Array 1 7124-4203 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQA01000002.1 Pseudoalteromonas sp. BMB MR3_cotig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================== ================== 7123 29 100.0 32 ............................. ATATCGCCCATCGGTTTATACCTAAAAATGGC 7062 29 100.0 32 ............................. GGGTTGATAAATGGCTGATGAACAAATTATCG 7001 29 100.0 32 ............................. CATACGCTCATATGGGCGGTGCGTTTCCTCAA 6940 29 100.0 32 ............................. GAAACTCCCATACTAACTTAAGGGGATTCCCA 6879 29 100.0 32 ............................. TCTACAAAGCCCCCATCGAGGGGCTTTTTTGA 6818 29 100.0 32 ............................. TATGAGCATTGGGAATCTGAGGAGAATTAAAA 6757 29 100.0 32 ............................. CCTTGGTACTCGATACGTGCTAAACACGAGTT 6696 29 100.0 32 ............................. TCAACATCCTGTGTCAATGCAGGCGATACGGA 6635 29 100.0 32 ............................. ATGATTGAGCAGCATTATGGAAAATGGATGGA 6574 29 100.0 32 ............................. CTATCAAGCGCAGGCCAGCTAGGCCGTGACGT 6513 29 100.0 33 ............................. CGATAGCCCTGCCAACGAGAGGCAGCTTTAACC 6451 29 100.0 32 ............................. AACAAGTCGCTGACGTGTATAAACACGTGGAA 6390 29 100.0 32 ............................. GTTAAAAGGGAAAGCCGCGAGTTGTTGGTGAG 6329 29 100.0 32 ............................. ACGGTCGATGAGCTTAAAGAACTCTATACCGA 6268 29 100.0 32 ............................. AACCCATTAGCTGAGCAATTATTAGCACAAGA 6207 29 100.0 32 ............................. ATGGTTATACGCGATTAGCTAATCAGCTATTT 6146 29 100.0 32 ............................. CGGTTTTGTGCTACTGCTTTTGAGATTGGCGC 6085 29 100.0 33 ............................. TGAATAAACCCAACAAAACAAACTTATTGGTTA 6023 29 100.0 32 ............................. TAAACGAAGGTTTTTTTAGCGCCAAATTTGCG 5962 29 100.0 32 ............................. CTAAATCACCTACCGAGAGAGACAACCGTTGG 5901 29 100.0 32 ............................. TTATCGAGATTTTTCAACAGTGGCATAACACT 5840 29 100.0 33 ............................. GCGGTTTCATTGCTGTCTCCGTTAATTGAGTCT 5778 29 100.0 32 ............................. AATACACATCAGGTCAGTTGGCGTGGGTTTTA 5717 29 100.0 33 ............................. CGGGGGGGGATGCGCTATTTGCGATGGAGAAAT 5655 29 100.0 32 ............................. TATGGTTCGACGTGGAGTGCGAATACGATTTA 5594 29 100.0 32 ............................. GTAATCGCATGTTAAATAAATCTACTCTGACA 5533 29 100.0 33 ............................. TGGCGCATGGTTCGGCGGTACTGGTTGAGTTTG 5471 29 100.0 32 ............................. AGTATATGGAGCTGGTGGGTTCTGATTTTCAC 5410 29 100.0 32 ............................. TTCATTTAGCTTTTTTCGGCGCTCTTCATTAG 5349 29 100.0 32 ............................. ATCAGTGATTGTGATTTGAGTAAACCAGTTGA 5288 29 100.0 32 ............................. ATGCAGTGCCGGTGCTAATTGAAATGGGATTA 5227 29 96.6 32 ..................A.......... CATGGGTTGTCATTGGCACAAGCTCTGCATTT 5166 29 100.0 32 ............................. GACGTTACTATGTTTGAACCAAACAATTCCCA 5105 29 100.0 32 ............................. AGTACGCGAAATTGGTCGACTCGGTCGCGAAA 5044 29 100.0 32 ............................. GCAGCTTGATTAATCTTCATTGCCTCACCGTT 4983 29 100.0 32 ............................. TAGTGCGCCAGCAACAAGCAAAGCGCAAAACC 4922 29 93.1 32 .............GG.............. AACATTATCTTCAGTATGAGCACTGGCAAAAC 4861 29 93.1 32 ............TG............... ATGAAATTCGACGCGCTCGTGAAGAATCTAAA 4800 29 93.1 32 ............TG............... TATTCTAAAAATCGGATGTTATGGGAGCGCTC 4739 29 93.1 32 ............TG............... GCAACCCAATTCAATTAGATGTCTTTCCTGTT 4678 29 93.1 32 .............G......A........ CCAAGCGAGAAGCAGGACAGGAGAAATAATCA 4617 29 93.1 32 .............G...T........... CCTACTTAAAAGAAGTTCAGTCTGAGCGGGAC 4556 29 96.6 32 .............G............... CCTGAGCATCTAATAATAACCGCTGCTTTACC 4495 29 96.6 32 .............G............... TGAAAGGGCACGTGGCCGACCCAAACAATTAT 4434 29 86.2 175 ..........C.G..G............T GAGTTATTCAGGTCTGAATCATGTGCTGTATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTTAGCAGGCTGCGAAACGGTGATGACTCCAGACTTCCTGTCTTTCGCCCTTCGGGTCAGCAGAGCTGTTCAAAAATATTCCAGATATTTTTGTCGGTCCTAC 4230 28 79.3 0 T.CGC....................-..A | ========== ====== ====== ====== ============================= =============================================================================================================================================================================== ================== 46 29 98.1 35 GTGTTCCCCGTACACACGGGGCTAAACCG # Left flank : AAGAAGCCAGAGCACACAGCGTTATTTGTGAACTAGATGGTGAAGCAATTGGGTTCGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGACTGTATCTTGAAGACCTATATGTGTCACAAGACAAACGCGGTGTTGGCGCAGGTAAGGGGATCATGAAATACTTGGCAAGACTTGCACTACAAAAGGACTGCGGTCGTTTTGAGTGGGTGGTACTTGACTGGAACAAGCCATCAATCGATTTTTATGAAAGTATCGGTGCTAAAGCACAAAACGAGTGGATTATCTATCGCTTATCAGGGCAAGAGCTCATCGATTTTGCTGAGCAAGTATAGTGAAGTTTATTGGCCTGTTGGCTATACATTATTTGAAGAGAAACTCCGATCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAACATTGTAAGTGTGATTTTTATTAATAGAAACAATAATGTATTTATAGA # Right flank : ATAGGACATTTTAGTAGGAAAGAGGCGGTGGACAGCTTGGCTGGAAGTGGTGGCAGGGTGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCATAGTTGATTATTAATCTACCATCAAAAAAATGCTAGCGTGATCTCTCTGTCAGTTTGTCTCAGGTCAATGACTTACTTTGTTTGTTCTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATTTTAGATATATTGAAGCGGTATTGTTTTGGCAGGGAGAAATCCAGACTGGTACTTTCCAGAGCAAATTTAAGCTTTCAAGGCCCAGCGCACGGCGTTATGTCACCGACTTTATTGAGCGTTATCAAATTGCCGCAAGCTACAATGAGTCTGAGAAAGCCTATGTGCTGGCAAGCCCCTTTACACCTAACTATATATCTCAGGATTTTACTGAGTATACTAGTCTCA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6155-9735 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQA01000172.1 Pseudoalteromonas sp. BMB MR3_cotig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================== ================== 6155 29 100.0 32 ............................. GATTGTTCTGTTATTGCCACGCCAGATGGGGC 6216 29 100.0 31 ............................. CAAACTGAACTACTCACCAAAATGGCCGAGT 6277 29 100.0 32 ............................. TCACTGGTGACCACTAAAAACCAACGCTACGA 6338 29 100.0 32 ............................. AACGCTGCGCACAGCATTAGAATTGCTCGAAT 6399 29 100.0 32 ............................. CCAAATCAGACATGCGCGCATTTGCATTGTCT 6460 29 100.0 32 ............................. TGTTTTCGTCAGGCTTTCATCGCGTATTCCTT 6521 29 100.0 32 ............................. GAAAACGACTACTACGAGCGTGAACAGCTTGA 6582 29 100.0 32 ............................. TGAGACATTTATGGGTGATATTATCAAGACGC 6643 29 100.0 32 ............................. GTAAATTGGTGGTTGATATTTCCCCCCCTCTT 6704 29 100.0 32 ............................. CAATGTTATCCCCCCTGAAAATCTACAAACAG 6765 29 100.0 33 ............................. GTGATCGAGAAACTGCTGTTTTGTGTTTACCAC 6827 29 100.0 32 ............................. AAATATATAAAATATATTTATTATGTATTTTT 6888 29 100.0 32 ............................. ATATTACTCGAAATTCTGTCTCTACATTAAAA 6949 29 100.0 32 ............................. TAAACTATAAATAGGAAATCTAATGTTAACGT 7010 29 100.0 32 ............................. CCTTGGTTTAACGCTGTATGCGGTGTATTGGC 7071 29 100.0 32 ............................. GTAGACGGTGCGCCTTACCTCTCGCCTGTAGC 7132 29 100.0 32 ............................. GAGATCGCGAACCTCTTACTAGGCCAATACTA 7193 29 100.0 33 ............................. TAAAGCCCGATCCCTTTACGTTAGTACCAGGGC 7255 29 100.0 31 ............................. TATGGTATCGAAAACCTAAATCAGCACCGGT 7316 29 100.0 32 ............................. AGAAATATGGTGAGATTGACTCGGCCAAAGAA 7377 29 100.0 32 ............................. TATCTCAAAGTGCATAACCTAAGCCACGAAAC 7438 29 100.0 32 ............................. GTGACAGTGTGGAGTCCCAATCGGTAAACTTT 7499 29 100.0 32 ............................. TGAGGTTTAAATGGGTTTATTTAGCTCAAAGT 7560 29 100.0 32 ............................. TCACATCAATGTGCCCAGGCGCGTCACATTAT 7621 29 100.0 32 ............................. ATCGGCATATCTCCACAGTTAGCTTGTAATTT 7682 29 100.0 32 ............................. TTACCCAGTGGCGATGTGATGACGCCAGATGT 7743 29 100.0 32 ............................. ACAATCTGGAACAGTTTTATAACCTCATTGCT 7804 29 100.0 32 ............................. CCCCCATCGAGGGGCTTTTTTGATCTAAACAC 7865 29 100.0 31 ............................. ACCTTTTAATGGAAATGAAAAATGCTCTAGT 7926 29 100.0 31 ............................. TATGCCGACATATTAACTATCGACATTAGAT 7987 29 100.0 32 ............................. AAATCAACATCGAGGTTTATGGGCAGGTCAAT 8048 29 100.0 32 ............................. TTGAATGGACGCTAGTTCCACATGTTCAAGTT 8109 29 100.0 32 ............................. CTTTTCGCGTGACCCAACCAATTCCTTTAAGT 8170 29 100.0 32 ............................. CAGGTTATTGAAGAGGATGGTTTTGCTTTAGT 8231 29 100.0 32 ............................. CTCTTTAATTGTCACATAGCTATAAACAAACC 8292 29 100.0 32 ............................. CCGACTGGCGCACAAGCAAGCGCTTCAGTTCG 8353 29 100.0 33 ............................. TCAGATGCCGCTACTACAACAGATTATTTCGGC 8415 29 100.0 32 ............................. TCTTTATATTCGCCAAACTCAACACGCTGCAG 8476 29 100.0 32 ............................. TTCGGCTTTCAATCCCTTTTCTTTTGCACTGA 8537 29 100.0 32 ............................. TAACTTTAATATGCGTGTGCCGGCAATGATTT 8598 29 100.0 32 ............................. CCGTTAGACTCAAACAGTTTTGCAAATTGGTT 8659 29 96.6 32 ............T................ CGGTTTTGCATGTCTTCAGCGGCAGCGTAGGT 8720 29 96.6 32 ............T................ TTATTTCACTATTAAACGCTGGTAGCGTAGGT 8781 29 96.6 32 ............T................ TGTTTTCAAACTCAGCCTTCAGAGTTTTAATT 8842 29 96.6 32 ............T................ GGTGAGCAGCTCAAAAAAGCCAAGCAAGCGGA 8903 29 93.1 32 ............T...............A GTTCTTCTTACACCTTTTCTACCTGCTTGCCA 8964 29 96.6 31 ............T................ AATAACGCGCCTTGCCATTTACATGTCAGTT 9025 29 96.6 31 ............T................ TAATATTGCTTATTTGTAAATGTTTCAATGT 9086 29 96.6 33 ............T................ CACACCACTCCAACTTTCTGAAGTAAGCCAGGC 9148 29 93.1 32 ............T..T............. CGTAATGGACTTGCTGATTATTATATTTCTCT 9209 29 96.6 32 ............T................ ACGATAGGGTGAACCTGTTTAAGTCAAAGAGC 9270 29 96.6 32 ............T................ CGTGATTCCATAGCTCTTTAATTAGACACCCA 9331 29 96.6 32 ............T................ CTAACATACCGGTATCGCTCGATGTCGACCCT 9392 29 100.0 50 ............................. CGGCTTTCAAACTGGGTTTCAACTAAATCATTGAGGCGTGTTACATCGAC 9471 29 93.1 207 ............TT............... AGCAAAACACGGAAAAGTACGAGGCTAAACCTGAGTTATTCAGGTCTGAATCATGTGCTGTAATTCGTCCGTGAAGCAGCATCCTTCACGCATCCATGCGCTCACCTTAGCAGGCTGCGAAACGGTGATGACTCCAGACTTCCTGCCTTTCGCCCTCGGGTCAGCAGAGCTGTTCAAAAATATTCCAGATATTTTTGTCGGTCCTAC 9707 29 72.4 0 T.CGC.......T.A.....A.....T.. | ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================== ================== 56 29 98.5 35 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : TCCATTGGTGACGAAGGTCATCGCAGCGGAGGACCACTATGAGTATGTGCATGGTTGTTACTGAGGCGGTGCCACCGAGGTTAAGAGGTCGCTTGGCGGTGTGGCTACTGGAAATCCGTGCGGGTGTGTACGTGGGGGATGTAAGTAAACGCATTCGCGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGGCGGCAATGCCGTTATGGCCTGGGCAACCAACACAGAATCAGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCGGTTGATTTTCAGGGGCTGAGATTGGTGAAGTACACGCCCAGAGTAGATGATAGCCAGGGGGCAGATTAGCGAACGCCCCACTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGAGGTTAAGATTTTTACCTCACAATGAGAGGTACTTTTGTACCTAAAATTTTCGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : GGAATTACTCAGGTCTGGATTACGTGCTGGAATTTATCTATGAAGCTGTTAACCGGTGGGGACTTTGGACTCGCCCATACGCTCCGGATTAAGTGATAGCCACCATTGTTCGCCGGTTACTTATCTACATGGCCTAAATCACGCTCAGGATCTAATAAATCTCTCACTCTTCTTTTGAGCACCTTGGCTTCTGGAAAACCACCGTCGGCTTTTCGGCACCAAATTAACGTATCATTGTAGTAGATTTCGAATATGCCTTTACTTGCTGGTGCAAGTGCAACTTGTTTTAAATCGTCAGAGAAAGTTGAAAGCAATTCTTGTGCAAGCCAAGAAGCTCGCAGCATCCATTGGCAAAGCACGCAATAATGAATTGTAATGATCGGTTTTTGCATGAATTTACATTAACTTGAATATTGTGATTGGATTTTAGCACTGTGATTTATGATGTGGCTAGCATGAAAAAAACGGGGGTTACCCCCCGAAATTATCCAGGGAGACCT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //