Array 1 173496-178369 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAXW01000019.1 Brachyspira aalborgi strain PC5587-p PC5587-p_contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 173496 31 100.0 37 ............................... GTCCATGAGCCTGGCTGTCCTTTTATCAGTATACTGT 173564 31 100.0 36 ............................... TCTCTTTTAGTAAAGAGTTCATTTTTTATTCCTGCC 173631 31 100.0 37 ............................... CTCTTACTTCTTGTTGCTTGTATCTCGTTCATCGTTA 173699 31 100.0 36 ............................... ATGTGCGGATAGGAACTCATCGTCTCTTATACCTGC 173766 31 100.0 36 ............................... TTATTTAGTATGCTGTTTTGTCTCGTTTCGTTTCTA 173833 31 100.0 37 ............................... GGCATTAATATTGTGGAGTATACCGGGTATATTAGTC 173901 31 100.0 36 ............................... GATAGCTATATAATGTCAAGAGAGTATATAGCTATC 173968 31 100.0 36 ............................... TAAAATCATAACTTTATAGTTTTACTATGAAGTTAT 174035 31 100.0 36 ............................... TGTTTTCTGACATTACTGCCATTAGTTCTTTATTAA 174102 31 100.0 36 ............................... GATAGCTATATAATGTCAAGAGAGTATATAGCTATC 174169 31 100.0 36 ............................... TACTATAAATTGGCTCCTGTTTATTGTGCTGTCTAC 174236 31 100.0 37 ............................... GTTTATGAAGAATACACAAGAAAACTTGACAAAGTGT 174304 31 100.0 36 ............................... AACGGAATCGGATATTGAAGCGCTTCGTTTGATGGG 174371 31 100.0 37 ............................... TCCACTCTTATAATGTCCTTGTCTAACTTGCCAATTA 174439 31 100.0 36 ............................... AAAAAACCAGGAGGAAAACAATGAGCAAATATAAAC 174506 31 100.0 36 ............................... TATACTCCATTTTACAAACGGCTGTCTTTCTCTTTC 174573 31 100.0 36 ............................... CTTTTTCCTTGAAGAAATACACTTGAATCTGCCCGT 174640 31 100.0 36 ............................... CTGATATCTAAATTGTAATTACTCGTTGAATTACAA 174707 31 100.0 37 ............................... TTACCATGATATTTCCATTTTGCCATTATCGATCCTT 174775 31 100.0 37 ............................... TTGTTTGCGGAATATGATGAAAATGGTTTAACGATGA 174843 31 100.0 37 ............................... ATATACTTGTTTGTTTTGTTTGGTCTCTAAAGTATAA 174911 31 100.0 36 ............................... CTATTTAGAAAGTTTACAAAAGGAATGGGTAAGAAC 174978 31 100.0 37 ............................... TATTATTTTTTTTAGTTTTGAAATCTTTATTTTTTTT 175046 31 100.0 36 ............................... ATTTATAGCATATTACTAATGCCAGGGGATGTGATA 175113 31 100.0 37 ............................... AACGGAATCGGATATTGAAGCGCTTCGTTTGATGGGC 175181 31 100.0 37 ............................... ACAATCTACAATATTTTTATGCCAGATTAAAAATTGA 175249 31 100.0 36 ............................... TGTCATGTTAATCTTAAACCTCCTCGTTTAATCTTG 175316 31 100.0 37 ............................... TTCAAGATTTTAATATGGTTCATAGAATGTTTGGAAG 175384 31 100.0 36 ............................... GTGCAAGCAAGTATGGATTATCATATTATACAAGGC 175451 31 100.0 37 ............................... TTTTTTATACTCCGCTATCGTTTTTATTTAATTGCTG 175519 31 100.0 37 ............................... TTATATTTAGAAAATGCAGAGCCATTATCGGCATTAC 175587 31 100.0 35 ............................... ATTATAAAACTTTTTTTTTACCTTTCACTACCTAA 175653 31 100.0 37 ............................... GGTTCTTGTAATTGGTTTAATATGCTATCCTCTCTTG 175721 31 100.0 36 ............................... ATTATCTCCATATCTTTTATTCATTTCATTATATTT 175788 31 100.0 37 ............................... GGTTCTTGTAATTGGTTTAATATGCTATCCTCTCTTG 175856 31 100.0 36 ............................... ATTATCTCCATATCTTTTATTCATTTCATTATATTT 175923 31 100.0 37 ............................... GGTTCTTGTAATTGGTTTAATATGCTATCCTCTCTTG 175991 31 100.0 36 ............................... ATTATCTCCATATCTTTTATTCATTTCATTATATTT 176058 31 100.0 35 ............................... TTTCATACAGCAGACTTGTTTTTCTAGTCTCTTTA 176124 31 100.0 37 ............................... CCGATAGCTATATACTCTCTTGACATTATATAGCTAT 176192 31 100.0 36 ............................... TTTCGTCCCATTTCTCATTATACATTAGATTAAATA 176259 31 100.0 37 ............................... GTTATTAGCGGAATAGGAAAAGTATTAAAGTTTATAG 176327 31 100.0 36 ............................... CTCACATCTAGGTTATAATTTGCTGTCGAATTACAG 176394 31 100.0 36 ............................... ACGAGGTAATGGTTCTGTCCATTCAACTTCGGAAGT 176461 31 100.0 36 ............................... GCGTTTATGCCGTTTGTTATTTCTCCTGCTACTCTT 176528 31 100.0 36 ............................... ATTTTAAACTTAGATAGTATACAATACATTTTATTG 176595 31 100.0 35 ............................... GTAGATGCTCCGCCTGTTGCGTCAGCTGCTAGTGG 176661 31 100.0 36 ............................... TAGTGTAGTAATAAAAACTCGTTATCTCTTATTCCT 176728 31 100.0 36 ............................... ATAGTTTATGATATAATTTTTCTTTTTCTTCTTTTA 176795 31 100.0 36 ............................... TTTCACATTGTTTGTATATTCTGCATAACCGCTTAA 176862 31 100.0 36 ............................... GAACTTTTTATTAGTATATCCGCTTGTGTATGCAAT 176929 31 100.0 36 ............................... ACAGGTCTTCCACTTTCCATTGCTATATTTATATTA 176996 31 100.0 36 ............................... AACATTTGCATCGTATAGATTTTGATTTATCATTAT 177063 31 100.0 37 ............................... GATACTTTGTCCATCTTTCTTGTGTATTCTTCATAAA 177131 31 100.0 36 ............................... TCCCCAAACCAATTTTTTGCTTCTTTCAATGCTTTA 177198 31 100.0 35 ............................... GGCTGTCCTTTATCTAATATACTGTTTTGTCTCGT 177264 31 100.0 37 ............................... CTTGTATACATTATTCTTCTCCTCCTTCTGCTTTTCT 177332 31 100.0 36 ............................... TTCAAATTGACGGCAATCTATTAAAGAACGACTTAA 177399 31 100.0 36 ............................... TAATTGCCGAGCCTTCCAAATATTTTTTTATCTTAT 177466 31 100.0 37 ............................... TGATGTATTCTTTTAATTTCATTTTGTAATAAGTTGG 177534 31 100.0 36 ............................... GAGATAAGATTAAAAGAAGAAGAATACATAAGAAAT 177601 31 100.0 36 ............................... GTTTTTGCCCATGCCTTTTGTGAACTTTCTAAATAG 177668 31 100.0 36 ............................... ACAAAATTTTTTCCAGTATCAACCAATCTAGCATAA 177735 31 100.0 36 ............................... TTTTTACTTGCAAAAAATCATCGTTTATTATAGGTC 177802 31 100.0 36 ............................... CAGTGCGCGCTTAAGAACTCATCGTCTCTTATACCC 177869 31 100.0 37 ............................... CAATGGGAATTGCCTTTTTTTACTCAAGACAAATATT 177937 31 100.0 36 ............................... TTGCTGGTAAAAAGTCCGCCGTATCGCCTTCTACTT 178004 31 100.0 36 ............................... TTCTCTGCACGACTGTCGCGCGCTCTTCTTTCGTAG 178071 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 178138 31 100.0 36 ............................... AAAAAAAGTTCAACCTCGTTATCGCCTCCGACTTTA 178205 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 178272 31 100.0 36 ............................... CTATCTTTTGAAGTTTCTTTTTACAATCTTTCAAAT 178339 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 73 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAAGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTAAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTTAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG # Right flank : TTTATCTTTTTGACCATTTTCAAATTATTTATAAAATATTTTCATTTGTAAAAATAATATTTTTTTAAAACTGCATGATAAAAATAACCTATTGCCACAGATATTATGATCAATAATTTAAATCCAATCTAAAATTGAGAGGATATAAAAATTTAAAGCCATTATCCCCCCCCCCTATAAAGTTATCAAAGAATTTATTTCTGAAATTCTCTCGCCCTTTTTAACGGGAATAAACCAAGCCAAATTATCAACTTTTTCTTTATTCATTTTAATTGAAATTCTAATTCCAAATAAAGTTAATCTCAAATACTCGTTATTATTCGATATTCCAAAAAGCGTCCACCAATTACAATTTAATCTCAATTTTTGATAATCATTATTTGAAATCGTTTCTTTATTTTTAAGCGATAATTCTCTTTCTAATCTTTTATACTCGAAAGAAACAGGCTCAAGAATGCAAGATTGTTTTATAAATGTTTCTCTATCTGAAAAATTATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //