Array 1 6002-6209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMI010000001.1 Vibrio metschnikovii strain M21D Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6002 28 100.0 32 ............................ GTAACGTTAGGTTCAACGAGCGCCGGATTACC 6062 28 100.0 32 ............................ GCTACTTTGTGTATGACTTTGATATGAAGGAA 6122 28 100.0 32 ............................ TTTCAAGAAAAACGGTTAACATTAGTTAGCCG 6182 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCGGTAACTTTGCCCTGATAAATTGTGCACGCAAAAGATTCAACTGTTGCTGAAAGGTCTCTTTCTTTGGTGTTGCTGGTTCATTGATTCCGCAGGCTAATTCGCTTCAACTTGTTTGGGATCTTATCGACAACAATGATTGCTGAAAGTAGGCTGGTTTGCCATTTTGAGTTAAACTTCTGAGAACAAATGAATTTTGTAAAAGTTCAATGTAATCAATGAATAATAAAGCATGACAAACGCTTCAAGAGGGACTTCCAACGCGCGGCATTTTTATTATGCGTTGATTTTGGTGGTTACGGTGTTATGCGGAAACTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGCAGCATTTTTGTAATGCGTTGATTTTTGTGTTTTACGGTGTTGTGCGGTGAGTTGGTCGTTGCGTTGCTCACCCCTTAACCGGGCGTTAGCCGACTTCTACCACCTTACTCATCAGTAAGTGTATACTTAGCCGAGTTTTACTTACATTGAAGAAGATCACTATGACAGCATTGACAGATAACATGTGGAATATGAAACCAAATATACCGCTGGCTAAACAACTTGCCAAAAGAGATGTACCAGCTTTGGTTTATGACGCTGTTAACCTCGAGGGTGTTGCAATGACTTTACCTGAGGTGCAAACCATTTTAGATGGGATCACCGTAGGTGGCCATCGAATTAGTGATCAAAATATGGCAATGAACCAAGCTCGAGCATGGGAGTTTATTTTTGGCTTAGTTGATCAAGGTGAGTTCCAATTTAATAAAGAAAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2263-2650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMI010000019.1 Vibrio metschnikovii strain M21D Scaffold19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2263 28 100.0 32 ............................ AGTATGGAGTATTAGGTCTTTTGGATTGCAGC 2323 28 100.0 32 ............................ GTGACAATCGCAACCGTTACGCCTACGGTTAC 2383 28 100.0 32 ............................ CGTTAAACTTTTTTGCAATGTTCGCCCAAGCC 2443 28 100.0 32 ............................ TTTAGATATAGCATCTTCGGTGCTGCAACGAT 2503 28 100.0 32 ............................ TTTTGCGTTAGATAGAATGTTCATTGGTCGTT 2563 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 2622 28 89.3 0 ...T.......T.T.............. | A [2645] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTCCGGCTCCGCCCTGATAAATTTTGTTCGTAAAAGATTCAATTGTCGCTAAAAGGTCTCTTCCTTTGGTGTTATTGATCCCTTGATTCCGCAAGCTAATTCGCTTCAGCTTATTTGGGATCTTATTAGCAACAATACTTGCTGAAAGTAGGCAAGTTTATCATTTTGAGATAAAGTGACCGAAACAAATGCAAATTGTAAAAAATCAATATAATCAATAAGTAATAAAACATAACAAACGCTTCAAGAGGGACTTCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTTGTGGTTACGGTGTTATGCGGAAAGTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATTTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : ATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGACAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGTTGCCCCGATAAATTTAGCTATCGTAGAGTGAAAAATGATAAGAAAATACAACGATAATGACTTAGATTCGATTCTTGAAATCTGGTTGACTGCTTCGATGAAAGCTCACGATTTTGTCTCAGCTGAATTTTGGAAATCCCAAGTTGATAATATGCGTAATATTTACCTTCCAGCTTCAGAGATATGCGTTTATGAAATGGATTCTAAAGTTGTTGGTTTTTACGCATTGTATGAAAGTAATCTGGCAGCGATATTTGTAGATCCTGACTTACAAGGTAAAGGTATTGGTAAGCAATTGCTGACCCATGCAAGATCGCAAAGAGTCATGCTTACTCTTTCTGTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 218676-219363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMI010000002.1 Vibrio metschnikovii strain M21D Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 218676 28 100.0 32 ............................ CTTTTCGTGCATCGTCTAGCGAGTAATAGCCG 218736 28 100.0 32 ............................ TGAGTGTGGCTCTGGCATTTTGAATCAACTCA 218796 28 100.0 32 ............................ ACGTAATGACGCTACCCGCGCTTATTGCTGGC 218856 28 100.0 32 ............................ TACAAAAAGGCGAAAAACTACGTACAAGACAA 218916 28 100.0 32 ............................ GCAACGCCGTCAATCGCAAGTTGAGCTTCGCT 218976 28 100.0 32 ............................ TGAACCACTGCCCGACCCTACAAATCCTGTTC 219036 28 100.0 32 ............................ CGATTGGGGTCAAATTGATACAGCAATTCGCG 219096 28 100.0 32 ............................ TTTTGTCTAATACAAAAGAGGCTTATAGCGCA 219156 28 100.0 32 ............................ GTCTGCATCGGTCATTTGTTCTGATTTGGCTG 219216 28 100.0 32 ............................ TCGGAATACCCAAATTGCCGCAATCGCCGCGC 219276 28 100.0 32 ............................ TATTGATGTTTTTGCACTTTACAAATCGACTG 219336 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGATGTGACTTACGTAAGCTTTGTGCGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCGGCATTATGGGCAGAAAAATCTGCTAAACCGCTGGAGGAATGCTTGGCCGCTTTGCAACAAAGCAAGCCGACAGCATTGTGCCGTTTGCCGTTTATTTACCTACATAGTCAGCAAACTAAGCAGCGATCACCCGAAAAAAACAGCAAGTTCCCGTTGTTTATTGAAATGCAGCAACAAAGCGCTTTACAAGATGGTCATTTCGATTGTTATGGACTGAGTACTAAAGGGAATGGGCTTCCTACGTTAGCCACCGTACCGCATTTCTAAAATGAACGAAAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGTTTTAAATACAATGGGTTACAATGGACGGTTTTTGATAAGGTAAAAATGCGATTTTTATCCTAACCAACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : AAACCATTACACGCTCACCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGAGCGATCAATGGTCACCGTTTACTGATACTGCGCATAGATTCGCGCCTACGCGGGAATGACGGTTTTGTGTGGTTTTGGGATATGATCTCCATAGATCCCCGTCATGTTTTGCTTGCTACTGCTGTGAGGCAGGGAAATGAAGGTGTAGCGATCATCGAAAACTGAACCACTAAATACAATTAGTCAGCATAGACTCCCACCTTGACTGCAATGATGCTTGACGCTTTGAATATTCGATTATTCACCGTGATTACAAGCAAACGTGAGTTTCTTAACAATATGTGCGCCTAATTCCTTAGACACTACGTTGTATGATTGATGTGAGTGGTGGAATACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAATGAATTGCATTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 624-295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMI010000023.1 Vibrio metschnikovii strain M21D Scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 623 28 100.0 32 ............................ TCACTAGCCCAACACTTTAAATCTCCGCTTAA 563 28 100.0 32 ............................ GCTTGCAAGTAGAAAGCGACCATGAAATCGCT 503 28 100.0 33 ............................ ACTAAACTTCTGCTCAAACATAACGCTTTCAAT 442 28 100.0 32 ............................ CCTTGGCAAGCTTAATGAGGCTGCAAACGCTA 382 28 100.0 32 ............................ GTCAAAGCTTGCATTGACTACGTTTTCAAACG 322 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCATGCTCACGGCAACATTACTGCTTTGGCGTCAAAAAATTTTGAAAATGAAACGATAATACTGTCATCAAGCATTAAAGATAGCGAGTTACTTTTTATTCTATCGTCCACAGTTAACGCTGCTGTCTTATCAACACATGATTTACTAGAGTTTTATGACCTAGATGACGTGAACTTGAAACGTTGTCTAGGTTTCAGTGAACGAGTCAAAAAACTGAGTAAAAAATTCGTATAACAAACTGTTCAAGAGGGATTCGCAACGCGTGGCATTTTCACTATGCGTTGGTTTAAGTGATTAAGGTGGTATGCGGCGGCTTTGGTATTGCGTTGCTCACCCCTTAACAGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCATT # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTTATTGAACTTCAGCAAAATCAATATATAAATTTTAATGGGAAAATTCAGTCTAATTTAGAAGTTTTCCTATTCTAATTTATTGATATTATGAGTTTATTATTCTTTTTGGTGGCGATTGAAAGTTGAACGATGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2547-2159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMI010000023.1 Vibrio metschnikovii strain M21D Scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2546 28 100.0 32 ............................ GTGATAAGTGTCACAGTTTTAAATTCAAAGTT 2486 28 100.0 32 ............................ ATTCATGCGCGGGGTTCTCAAGCGCTTTAGCT 2426 28 100.0 32 ............................ ACGGTTACAAGCATTCCAAAATGACATTACTG 2366 28 100.0 32 ............................ AATGGCAGCAAGGGCAATCAAACCAATGACAA 2306 28 100.0 32 ............................ TTGGTCGTCATACTCCGCTTGACCCCTATCAT 2246 28 100.0 32 ............................ TTATTCAGCAATACTTAGAGAACTTTCCAGAA 2186 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTTGATGAAAGTGTTCAATCCAATGGTATAGGTAAATATCTAATCTTAGTGACCAAAGAAGAGTTGAGCCCAAGCTGTAAATTGGTTTTACTGTCAGCACCGAAAGCACAAGGTTATTATCCAAAAATTGGTTTTGAAGCTCTTAATAGTGCATGGGTTCTATATAGCGCAGAACAGTTAAAAATCAATTAAATCAATGTATTATTTGCTTATAACAAAGCGTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGGTTTTGGTGGTTTTGGTGGTTTTGGTGGTTACGGTGTTATGCGGAAGCTTGGTAGTAGCGTTGGCTGCCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTCATTGATTTATATTAATAATAAATAGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : TATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGCGGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGCAATGCGGTAAGTTAGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTAGGTCACAACGGGATCACACGAATAATGTATGAAGATATCGAGTGAGTATGGAATAGCCAATAGGGTATAGAGGAAAGAAGGCAAAAAGGACGAATATTAGTCATTTCCATGATACCCTTGAGGCGCTTTCGTGCGCACCTTAATCGGGGCGCGATTGAAGCGTGACGCCCGCAAGACCTCAAGGTAGAGCGATGCCCAATACTTCGGCTTCGATTTTTGTCTTTTTCTTCAATTCTTTTTTGATAGTCAATAATGAACGAGAGACCGTGGGCAACATTGGTCGTGACCTAACAAACGATTCAAGACAGACTCGCAACGCAAAGCATTTTTATTATGCGTGTAGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21983-21775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMI010000014.1 Vibrio metschnikovii strain M21D Scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21982 28 100.0 32 ............................ GTAAATGAATAAACGTTACCAAACCCCGTCGT 21922 28 100.0 32 ............................ CTCAATTGCACCTGACAAAGTGACACAACTCC 21862 28 96.4 32 A........................... GTTGTATTGTATTACGCAAGTATTCACTTATT 21802 28 89.3 0 ...........C............AG.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAGTGTTCACTGCCGCACAGGCAGCTTAGAAAGTTAAAATGTCAACCAAGGATGTAGGTATTTAGTTCACTGCCGCACAGGCAGCTTAGAAAATGCTGATGAGGTTGATTATCACCTTGGTTTTTGTTCACTGCCGCACAGGCAGCTTAGAAAAAATTTCCATGCCGATAGTGTTCACTGCCGCACAGGCAGCTTAAAAAATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCACTTTCGTTATACTTTGATTTTATTCGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATAAAATCACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCATT # Right flank : ATTGGTAATTCTAGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGTAGTTACGTTGCTCACCCCTTAACGCGGCGTTATATGCTTGGAAGAATCTGTAAGGAAACAGGTGTTTAATGGTGAACAAAATTACATTTTTCACAAGGCTAGAGCGCCAGATTCTTTCTGGTAAAAAGACTGCAACGATTAGGGATAAATCTGAAAGCCATTATTACCCAGGGCAGGTTGTTGAAGCATTTACTCACGAAGATGGGCGGAAAATCTGTAGACTAGAAATTGTCGGTGTTGAGCATGTGAACTTTGATAAACTCAACAGAAAGCACGCAAAAGCAGAAAATCTTCCATTTGTGTTCATGCTCAAATGGATTTTGCGAAAGATATACCCAGCAGAAAAGAGCTTGTGTGTTATTAGCTTCAAAGTCGTTGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 22539-22283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNMI010000014.1 Vibrio metschnikovii strain M21D Scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22538 28 100.0 32 ............................ ACACTAACAGTAAGAAACTGATCATAGACAGT 22478 28 100.0 32 ............................ GTTAAAATGTCAACCAAGGATGTAGGTATTTA 22418 28 100.0 33 ............................ ATGCTGATGAGGTTGATTATCACCTTGGTTTTT 22357 28 100.0 19 ............................ AAATTTCCATGCCGATAGT 22310 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 29 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGTTGTTGAGTTTATGCAAAGTCATCCTGACTGCTCCCCAAACAGCCTTGGAATGAAGCAGGCAGAAATTTTTAGGCGTTGTGGTCTTGGCTGGGGAGAGCAGCGTAAAGCAAGCCCATCGAACCAGCAATATTGGCTAGTAGCCTTGCTACGACAGCTTGAGCAAGAAGGTGTAGTTGTTCAGGTGGTAGAGTCTGGTCCTTGGAGACTCTGCTAACTCAAAGAGTACGCACATAACAAACGGTTCAAGAGGGACAACCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGGTTACTGTGTTATGCGGAAGCTTGGTGTAGCGTTGGTTGCCCCTTAACCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTTGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTTGAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCACTTTCGTTATACTTTGATTTTATTCGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATAAAATCACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCATTGTTCACTGCCGTATAGGCAGCTTAGAAAGTAAATGAATAAACGTTACCAAACCCCGTCGTGTTCACTGCCGTATAGGCAGCTTAGAAACTCAATTGCACCTGACAAAGTGACACAACTCCATTCACTGCCGTATAGGCAGCTTAGAAAGTTGTATTGTATTACGCAAGTATTCACTTATTGTTCACTGCCGCATAGGCAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.29, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //