGATCATAGCCCTCACTG 2707456 37 100.0 36 ..................................... CGGGCAATAAACGCGGAAGTCATTGCTTCGTCTCTG 2707383 37 100.0 36 ..................................... CATCTCTGCTCCACAGAATGCGCACTCTTTCACTTT 2707310 37 100.0 36 ..................................... AATTTTTTGGTAGAAGGCTTCTTCATCCATGGCAAG 2707237 37 100.0 36 ..................................... CTTACAATCTTACAGTCCTTCCAACCCCATCCGATA 2707164 37 100.0 37 ..................................... AAAATCTTCCATAGATTTTCCAGCTTTAGAATCTCCG 2707090 37 100.0 37 ..................................... CCTTTTATTGTTAAGATACAATTTCCGTCTTCAGATG 2707016 37 100.0 38 ..................................... ATTTGGATGATTTTGCATCCATATTTCCCAGTCATCAG 2706941 37 100.0 35 ..................................... ATATTTTTCATCCATGATGTGAAGCGGAATAGGAG 2706869 37 100.0 41 ..................................... TGCAACTTATCCTCTGGATCCCTCACTGTGAGACCAAAGCT 2706791 37 100.0 36 ..................................... CTGAGATAGTCACCAGTTCCTTTAAACCCTTCCTTA 2706718 37 100.0 39 ..................................... CAGATCTTCTTCGCGCGTTCTTTTTTGTATTTTTTAAAA 2706642 37 100.0 37 ..................................... TCAAAAACGTTTATTGCCTCATGTCTTCCTGTAAAGT 2706568 37 100.0 36 ..................................... ACCACACCATAATCAGGACGCCCTTTTATTTTCCCT 2706495 37 100.0 35 ..................................... CTACCACCACATACCGGACAAGCTATCGTACCACC 2706423 37 100.0 33 ..................................... TATCAGTGTTTGCAGCTTAGGTGTTCGGATAAA 2706353 37 100.0 37 ..................................... GATAATCTCTGTGATCTGTGTCGTATTTCCTCCGCTG 2706279 37 100.0 37 ..................................... TTGTTTTGTACGACAGAATAAGCTCTTGCATTATACA 2706205 37 100.0 36 ..................................... TAGAGAAGTCTCTCCTGCGTCGAGTCTGTTTAAAAA 2706132 37 100.0 38 ..................................... GTTGTTATCAATGATATTTTCGATAGCTGCACATTCCT 2706057 37 100.0 35 ..................................... TTTATTCGCTTAACCTATTTTTTTCTTCTGGAAAA 2705985 37 100.0 38 ..................................... TCACCAAACCCGCCACCAGACCATCGCGGACATCCACA 2705910 37 100.0 39 ..................................... TTAAGGATAACGGATAGTTACCGTATTCAAGCTCTTGTA 2705834 37 100.0 36 ..................................... CTTTCTTCAATTATCATTTTTACTCACCTTCCTCTA 2705761 37 100.0 38 ..................................... TGTGCTGCCCATACTATTTTACTATTGGATATTTCCGG 2705686 37 100.0 36 ..................................... TTTTTTACGATGACCCGATACCCCAAACATATCTGA 2705613 37 97.3 37 ...........T......................... AGCTACTCCATTTGAGTTCGAGCAATCGCTAAAAAAC 2705539 37 100.0 37 ..................................... CGATTATAATTTTTGCGGTATAGACAACCACATCACA 2705465 37 100.0 38 ..................................... TGTATTGGGAAGCATCTCTTATCTTTGCTGATATATAT 2705390 37 100.0 35 ..................................... ACTTTTGTTTTTGCAAAAATGTCTTTCGTTATCCA 2705318 37 100.0 43 ..................................... TTTATAGCCTTCATCCATGATACAAACCGGCATAGTAGCAGCA 2705238 37 97.3 37 ...........T......................... TTTGGTCCTAGCTCGACCAGTTCTTCGGCTTTTTCCA 2705164 37 100.0 38 ..................................... TTTCGGCTCAGTAGATTTTAAATTCAGACAGATCTGTT 2705089 37 100.0 37 ..................................... TTTTCTCATCTTTTATAACCTCGATTTTTATGTGTTT 2705015 37 78.4 33 A.C..G...T........CT........A......G. AAGATTCTGATTGCATTATGATCCTGTAATATA 2704945 37 70.3 0 ....C....TG.T......T.....T.TT.A..G..G | G [2704918] ========== ====== ====== ====== ===================================== ================================================ ================== 75 37 99.2 37 GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Left flank : TTCTTCTTTATGCCATCCCGTGCAGATATAGCGTCTTTCGATCAATTCGACGGGGAATCGAACCAATGGCTTCTGAATGCGATTAATCTTCATGAAATAAATTATAGTGCAGGTGAATTCAAAAAATATTCCACGGTACTGTAGTCATTAAGGCATCATCTGGAAAACTCTTCTAAAAATGTTGTCAATTTCCAGTTTCCGAACCCTTAAGGTCCAAAATTCAGTTTAATCATCAATAGGCTTGAATGTACACAAAATAAGCAAGTTGATTTCCGCTGATCTACCCCAAGTTCCTAAAGAAATTCACCCCAATGTACATTAATATACATTATTAAAATATAATATCAACGTCAAGCAGTTCATTTTCGAAAAATTAATATACCGCTGATCTTTATATACCCTAGTGTAACAGGGAGATCAGCGGAAAATGCCTAAATGGGTATGCGGAAAAAATTGCTCTATTTTGAAAATAAAGGCTTAATAGGGCGTTTTGAAACCCT # Right flank : AATCTATATATTCAATTCAATTCTATTATTTTTTATTATATAATTATATTTTTATAAAAAAGCACCACAATTTCCACAAATTTATATACTATTCTGATTCAGGTAGAGCTAATGGCAAAGATGTCTGAGAAGGAATACTACTTAGCTTACATAGATATTCTGGGTTTTGACAAACTAGCGCAGGAGATTTCGGAAGAAAGCAATCTTTCATCTGATTTCGTAAGGAAAATCTTTGTTAAGACTATTGAAGAAAAAATGTGCACACTCAAAGAACAAAAAAGAATTCTAACTTACCAAAAACACTCAGGAGATTCTTGGATTCTTATCTCTGATAGACTTTCAAATTTGTTCAGGAACATTTATGAAATATTAGATGTTCAATTGCCATTTAAAAATCACAAACATCTCCAATTTGAAATCGGGTTGGGAAAAGGAATTTTCGGAGACCAAGTTGAATTTGATAAAGAAGATGTAGTCAACAAAAATGATACAATTAACTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [93.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 3 2719925-2718699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2719924 37 100.0 36 ..................................... AGTATTGTTCGTTTTTTAGTTGGATTTTTTTGGAGT 2719851 37 100.0 46 ..................................... TATTATATTTTTTGTTATCTATAATCGCCTGTAAGGAAGCGATACA 2719768 37 100.0 37 ..................................... CCTTCTTACGGCTATAAAAACAAAACTGCTATCTGTT 2719694 37 100.0 37 ..................................... TTCTGCCTGATAAAAACAACAAAAATAGAAACTGAAA 2719620 37 100.0 36 ..................................... CACCTCCTTCTTCAGAGTATTTAAAATTATTCCCAA 2719547 37 100.0 36 ..................................... TCGTTTCTGATCTGCTTCGCGAATTTGCTAACGCTG 2719474 37 100.0 36 ..................................... TGCCTTCCTGTTTCGGATAAACATTGTTTTCAGAGA 2719401 37 100.0 37 ..................................... TCTTCGATAACGACATATCCCTGTCGAGCACCTTCAA 2719327 37 100.0 35 ..................................... ACTAGTGCTAGTGGGGGTAACTTCATTTTATTCCT 2719255 37 100.0 38 ..................................... AATGCCTCTAGCAACTTGTGCTTGAGATGTCGTATAAG 2719180 37 100.0 36 ..................................... CCCTACACGTTTAAGCATTTGCAAAACTCCTTTTAT 2719107 37 100.0 37 ..................................... TGGGCTCCCTCCGATTGTACTTGTTTCGTCTTTCGCG 2719033 37 100.0 40 ..................................... CTCTCTGGTCAAGATAATTCGATATTCCTTAACAGAAGAA 2718956 37 100.0 35 ..................................... TCGATAATTGGAACATATGCTTTTTTCATTTCTTC 2718884 37 100.0 40 ..................................... CTCTCTGGTCAAGATAATTCGATATTCCTTAACAGAAGAA 2718807 37 100.0 35 ..................................... AACTCCTGTCTTGATTTTTCACTTGCTTTCATCGC 2718735 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 17 37 100.0 37 GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Left flank : TTCTTCTTTATGCCATCCCGTGCAGATATAGCGTCTTTCGATCAATTCGATGGGGAATCGAACCAATGGCTTCTGAATGCGATTATTCTTCACAAAATAAATTGTAGTGCAGGTGAATTCAAAAAATATTTCACGGTACTGCGGTCATTAAGGTGTCATCTGGTAAACTCTTCTAAAAATGTTGTTAATTTCCAGTTTCCGAACCCTCAAGGTACGAAATTCGGTTTAATTATCAATAGGCATGAATGTACACAAAATAAGCAAGTTGATTTCCGCTGATCTACCCCAAGTTCCTAAAGAAATTCACCCCAATGTACATTAATATACATTATTAAAATATAATATCAACATCAAGTAGTTCATTTTCGAAAAATTAATATACCGCTGATCTTTATATACCTTAGTGTAACAGGGAGATCAGCGGAAAATGCCTAAATGGGTATGCGGAAAAAATTGCTCTATTTTGAAAATAAAGGCTTAATAGGGCGTTTTGAAACCCT # Right flank : ATTGTCTCTTTTTTATACTGATAAAACTGAAATTCAGTCTGAGAATTCGCGAGCAAGATCCCCTAAAACAAGGATTGAAACATTTCACAGTTAAAAAGATAAATCGCCCATTCGATGTCGAGAAGTCGTTTCCCCAAAAAAGGGTTGAAACATGAATCTTTCGCTTTTGTACATGTAATCAGAAAACATAAGTATTCGTAGATACAAATAAAGTACTAACTAATAACTATTTATTATGTAATCGTTGCAAATCTACGGAAGTGAAGAAATGACAGAGGCATTAAATTCTGATAAGGTAAAACCTTCTCCGACTCTCAACACTATTATTATGGTAGAAGATACTATACAAAATTGCCCGAATAGCGTGATAACTATTGCGGAGCTCAAAAAAGCACTTCCACGACAGGTAAACCACAATACTTTAATGACGATTTTGGAATATCTGGAGAAAAGTAGTAAAATTGTTGTGGGTTTAAGAGGAATAACCTGGATTCACAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 4 2722227-2720505 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2722226 37 100.0 36 ..................................... TTTTTGGCTCCGAGCCACACATCACCGCTAGATTGA 2722153 37 100.0 35 ..................................... ACCCCCCCGTATATCTTCCCTTTTGCTGTATCCAC 2722081 37 100.0 36 ..................................... ATAGCATTCGGTTCGATTTCGGGTTTATCGAAATTG 2722008 37 100.0 38 ..................................... ATTTCTTGATACTGTTGCACTGTACCCCGATGAATTTG 2721933 37 100.0 36 ..................................... TGTAAGAGATGATGCTGCAGGTATCTATCGTTATGT 2721860 37 100.0 37 ..................................... TCCTCAATAATATACTCCATAACAACCACCGCCACAT 2721786 37 100.0 35 ..................................... TAGTTTGTTGTAACTATAAATACTAACAACACGGA 2721714 37 100.0 35 ..................................... TAGTTTGTTGTAACTATAAATACTAACAACACGGA 2721642 37 100.0 37 ..................................... TCAAATGGCATTTTTTCATTGAGAATGCTTCTTAATT 2721568 37 97.3 38 .....T............................... TAGGTTGTTGGTAATTCTGTGTATTTGAAGATTATATG 2721493 37 100.0 37 ..................................... ATAACAGGAATTGCTCTATTAACTTGTGGTGTGCTTG 2721419 37 100.0 35 ..................................... CTGCCTTTTGCAACTCCTTTTGTGTACTTTGCAAC 2721347 37 100.0 36 ..................................... TCTGCTCAACATCGTATCTTAAAAGAGGTACTTCAG 2721274 37 100.0 36 ..................................... TCTGCTCAACATCGTATCTTAAAAGAGGTACTTCAG 2721201 37 100.0 35 ..................................... TATATGTCATTGCCTCGCCGTTCGGTGATCTTCCA 2721129 37 100.0 37 ..................................... CACCATGCCGTTTTTCGTCCATTCTTGATTGGGAACT 2721055 37 100.0 36 ..................................... ATTGTCCTGTTTTTTCTTTCTTCTTCTCTTGTTTTT 2720982 37 100.0 37 ..................................... GTTCTGACTTCATTTTATCACCTACTATAGTAATAGG 2720908 37 100.0 37 ..................................... TAGACCTGTCCACAGGATTGAAAGTTGCCTTAAGATA 2720834 37 100.0 35 ..................................... CCCTTAGACGCTTTGTCATACTCAGCCTGCCATTT 2720762 37 100.0 36 ..................................... TTTACATTTGCTGCCTGCCTCTCGTCTAATTGGAGA 2720689 37 100.0 36 ..................................... TTCCGGAAACACTGTAAAAAGGAGTGGGCATGATGG 2720616 37 100.0 37 ..................................... TAAATCAATATTTCATAATCAATTTCATACATAATAT 2720542 37 97.3 0 ....................................T | G [2720507] ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 99.8 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GAGCAAGATCCACTAAAACAAGGATTGAAACTGTTGGAAGTGTTTAAATGACTATCCATATCATAAACCATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACTCAACATCTTTTGAAAATGATTCATATGCATTTGCCAATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACTTTCACCTTCTTGTGGTTCTTGAGATGCAATTAGTATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACCTTCAGACTGGGGTACTCCCCAACCGTTCACGTTTTTATTTTCAGTCGAATACCCCGCTAGCTTGCTGCGGGGATGAAAAACTTCCCCGGCAACCGTTAATAATAATATGATTTATCAATTCAATTTTTTGGTTGTTAACTCCTGCTCAAACTAAAGTGTTTATGGTTATTGTTTTCTTTAACGGAATTTGGAGCGGTGGCGCGAACATACCCCGTTGCTTGCGGCGGGGTGCGCCAGCGCAACTTTG # Right flank : TCCCGATGTTTCTGGGATTTTCGGAATCATCAATCACACTCGCATCCAGGTATTCCTCCTTTTAGAAAATCCTTCCTTAATTCTTCTTTATGCCATCCCGTGCAGATATAGCGTCTTTCGATCAATTCGATGGGGAATCGAACCAATGGCTTCTGAATGCGATTATTCTTCACAAAATAAATTGTAGTGCAGGTGAATTCAAAAAATATTTCACGGTACTGCGGTCATTAAGGTGTCATCTGGTAAACTCTTCTAAAAATGTTGTTAATTTCCAGTTTCCGAACCCTCAAGGTACGAAATTCGGTTTAATTATCAATAGGCATGAATGTACACAAAATAAGCAAGTTGATTTCCGCTGATCTACCCCAAGTTCCTAAAGAAATTCACCCCAATGTACATTAATATACATTATTAAAATATAATATCAACATCAAGTAGTTCATTTTCGAAAAATTAATATACCGCTGATCTTTATATACCTTAGTGTAACAGGGAGATCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 5 2723823-2722475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2723822 37 100.0 36 ..................................... GTAGATAAAATATTACAGGAAAGATATTATCAAGAA 2723749 37 100.0 35 ..................................... CGAAGGAATCACAGTAGACAGATACGGAGGAATAA 2723677 37 100.0 33 ..................................... CAATTTGAAATCTCTTCTCCAACATTCATTATT 2723607 37 100.0 36 ..................................... ATAAAAAATTCCTGCCTAATTCCCCCACACTAATGA 2723534 37 100.0 36 ..................................... TGGGAATGAAATATTTATATCAGTGTCCGAATTGTA 2723461 37 100.0 35 ..................................... TCATTTGTTTTTTAAGTTCAAATCATTTGTATAAT 2723389 37 100.0 35 ..................................... TCCTCATCATCTTGGGACAATATGTAATCTTCAAA 2723317 37 100.0 37 ..................................... AACGCTAGTTCTACTAATTTATCACAGTTCATGCTTC 2723243 37 100.0 36 ..................................... ACAAGTGAATATGGTCTTTGTCAGTTTCCATTTCTA 2723170 37 100.0 34 ..................................... CGCTATAACTCGTAGGGTAATCACCATACACACC 2723099 37 100.0 38 ..................................... GATAGAGTACTTCTTTACATAAGAAATTTTTTAAATAA 2723024 37 100.0 36 ..................................... GAAATCTCGCTTCTGTTTCTGCGAATACAAATCCAC 2722951 37 100.0 34 ..................................... ACCTGTGATTCGTTCCAGGATAATAGGTATCCAA 2722880 37 100.0 37 ..................................... CATACGGGACTGTATAGTCTATGTCATTATACCGGCC 2722806 37 100.0 37 ..................................... CAAAACAAGAACCTCCCACTCGTAGTCCGAAACGGAT 2722732 37 100.0 38 ..................................... TGTTGGAAGTGTTTAAATGACTATCCATATCATAAACC 2722657 37 100.0 37 ..................................... TCAACATCTTTTGAAAATGATTCATATGCATTTGCCA 2722583 37 100.0 35 ..................................... TTTCACCTTCTTGTGGTTCTTGAGATGCAATTAGT 2722511 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 100.0 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTCCATATTGAATTCGTCCTCATCCCATAGTTCCATCTCATAAATGAGCCAGGTTCCTGTGAAGTCCATATCGTTGACTTTGTTTTCTTGCATGATGAGTATGCTATGCAATATTATGAATTTGAAGTTTTCTGAGATCCAGTGAAACAGGGATTGAAATCTGGCTGTACAATTTCAGTGATTTGCTTTGTGATATTTGCGAGCAGGATTCATTAAAACAAAAATTGAAACTATATGCTATTGAAACAAGTTACGTGCACACCAATATTGACCACGAAAGTACCTGAATTAGAAATCTACTTTAACAGTTTTAAAAACAAAAGTTTAATAGGAAGAAAAGCATATGTCCAGATGTTTCCAAACCATCTGTTTCCAAACCATCAAAAACCCTGATTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTTACCCCAAAAAAGGGCTCATTTTAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : CTTCAGACTGGGGTACTCCCCAACCGTTCACGTTTTTATTTTCAGTCGAATACCCCGCTAGCTTGCTGCGGGGATGAAAAACTTCCCCGGCAACCGTTAATAATAATATGATTTATCAATTCAATTTTTTGGTTGTTAACTCCTGCTCAAACTAAAGTGTTTATGGTTATTGTTTTCTTTAACGGAATTTGGAGCGGTGGCGCGAACATACCCCGTTGCTTGCGGCGGGGTGCGCCAGCGCAACTTTGATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACTTTTTGGCTCCGAGCCACACATCACCGCTAGATTGAATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACACCCCCCCGTATATCTTCCCTTTTGCTGTATCCACATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACATAGCATTCGGTTCGATTTCGGGTTTATCGAAATTGATTCGCGAGCAAGATCCACTAAAACAAGGATTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 6 2980927-2983739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2980927 37 100.0 34 ..................................... CAGCAGGAACAGCTCCACTAACTATACAATTCAC 2980998 37 100.0 37 ..................................... AGGAAATAATCATCAGGGATAAATACTCAAAGAATTT 2981072 37 100.0 37 ..................................... CAGATCTTGCCGGGAATAAAAGGTTAAGCTCTTCACT 2981146 37 100.0 42 ..................................... ATAGTATTCTTGCACTGCCTGGGATAGTAGACTCTATCGAAA 2981225 37 100.0 35 ..................................... CAGTCGTTTCTTTTTCATCTTCGGTATAAGTTCCT 2981297 37 100.0 35 ..................................... CCCACCCGGTAGTTGCATCGCACGCATCAATCACT 2981369 37 100.0 37 ..................................... CAGTTACGGTAGAGTTAGGCGCGGATCTTTTAACGGC 2981443 37 100.0 37 ..................................... AATTCAATGATTGAAGATGGATGGGTGGACTGAATGG 2981517 37 100.0 37 ..................................... ACTCAGCAAGTCTCTATAGAGAGAGAGAGTATTTTTT 2981591 37 100.0 36 ..................................... ATATCGCATTGATCTTTGTACTCTCGTCAGGTGTTA 2981664 37 100.0 34 ..................................... TTCCCCCGTTTCGTGAATATGAGCCCGTTTCGAT 2981735 37 100.0 35 ..................................... CATTTCCAGCACCAAGAGTAAATGGTCTGATAACT 2981807 37 100.0 34 ..................................... ATTTGTCCTGATCAGTCTCAGCCTTCCGAGCAGT 2981878 37 100.0 35 ..................................... GGCCACTGTTAGATTCAGTACTAATTAATCCAAGT 2981950 37 100.0 36 ..................................... GTCTGTGTAAAGACTCTTTTCGTTTTGCAAGATATC 2982023 37 100.0 36 ..................................... TAAGCAATGAGTACATAATAAGAGTACAAGCAGGGC 2982096 37 100.0 37 ..................................... CAGAATAAGGATGTACTGTCTCCAGATTACATCCCAT 2982170 37 100.0 35 ..................................... GTTTCATATCCTGATACTTTGATCTGTCCGGTTTT 2982242 37 100.0 36 ..................................... TCCTGGTTCCATTTTGAGTGATACCCGAATGTGAGG 2982315 37 100.0 36 ..................................... TGCAAACTTACAGCATGGCTCCGGAATCAAAGAAGA 2982388 37 100.0 37 ..................................... TGAATTCTCCGAGCGTCATTGATTTTGGATTTTTAAT 2982462 37 100.0 37 ..................................... ATGCGAATTTTCGGGTTCTGAAATCAAGCGACTCGAA 2982536 37 100.0 33 ..................................... TTCCTCCAATTACCTATATTCTTCAGGAAGCCC 2982606 37 100.0 35 ..................................... TGAAAACATGCCAACAGCCGAAGATAACGCACACG 2982678 37 100.0 37 ..................................... AGACAACATCCCTGCCATTCAATACAGTATTTCTAAG 2982752 37 100.0 36 ..................................... ATTAAAAACGAACTTGCCCGCGCTCATGATCTCATT 2982825 37 100.0 35 ..................................... AAAACAAGATAAGTCGTCAATTTCATGAACGGAAA 2982897 37 100.0 37 ..................................... TGCAACCGGCCCGGATCAGGATCTTAAGCCGGTTGAG 2982971 37 100.0 36 ..................................... CAGGATCAAAAATGAGAGGGGAGTACATTATTTGCC 2983044 37 100.0 36 ..................................... ATCGGGATCGGTACATCAAACTTAACGGGATTTTTC 2983117 37 100.0 37 ..................................... ATCGGGATCGGTACATCAAACTTAACGGGATTTTTCA 2983191 37 100.0 37 ..................................... TCAATTTCGTTTTTTCTAATGTCTGCCATTTTTACAC 2983265 37 100.0 35 ..................................... TGGAAATGTTGGCAGGATGGATTGAATGTGTTTTC 2983337 37 100.0 37 ..................................... TAATATTAGTTCTTATAATAATGTACATCAATGTTGC 2983411 37 100.0 36 ..................................... TCCTGATATTCCCCTGTGCGAATCTCCCACTTTCCC 2983484 37 100.0 36 ..................................... TTTACTGTATATGCTACTGCAGATACACGTATATAA 2983557 37 100.0 36 ..................................... ATAACAACGCGTGTCAGTGGTTCGTCTTCGATGTCG 2983630 37 97.3 36 ....................................T GTTGCAATGCCTGCAGCATTCACTATTGCTACAAAT 2983703 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 39 37 99.9 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGAGAGTGAAGTATTCATTGCTTCAAAACAGCATCATATAAAAGGAATAGTTGACGAGGTGCTGTTTCTTGAAGACGGAACTGCTGCTCCTCTTGAATACAAATTTGCCGAGTATAAAGACAAGATTTTTAAAACCTATAAATTCCAGCTGGTCTTGCAGGCACTTTTGATCCGTGAAAATTACAATATTGAAGTAAACCGTGCATACCTCTGTTTTACCCGAAGCAACAGCATGGTCAAAGAAATGGAGATCAGCGCATCGGATTTAAAAAAAGCTGAAAAAATAATCGAGGAAATTATCGATATAATTCAAAAAGGTTTATATCCTAAGACAACCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGATGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTTAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : CTCGTAAAAACTGTGCATAGCCTCCTGATACTGATTATGGAGTACATTTATTTTTTCAGATTTATTCAAAAAAGTTCTTATGTTAAAAAGTCCTCTATACCCTGTACGAAATATATTAGGAGATATTTTAATGTATAAGATATTGGAAACCAAATTAGCAAGTGGCGAAATTCTATTGTTCGGAGAATGGAAAGAGGATCAATCAGGATATAATGACGAAGTAACTACAACACATATACTCAAAGTCTCATCAAAAGACCATATTACATTACATGAAACAAGTGAGTATTTTTCATGTGCTCCCAAAAACGGAGGAAGAAGTAAAACAGAAAAGACATTCACAATTTCAATAGAAAAATTAAAAACCTTAATCAAAGAAAATTGTGAAACACAAAACGTTTCTTACAAGCACCCTTAAAATGGGAAGATAGTATTTTTTCAGATGTATTTAAAAAAGTTCTTATGTTAGAAAGATATATAATCCGCATGAAAGAAAAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 7 2984293-2984767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2984293 37 100.0 38 ..................................... ATTCTCTCAGGCAGTGTTATGTTTGCATTAACTGCTGT 2984368 37 100.0 37 ..................................... TACCCACCCTGTTTCCATTCATTCTTCTTCGGTGGCT 2984442 37 100.0 36 ..................................... AGATATTTGATAAGTAACTCGTTTTCGGTGAGGTAC 2984515 37 100.0 36 ..................................... TTCCGGAAACACTGTAAAAAGGAGTGGGCATGATGG 2984588 37 100.0 33 ..................................... CAACATATTAACAGGCTGCCCATCTTCCAGCAA 2984658 37 100.0 35 ..................................... TATAAATCAGAATGTTTTATGTATAAACTAGACTT 2984730 37 97.3 0 ....................................T | G [2984764] ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 99.6 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTCAGATTTATTCAAAAAAGTTCTTATGTTAAAAAGTCCTCTATACCCTGTACGAAATATATTAGGAGATATTTTAATGTATAAGATATTGGAAACCAAATTAGCAAGTGGCGAAATTCTATTGTTCGGAGAATGGAAAGAGGATCAATCAGGATATAATGACGAAGTAACTACAACACATATACTCAAAGTCTCATCAAAAGACCATATTACATTACATGAAACAAGTGAGTATTTTTCATGTGCTCCCAAAAACGGAGGAAGAAGTAAAACAGAAAAGACATTCACAATTTCAATAGAAAAATTAAAAACCTTAATCAAAGAAAATTGTGAAACACAAAACGTTTCTTACAAGCACCCTTAAAATGGGAAGATAGTATTTTTTCAGATGTATTTAAAAAAGTTCTTATGTTAGAAAGATATATAATCCGCATGAAAGAAAAACGAAGTCTGGATGGAATATACTTTAGGGTACAAAGAGGCGATTGGACAAATATCTG # Right flank : TTCCCGATGGTTCTGAGATTTTCGGAATCTTCAATCACACTCGCATCCAGGTATTCACCCTTCGGGAAAATCCGTCCTTGAATCTGCTTTATACCTTACTGTGTAAATTTGGTGTCTTCCGGTCAATTAGACGAGTAATAGAACCAATGGCTCCTGAGTACGATTATTATTAATAAAATAAATTATCGTGTTGATGAATTCAAAAAATATTCCACGGTACTGCGGTCATTAAGGTGTCATCTGGAAAACTCTTCTAAAAATGTTGTCAATTTCCAGTTTCCGAACCCTCAAGGTACGAAATTCAGTTTAATAATCAATAGGCTTGAATGCACATAAAATAAGCAAGTTGATTTCCGCTGATCTACCCCAAGTTCCTAAAGAAATTCACCCCAATGTACATTAATATACATTATTAAAATATAATATCAACACCAAGCGGTTCATTTTCGAAAAATTAATATACCGCTGATCTTTATATACCCTAGTGTAACAGGGAGATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 8 2985348-2986527 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2985348 37 100.0 41 ..................................... CTTATTATCTTTCCTGCGAAAGATTCTATATAATTGTCCTC 2985426 37 100.0 41 ..................................... TTTTTGTTGATTATTGGCACGATTAATCCTCCTGATTTCAA 2985504 37 100.0 35 ..................................... TCATCGCCTGTGTTGTCATCAACAACGTCGTCATC 2985576 37 100.0 42 ..................................... TTCATCTATTGTCAAAGGATATTCTCCCGTTTCTTTTGTTTA 2985655 37 100.0 36 ..................................... TCCAACCAAAGAGCAACTTCGTTACGTTCAACCTTA 2985728 37 100.0 37 ..................................... TCGAAAATCCACTCTTGGTGGGGTTCGTTTCTCTTAA 2985802 37 100.0 37 ..................................... TTTTTTTCGCAAAGCCAGAACCAACAAGCCTGACCGA 2985876 37 100.0 35 ..................................... TATCTGCGCCGTCTGTTAGCATTTTAGCGACTGTA 2985948 37 100.0 36 ..................................... ATTCTATACTTTCTTCGAAAAATCCATATATTAACA 2986021 37 97.3 1 ....................................A G Deletion [2986059] 2986050 37 94.6 29 A...................................A ACAGGAACCCAGTCTTCTGGATTTTCCTC 2986123 37 100.0 38 ..................................... AAGAAGTCTGTGGATCTTTATCGAGTTGGGATTCCGGC 2986198 37 100.0 38 ..................................... TTTCCTCTTTTTGCACAATTTCCCTAGCGTCTGTGAAA 2986273 37 100.0 35 ..................................... CTTGTCCAATCACCGCTTTAGCTTTCTCGATACCC 2986345 37 100.0 36 ..................................... ATTCTCCGTTGTATCGCTACAACGGTCGAAGCTATA 2986418 37 100.0 36 ..................................... TGCAGTCAACCCGAATGGTCATTGCTGTTCCAAATA 2986491 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 99.5 35 GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Left flank : ATCTGCTTTATACCTTACTGTGTAAATTTGGTGTCTTCCGGTCAATTAGACGAGTAATAGAACCAATGGCTCCTGAGTACGATTATTATTAATAAAATAAATTATCGTGTTGATGAATTCAAAAAATATTCCACGGTACTGCGGTCATTAAGGTGTCATCTGGAAAACTCTTCTAAAAATGTTGTCAATTTCCAGTTTCCGAACCCTCAAGGTACGAAATTCAGTTTAATAATCAATAGGCTTGAATGCACATAAAATAAGCAAGTTGATTTCCGCTGATCTACCCCAAGTTCCTAAAGAAATTCACCCCAATGTACATTAATATACATTATTAAAATATAATATCAACACCAAGCGGTTCATTTTCGAAAAATTAATATACCGCTGATCTTTATATACCCTAGTGTAACAGGGAGATCAGCGGAAAATGCCTAAATGGGTATGCGGAAAAAATTGCTCTATTTTGAAAATAAAGGCTTAATAGGGCGTTTTGAAACCCT # Right flank : CACCAGTTAACCGCCCGAGACTTCGAAGCAATGAAGGCATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACAATGCCGCATTTGATCGCACATGATCTCCCACACTAAATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACAAAACATAGCTTTTTTTGCATTGTGACCAAAGAAGCATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACAAACAAATCGGTTGTATACTAGCATTGTGTATGATGTATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACATTTTCGTCTTGCGTTTTCTACGTTGAGACTAGCTTATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACAGCGTCCTTACCTTGTACATTCTGCGCCTCTCCTATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACTAGTAAGAGAAAGGGCTGATGGTCGTGGAGGACTCAGATTCGCGAGCAAGATCCACTAAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 9 2986565-2988432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2986565 37 100.0 37 ..................................... AATGCCGCATTTGATCGCACATGATCTCCCACACTAA 2986639 37 100.0 36 ..................................... AAAACATAGCTTTTTTTGCATTGTGACCAAAGAAGC 2986712 37 100.0 37 ..................................... AAACAAATCGGTTGTATACTAGCATTGTGTATGATGT 2986786 37 100.0 36 ..................................... ATTTTCGTCTTGCGTTTTCTACGTTGAGACTAGCTT 2986859 37 100.0 34 ..................................... AGCGTCCTTACCTTGTACATTCTGCGCCTCTCCT 2986930 37 100.0 37 ..................................... TAGTAAGAGAAAGGGCTGATGGTCGTGGAGGACTCAG 2987004 37 100.0 37 ..................................... AAAATATGGCTACACCGATAGGTTTTAACGAACACGG 2987078 37 100.0 36 ..................................... TAAGATAGGAACGTTCCACAAAGCGGAGATATAATA 2987151 37 100.0 36 ..................................... CTGTCTCCTGCGAGTCCTTCGTCTTTTGGGTCCTTA 2987224 37 100.0 36 ..................................... CTTCTTGTTCTCTATATTTTTCAAAAGTGTCTTGTA 2987297 37 100.0 36 ..................................... TAATCTCAATTAGTTGTTCATCAGAAAGAGTATTAA 2987370 37 100.0 36 ..................................... TACAGTGTCTTGCCATCGATTCTTATCTGTTTGGTT 2987443 37 100.0 35 ..................................... ACTCACTGACTCCACATTAAACAATCAAAAAAGAG 2987515 37 100.0 36 ..................................... TAGCTCCTGTAATCTTCTGTAGCCAGGTAGTTTCTG 2987588 37 100.0 38 ..................................... AACAGTTAAGTGCGCGACCTCGTCTTTTCGCCGTACTG 2987663 37 100.0 37 ..................................... CCACCGATAAACCCGCCAATAACTCCGCCTGCCGCGC 2987737 37 100.0 36 ..................................... CACCTTCAGCCCTGAGGCCTCTCTAACAAAAGATTA 2987810 37 100.0 36 ..................................... AGAGGGAGGGGGTAAATTATGATAAACACCAACAAC 2987883 37 100.0 35 ..................................... CTCACTTTTTATCTTTGAAAAGATATACATCTATT 2987955 37 100.0 36 ..................................... TTTCTAATTCTTTCAAAAACAATTTCATATTTCTTT 2988028 37 100.0 36 ..................................... TAATATCCAATTGTTTGTTCAAGGTCTGAAATTAGT 2988101 37 100.0 36 ..................................... ATAATTTCATTTCGGGAGGGGCAACCTTATTTGGAT 2988174 37 100.0 36 ..................................... GTTTTCTTCTCTATGTGGTCCTGGTGGCTCCTATTT 2988247 37 100.0 37 ..................................... AATTTCATCGGAGTTAAATGTCAATTTAGGCATTAGT 2988321 37 100.0 36 ..................................... CATATCTTTTCAATCATTTGGGGCACGTTTTCCATG 2988394 37 91.9 0 .............................G..A...A | T,A [2988423,2988426] ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.7 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCAGCAAAACAAGGATTGAAAAACAGGAACCCAGTCTTCTGGATTTTCCTCTCCTATAGTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAACAAGAAGTCTGTGGATCTTTATCGAGTTGGGATTCCGGCGTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAACTTTCCTCTTTTTGCACAATTTCCCTAGCGTCTGTGAAAGTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAACCTTGTCCAATCACCGCTTTAGCTTTCTCGATACCCGTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAACATTCTCCGTTGTATCGCTACAACGGTCGAAGCTATAGTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAACTGCAGTCAACCCGAATGGTCATTGCTGTTCCAAATAGTTGAAAAACAGCTTCCAGCAAAACAAGGATTGAAACACCAGTTAACCGCCCGAGACTTCGAAGCAATGAAGGC # Right flank : ACATTTTAAAAATACTCTTTACGCGAGAAATATGGCCGGGAAGATCACCTACCTTGATGGGCTGCGCGGTATAGCTGCGGTTAATGTTATGATAATGCACTTCTTTGTCGCATTAGCCCCGGCGATGATCTATGGAAGCAAGTTGCCATCACATTTCGGAAACCTTGACCTACTTTTTTCGAGCACACCCCTGGGATTAATTGGCGCCGGCAACTTTTCAGTGTGCATCTTCTTCGTCCTGAGCGGCTACGTATTAACCCAAAAATACTTTAAAACGAAGGAAAACAGCATAATTATAAGCAGCGCAGTGCGTCGATATCTAAGGTTGTTTATTCCGGTATTCGCAGCAGTAATGATCTCATACTTACTGGCATCAGCCGGCTTATTCCATTATTATCTCGAAACTATGGTAATTTCCGCAGGCAGCAATTACCGCAACTACTGGGCCTTTACACCAAACCTCATCGATGCGGTTAAACAGGCGGTGTGGGGGTCGTTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 10 3273503-3275815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009515.1 Methanosarcina lacustris Z-7289 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================= ================== 3273503 37 100.0 35 ..................................... AAATATGTGGTAGATAGTTTATACTGTTATTATGA 3273575 37 100.0 35 ..................................... CTTATAATACTGTATGTGAGAGTCCCGAGGTTCCG 3273647 37 100.0 38 ..................................... GATGTTATGGCGGACCCTGATATGGAGATCCGGATTAA 3273722 37 100.0 37 ..................................... ACGCTGTAGGTGCAATAGTAGGAAAATCATCAGGGTC 3273796 37 100.0 36 ..................................... AGGGCACCGAACCGTCGAAGTTCCCCGAGTACGAAT 3273869 37 100.0 36 ..................................... CTGTCCAAACAAACTTTATACAGTTGAGCTTGAGAG 3273942 37 100.0 36 ..................................... CAGGCGCATGGAAAGGGCTGGTTGGAGCACTATGTT 3274015 37 100.0 36 ..................................... AGCCTCCACTGGTTCAGTGAGCGCGGCGATGGGTGT 3274088 37 100.0 34 ..................................... TTTTAAAGACCGTGAAACCTGACATCTATTTCGT 3274159 37 100.0 38 ..................................... CGAGGTATTCTTTAGCTGGAACCACTTCCAGCTTTGTG 3274234 37 100.0 36 ..................................... CTCCTTTTGAATTTCCGGAACTCCTAGATGCTACCG 3274307 37 100.0 36 ..................................... TTGCTACAATCACGGGTACATATTTTTCAAATAATT 3274380 37 100.0 36 ..................................... ATTGCATTCGATGGAATAATAGGATAATTGATAAAA 3274453 37 100.0 36 ..................................... CTCCTTTTGAATTTCCGGAACTCCTAGATGCTACCG 3274526 37 100.0 37 ..................................... AATATACCAATTGGGCTAAACGCGAAAACGGGGAAAA 3274600 37 100.0 35 ..................................... AATATTGCTAAGTTCCGAGACACACACACAAGCAG 3274672 37 100.0 34 ..................................... GCTGTACAGGTTGTCAGGTTGCAGCCGAGTACAT 3274743 37 100.0 37 ..................................... CATAGGTGATATCTGCCGTAAAACCAACTGGTTCTAA 3274817 37 100.0 34 ..................................... TTTAATGAATACAACGAAGAAGACATTGAGACAA 3274888 37 100.0 38 ..................................... CTACATGGTATTTGCATACGGTCTTTGCATGGATGGGA 3274963 37 100.0 36 ..................................... TTTTCCTTCTTGCTTTTGTTGTAGCAGGAGGGATAA 3275036 37 100.0 35 ..................................... ATATGACGATCATTACACATCACACAACACTCTTT 3275108 37 100.0 37 ..................................... GACGCACTCTTAAAAATGATTGCCATCTTTGGGAGTC 3275182 37 100.0 36 ..................................... AAAAACATTTAAAAGAACTATCAGAGGCTGAATTTT 3275255 37 100.0 34 ..................................... TCTTTTCTCTCAGTTCCTTCACGTGTGAATCTCG 3275326 37 100.0 38 ..................................... ATGGGCTGTACATAAAATCAATACTCTTGCAGAAGATA 3275401 37 100.0 37 ..................................... CATCTCATTGGTGATCGAGGTTCCTCTAGCTACTTTA 3275475 37 100.0 37 ..................................... CATACAAGGTACGGGTCATTTCGTCCTGCTCATCAAA 3275549 37 100.0 193 ..................................... AGGGCAAAAATTTCCCGTGTTTGACTTGAAAATCCCTTATATTCCTCCTTTTTGAGCACTAATTTTCTTCCTGGCAATTTATCAAACCATTTATAAATACAAGAAAATCAAATTTCAATTTTTACAATAGGTTTATTGATACTTTAGCATTTTGTCAGTCGGCTCTCACTATGACCCTTGTTTCGGATTCTTA 3275779 37 89.2 0 .................GT.......T....T..... | ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================= ================== 30 37 99.6 42 GTTCTAATCCTTGTTATAATGGAACTCGCATCGGAAT # Left flank : CAAAAATGTTCTTTTTTACCCATCTGTAAATGTGCAGTACTTTACCAACTTGTAAGCAGTGATTATATAATCAGATTTCCAAAATAATAAAATAGCTATATATGTTGGGGTAATTTTGCTCAAACTCTATGTTTAAGACAAAACACAAATCAAAAAATATTGATGTTTGTACTTTGGATGGAGCCAAATGTATAAACCCCGTTGTAAAATTGCTTGTTAAACATGTTCCAATGTTTATCAGATCAAGCCAAACACCTAATCAATTTTTCAAGGTTCTAACGTCACTGGCTATCCAAAAGTTATCCATCCACTCAATTCAACGTCCAGGTTCAAACATACCCAGCGAAAACTCGTTACATCATAATCTGAAAAAATCGACATAGAGCGGTTAGAAACAGTAAATCACTTTATGCTTGCTGAACAAGTTAAGCCTTTCATAATACCTGGCAAAAAGTATTCATTTGCTATTGATCTTACAGATGATTCATTCGTTACACTCA # Right flank : TTCCCAACATTACATATCAATACAACACTATGTTCTAATTCTTATTATGATGGAATTATAACTATATCTCGCCATAACTATACAGAAATTATCTTTTACATACCTTCAATTTTTTTTGCCTTTACAATAGTGCCAAAACCATACGACACATCTTGTCCCAGTCCAATGTGATCTGGAAGTACGAAGTTGCAGTTGAAACTTCCTACAAAACCTAGCATGTTATTACCCTTGTATTTTGCATCAATTTTATTTACATTTAAAGACACACGAATCGTATCCGGCACCTGATAATGAATCCCTTTCGAGAATGTAATAATATTGCCAATAAGAATGCTTTTCAGTTTATCTTCTCTTTCGATAATATCAGCAGCACTGTACGCAAGTTTATTTTTTTGACTTAATGGGAGCCACGGGGTTTCGAATTCATAGCTTATGATGTCATCTGAAATCCCCACATCTTCAGTTCTTGTGTCTATTTTCGCGCTCCCGATGTCGTGTTT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAATCCTTGTTATAATGGAACTCGCATCGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //