Array 1 39655-38223 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFTR01000025.1 Escherichia coli strain JML233 sequence25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39654 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39593 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39532 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39471 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 39410 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 39349 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 39288 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 39227 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 39166 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 39105 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 39044 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 38983 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 38922 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 38861 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38800 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 38739 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 38678 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 38617 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38556 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38495 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38434 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38373 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38312 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38251 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCACTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18052-17047 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFTR01000009.1 Escherichia coli strain JML233 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18051 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 17990 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 17929 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 17868 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 17807 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 17746 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 17685 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 17624 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 17563 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 17502 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 17441 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 17380 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 17319 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 17258 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 17197 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 17136 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 17075 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //