Array 1 23136-17183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTP010000064.1 Aphanizomenon flos-aquae FACHB-1416 contig64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =========================================== ================== 23135 38 94.7 40 ....................................TG TGGCTATTTGTGGGGTGAAAAACCCAATATTTCTGCACTA 23057 38 94.7 36 ....................................TG TTCCTTATGCCTTCTGATTTTTCTTAACTAATGAAG 22983 38 94.7 33 ....................................TA AAAATTCTCCGGATCTAGGTTCTCCAGATTCAT 22912 38 94.7 34 ....................................TT GGGATAACAGGCGCGGGTTATGCACCAGCCTGGG 22840 38 94.7 38 ....................................TT TGATGTGATGTATTCCACCCCGCGGCATACATATCAAG 22764 38 100.0 35 ...................................... TTCTGATACTTGCGGATTTGGTGAGGCGATCGCAA 22691 38 100.0 37 ...................................... ATTAAACAAATAAAGTAAATCTAGATTAGATTTCAAG 22616 38 100.0 35 ...................................... CCCTGAGTCGTAACCAGCGCCGAATTGGTTCGCCA 22543 38 100.0 42 ...................................... TACTTTTACATTTCTATATTCGACTACGGTGTTGACGGTGGT 22463 38 100.0 39 ...................................... AGCCATTTGTTGTTCTTCTATGGCATGAAGTTGATCAAG 22386 38 100.0 39 ...................................... GGGTATGGCGGTGAACGATGCCAGGGAGAGCGATCGCAC 22309 38 100.0 34 ...................................... ATTCATGCTTATCAATCAGTGGGTAAAGTCGTAG 22237 38 100.0 34 ...................................... AAAATGGGCGAAACTCGAGTGATAGGGGAAATGG 22165 38 100.0 39 ...................................... CAATTAGGGTGGATCTTTTTTACCCAGTCCAAGGCGTTA 22088 38 100.0 32 ...................................... CCTATCAATGAAATAATCGTCAATGCAGTCTT 22018 38 100.0 36 ...................................... ATCCCCAGTCGGAAAAGCAAATTCTTTCCCACTGAT 21944 38 100.0 42 ...................................... TTCAATCAAGATGACCTAGAAAGTCCGCGGACTGAAAGGGGA 21864 38 100.0 35 ...................................... AAAAAATCTCTCCTACCAGAGCCGCGATGACAGGT 21791 38 100.0 39 ...................................... AACCCGCTTAATGGGCTGGTATGTGCAGATAAGATATAT 21714 38 100.0 34 ...................................... CTCCGAAGGATGGGTAACTTCTGCTACGCAAAGC 21642 38 100.0 34 ...................................... CAAAAATATCTCGATCAACATGATCTTTTAATTC 21570 38 100.0 37 ...................................... TTATGCTTCTGAATCTGAGGTCGCTCCTGACATAGAA 21495 38 100.0 34 ...................................... GGCAAATTTAGTGCTGACAATTTCCAAGTGATCT 21423 38 100.0 36 ...................................... CAGCATTGCCGATGCTAAATTCGTTTGGTTTAACGG 21349 38 100.0 43 ...................................... CAATTATTTCGCCATCCTGAATCTTGATGTAATCACGGCGCAA 21268 38 100.0 35 ...................................... TTCCCCATTTTACTCAAGAGAGATAGAGCATTTAT 21195 38 100.0 35 ...................................... TTCGGGTCTGTCCCCTACCATCAAAACTTCCTCTA 21122 38 100.0 32 ...................................... GAATCAATGAAAATGGATATCAATGGACTAGA 21052 38 100.0 36 ...................................... TTCTTCTTTGATGTGATTGAGTCAGGGGGTAAACTC 20978 38 100.0 34 ...................................... AAATAAATAATTTCATCACCAACTAAGGCACAAT 20906 38 100.0 36 ...................................... TCCTTCGCAATCCCTACCTCTAGCAGTACAACACTA 20832 38 100.0 36 ...................................... TGATAATTAATGATTCATCACACTGAAATCTTAAAG 20758 38 100.0 35 ...................................... ATGATATAAATGTGAGGCAAGGGAGGAAAGCCCAA 20685 38 100.0 42 ...................................... GAGTTGGGAGAAGGAACTAAAACCTCAGCGAGAGTAGTAGGA 20605 38 100.0 35 ...................................... ATAGAGAGCTCTTGACTCTGGAGAGCCAAAGAACG 20532 38 100.0 35 ...................................... AATGGTGAGTTCTGGACTGGTAAAAATTGGGGGAA 20459 38 100.0 36 ...................................... GAAAATTGACGTAAAACTGGAGAGTAAAAGTAAAAA 20385 38 100.0 37 ...................................... AGTAAACGGTTTTAAGTGGCTGCAACTAGACCGCGCA 20310 38 100.0 37 ...................................... AAAAAGTAAAAAGTAAGTAAGGAAAGGCAAGGAAGAT 20235 38 100.0 38 ...................................... AGTGCTAAGGGGAAGGCTTTAAATTCCCAACTTTCCTC 20159 38 100.0 35 ...................................... TAAAAGCTTTTGGCAAGAGAGGTTAAGAGCTTACG 20086 38 100.0 34 ...................................... TAGCCGGGAGTTATAGAGGGATGGAAATTTACGC 20014 38 100.0 35 ...................................... TACTAGACTATAAATATAGGGTAAAGCAAAGGAAA 19941 38 100.0 35 ...................................... AGACGCTTTTTCCAGAACTTCTAATCGTGTTGTAA 19868 38 100.0 37 ...................................... TTCTCAAGATTGTATCTTGTCGCGCTTGATATATTTA 19793 38 100.0 40 ...................................... TTCAGTATTTCTGTTTCGATGTGGGCTAATTCCTTCTCAG 19715 38 100.0 37 ...................................... GAATACTTCAATATCCCCTAACTCAGTTTCTATTGTT 19640 38 100.0 34 ...................................... ACTGCCAAGGAACTTTTAATTAAAAAATTAGAAG 19568 38 100.0 36 ...................................... ACTAAACTCATTATCGTATTGTGGAAAGCCTAAACT 19494 38 100.0 35 ...................................... AAATGGGAATTAACTAAATCCAAAAAAATAGAAAG 19421 38 100.0 36 ...................................... CCCTTGAAATAACCCAAAGCCTTAAATAACTTTTCT 19347 38 100.0 39 ...................................... CCAAGAGCCGCCCCAGCAACACATTCCAGTAAAATCTCA 19270 38 100.0 33 ...................................... AAGAATAAAGTGTCCTTATATTTTTACAAAAAA 19199 38 100.0 33 ...................................... TACAATCTATTAATGATTTAAAATCCAATTTAG 19128 38 97.4 38 T..................................... CAGGTATTGTAGAATCTATGCAAGCAGCTAAATGATTG 19052 38 100.0 37 ...................................... TTTGTGGCTGCCAAGGCCGAAGAAAAAGACGGTGATA 18977 38 100.0 35 ...................................... AGAGATAGTAGCCCGTAATTCATTGACGGGACAAT 18904 38 97.4 36 T..................................... AAAGAGATTGTTACTGATGTTCCCTCACCATCATAA 18830 38 97.4 34 G..................................... TATGCCAACATATTCTGATATTTTCGATAACAAC 18758 38 100.0 37 ...................................... ATAGATAAAATTCTGTTAGTTGAGGAATAAGATGCAG 18683 38 100.0 35 ...................................... TTCACATGGCAGAAGTTCCCGATCTAACAAAAGCC 18610 38 97.4 36 G..................................... CAGTATTTTTTATAGACCCCAAGGATGATCCCAAAG 18536 38 100.0 40 ...................................... ACTTCCCTGACATCTACATTTACACTTTAACAAGTTCACA 18458 38 97.4 34 G..................................... CAATCAGCAAGCTCAAACTGATCTAAAACTAAAA 18386 38 100.0 32 ...................................... TATTTAGTTGCCCAAGAAGTTTCAATAGCGGG 18316 38 97.4 32 G..................................... TAATAATTTGTGAGGTAATCCCCACAAGATTT 18246 38 97.4 37 C..................................... TTAGAAAATTACGACAATAACCCAGACTTACTGGAGA 18171 38 100.0 32 ...................................... CCTGCTTTACCTCTAATTTTTCTAACTGCGCT 18101 38 97.4 34 T..................................... TAAAATCCTTAAACTTAAGTTGCGATCGCAAGAT 18029 38 100.0 37 ...................................... TTAATTACTTAAAGTAGCTTAAAAACCTTTCAACACT 17954 38 97.4 35 T..................................... ATCGGGAAAGCTTACCGACTCAAACCCCATATTAA 17881 38 100.0 34 ...................................... GTACAAGTCCCGTTACCATTAGGCTTATCATAAT 17809 38 97.4 39 T..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAA 17732 38 100.0 36 ...................................... TACCTATTGGAGATTGTAGAAATTTTTGGGAGTGGG 17658 38 97.4 35 T..................................... AATTTGATTACGTTTTAGCACGTTGTAAATATTTG 17585 38 97.4 40 C..................................... TCACAAAAAGTATTCTGAACATCCGCCACAAATAAAGGCA 17507 38 97.4 36 C..................................... GAAGCGGCTATGAATTTGTTAATGGGTGAAGGTTAT 17433 38 97.4 33 G..................................... AATTCAGTAATTCATCAAGATTTTTACTCATGT 17362 38 97.4 33 T..................................... AGCGCAAATAATCTGACCTGACAACGGATAACT 17291 38 97.4 33 T..................................... ATTTTTATGAAACTACACCTGGCCACCAAAATG 17220 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =========================================== ================== 81 38 99.2 36 AATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGACAAACGCCGGACGAAAATCCATAGTATTCTCAAGTCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAACTAAGATCGCGTCTTAATAAGCTGATTAAACCGGAAACTGACAGTGTTCGCTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAGATAGAAAGGGTCGGCGGTGAACAACCCCGTGATCAGACGATTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAATATCTAGGTCTGGAAAAAATGTCTGAAATCATCTCTGTACAAGACTTTGAGCAATTTATGGCGGTTCACCCACCCGCGCCCTTTGCCCAGTATGGGTTTCACGGATTTTACCCCTTGACACTTTTTCGGAAATGGTTTATTATGAGTTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCGAGTCCCCGCC # Right flank : AAAATTAATTTTTACCCAGATAGATTAAACCCTGTGCTATTAAGTCTCCTAAATTAGTTAGCTTTTATTGTAGTTTTAGTTGCTATATATGTCGCTAAATCTGCTCAAAAATCTGAATCGCAAAAATAATTGCCTAATTGCCAAATCCAGATGAAATATTAATAAATTGCCAAGAACCTTATGTAGTCTTAAAATTCCTTTAGGGACAGAAAAGAAGTCTTGGGAGATTTTACCTTTTATTACTTATCTTCCTGCATACTCCTGACAATTTTTGTGACCATTTTTCTAGGAATAAACCGCACACATTTTGACATAATCTTATTCATAAACCCAGGAATAACAATTATTTTTCCCTGAATTAGGGCATTATAACCAATTTGGGCAACAGTTTCGGCATCCATCATATTTTTACCTTTCAGCATTTTAGAATCAGCCATTCCTGTTCTTTCATGAAATGCTGATGCTGTAGAACCTGGACAAAGAACTGTGACGGTGACACC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 905-1111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTP010000131.1 Aphanizomenon flos-aquae FACHB-1416 contig131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ========================================= ================== 905 42 100.0 40 .......................................... TCAGACAATGTACCACAGCGATCGCTCAAATTAACCGCCG 987 42 97.6 41 ......................G................... TCAGACAATTAATCAGCGTCAAATTAACAACATTATCTGCA 1070 42 92.9 0 ...C........................T....C........ | ========== ====== ====== ====== ========================================== ========================================= ================== 3 42 96.8 41 AATACCTCATCCTGTAAATCCTAAAATCCTGGAAATCCTGAT # Left flank : GCTTGTATTCAATTTGCAGCAAAGTTGATGGGGAATCACTACGAAGTGAGAAAAATCGCATGAATGGGTTTTTATTCGATGAAAATCTACCCGTGAAAATTCAATTTACCCCATCTTTACCCATTGTCCATGTTTCCATCTTAGGTGACAGTCCAAGTGATACCCAAATATGGCAGTATGCGAAAGAAAGAAAACTGGTAATTGTTACCAAAGATGCAGATTTTTCTGATCGCATGATGGTTGATTTACTCCCGCCTAAAGTAGTACATCTACGCTTTGGGAATGTGCGAAAACGTCAATTTCACTCACTCCTGTCCAGAGTTTGGCCAGAAATTGAAATTTTAGTGGCTGATCATCAGTTAATTAATGTTTATTTGGATCAGATTGAAGCTTTTAAATAATTAATGTTTGATACTAGAAAGCGATCGCTTAAAATGATAAATCACATCCTGTAAGTTATCAGACAATTGACCACAGCGATCGCTACCAATTAACCACCG # Right flank : TAGCGAAGCGTGGCGTTAGCCATTTCAGACAATTAATGCTACGATAAACAAATAATTACTTGGTATCATATCATGATGATTACTCAAGCACTGGAATTACAACCTAACACATCAGAAGATATCATTTTCCCACCCAGTGACCTATATAGTGATGAACCCCCCGTGGAAACAGAACTACATTTACGACAAATTATTCTCCTCTTTAAATGTTTAGAATGGCTATGGAAGGAGAGAACAGATTTTTATGCTGTCGGAAACCTAAGTATTTACTATAGTCCTCATCAAAAAAAATCAAAAGATGTTAGAGGTCCAGATTTTTTTGTAGTTTTAGGAACAGAACGAAAAACTAGAAAAAGTTGGGTAGTGTGGGAAGAAAATGGCAAATATCCTCATGTCATTGTCGAAATTCTTTCACCAACTACAGCTAAAACTGATAGAGAAATTAAAAAAGAACTTTATCAAGATACTTTCCGTACACCTGATTATTTTTGGTTTGATCC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATACCTCATCCTGTAAATCCTAAAATCCTGGAAATCCTGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2918-1674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTP010000104.1 Aphanizomenon flos-aquae FACHB-1416 contig104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 2917 36 100.0 38 .................................... CAGCTATCAGCCGCTCGGCTACCTCTCCATTAATCTGA 2843 36 100.0 37 .................................... ATACCTTGCTCAAAGGCACGACCATCAGCATAGTTGT 2770 36 100.0 41 .................................... TTGGTAAGCACTAAATGACATACTCAACGGGTTACGATTAC 2693 36 100.0 41 .................................... TTCCCAATCTATGCCTAATTCCATTAAGCATTTGAATTTAA 2616 36 100.0 40 .................................... GATTTAATACTAGATGAATTAATCAACCAATCAATGATAC 2540 36 100.0 37 .................................... GTTACAGGAAGTAATGGTACTAACTTAGGGGGGTTAA 2467 36 100.0 40 .................................... AAATGGGTTTTGTTGGCGGTAAGGTTTTAGAGCCTAGTTG 2391 36 100.0 42 .................................... CAACAGATAACTATCAGTGCCTCAACAGATAACTTTTATTTT 2313 36 100.0 42 .................................... TTTCGTTGACTTATCGGACAATAATTATCCGTCGCTATAACT 2235 36 100.0 34 .................................... TATACTCCAGGTATTCATGATCTTTAAGCATCCA 2165 36 100.0 40 .................................... TTGAGTGAAAAAAGATGTTAATTTTACCGTTAACTGCTTC 2089 36 100.0 36 .................................... ATAACTAATGTTCTATCAAACGTATATTCAATTAAA 2017 36 100.0 42 .................................... TCTAACAGGAACTAAATCAAGGACGTATTTCCTACCACCCAA 1939 36 100.0 41 .................................... GTATATCCGCCGAAACTATAACGGGGTTAAGTTCTAATACC 1862 36 100.0 46 .................................... GATCTAATGTATTTCATGGTTGTCCTCTAATAGAATAAGTAATTAG 1780 36 100.0 35 .................................... CTAAGAATAGACTGAATATTGTTTTCATGTTTACA 1709 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ============================================== ================== 17 36 99.8 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TAAAGAGATTGGTAGGGTTGTAACTTTGGAGGAGGGTTGTTTAATGGGTGGTTTTGGTTCTGCTGTGGCGGAAGCTTTACTTGATGCTGATATTGTTGTACCTGTGAAGCGGATTGGTGTTCCTGATATTTTGGTAGATCATGCTACACCGGATCAATCTTTTGCTGCATTAGGTTTAAGTAGTCCTCAAATTGCCGAAACTGTTTTACAGGCTTTCTTTAGAAAACAGGTTGCTGCTATGGTGTAGTTTTTGTCTGAATGAGGATTTGCAGCGATACAGGATTTAATTATTTTGTATATGTTTGCTGGTCTTGTTTATTTTCCGAAGTTCAGGTAAAATGGCTGTAATATTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGAGTTTTTTTCTTGCTGTCGGTTGGTGGTTTTACTACTTTTTTCCTGACCCTCGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGG # Right flank : AAAAGCACAGATAGTATATTTCCCTGGTCTAATCAAGTACATACCAACTTGTTTCCTGTTCCCTAAAACTAAAAAACCTTATACCTCAAGAACATGAACCAAAAAACCCTTAAAAATCAACAAACCCACAATACCTAGCCACCAAACCAGCTAAAACTTGCAAATCTATCGGTTTAGAAATATACTCATTAACACCAGCAGCCAAACAAATTTCTCGATCTTCCTTCATCGCCCTTGCAGTTTGAGCAATAATCCCTATATGCTGATATTTAGGGTTTTCTCGTAATTGCTGCACCAAAATTAAACCATTAATATCAGGTAAACTCACATCCATTAAAATCACTCTTGGTTCTATTTCCCGCAGACTATTCCACATTTCCACCCCATTTTTTACCCAAATTACCTGATACCCCAATCTTCTTAAATAAATCCCCATTAATTCCCCATTTGCTAAGTCATCTTCCACTAGTAAAACTACTGGTGATAAAGTCATATTATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 28534-32653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTP010000032.1 Aphanizomenon flos-aquae FACHB-1416 contig32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================== ================== 28534 37 100.0 37 ..................................... CCTGCTTGGAAAAATAAATTTCCTTTTGATATGATTT 28608 37 100.0 35 ..................................... AAAAAAGGAATTCTCGATAATCAGAAGCTAAAAGC 28680 37 100.0 35 ..................................... ACAATATGGTGGCATGTCTTCCATTTGTTGTGCAG 28752 37 100.0 35 ..................................... TGTCCACAAAACCCCACAAATTCTTCAATCCCAAA 28824 37 100.0 35 ..................................... TACAGCCAAATTATTTGTTAGAACTGCATAATGGA 28896 37 100.0 33 ..................................... TATTAAAGTCAACAGCAGATAACAAAGAAATTT 28966 37 100.0 36 ..................................... GGAGGCTAAGATGCACTGCCAAGCACTAAACAGGAA 29039 37 100.0 33 ..................................... ACTTGATGGACTCTGAGAAATTTAGAATAGGAT 29109 37 100.0 37 ..................................... TAATTAAGGATGCGATCGCCTCTATCCAAGAGGCTTT 29183 37 100.0 36 ..................................... ATTTCTTTAGAATTTATGGTACAGGATTAGCTAATA 29256 37 100.0 35 ..................................... CGAAAAACCAGCTAAGTACAGGGTCAAGCAGGGGA 29328 37 100.0 38 ..................................... AATTGACTGAACTTTGTAGCTTTCTGAATTTTCAGCAG 29403 37 100.0 40 ..................................... GGCCGAAAATTATAGCAGATATTAGAAGAATGAATAAAAA 29480 37 100.0 34 ..................................... GTCCCGTGAGCAATTCCCGCGTCTTTTGAGAGTA 29551 37 100.0 40 ..................................... CAAAGCTTCATTTAAATTCCTTAGGCTTTGCTCACCGCAA 29628 37 100.0 36 ..................................... TTGCTACAGGCTTCCTTATGTTGGGTGTGGTTCTTT 29701 37 100.0 33 ..................................... CTTATTTAAGTAATGAGTATATTGGCCATTTTT 29771 37 100.0 31 ..................................... ACAGGTAAGTCTGCACCACCTTCTGGTGGGA 29839 37 100.0 35 ..................................... GCAATATTATCCAGAGATCCAGCAAGAAATGAAAA 29911 37 100.0 40 ..................................... ATCAAAAATCAAATCCAAGCTTGCTTACGGGCGATTGCAA 29988 37 100.0 31 ..................................... GGCAAACCTAATAATTTATGCGGGTAAAAAC 30056 37 100.0 34 ..................................... ATAGTCCCTATTAGAGAGGATTGGGAGATGTATA 30127 37 100.0 34 ..................................... GGTAGCATAAATTTCTAGACCTCTATAAGAACCA 30198 37 100.0 37 ..................................... AGAGAACAAAACGATATTATGAAAGCAGCGAAGGAAT 30272 37 100.0 36 ..................................... CTACGGTGAATTTTTGGGGTAAAGACAGAGAGATTT 30345 37 100.0 36 ..................................... CGACATATGAAAAGTATTTTACTTTGCATATCTCAA 30418 37 100.0 36 ..................................... TCGAACAAGATAAATATGCTTCTTGGATTTCAAATC 30491 37 100.0 33 ..................................... TTACTTTTTTTTCTAATTCTGCTGCATTCGCCT 30561 37 100.0 38 ..................................... ACAAGAAAATGTAAAGGAGAAAAGCGATTCTGTTGTTG 30636 37 100.0 35 ..................................... TAAACTGCCTGAAAATACTTATCATTTTAGTAGGC 30708 37 100.0 35 ..................................... CTGCTATTTTTGTTGCTTCTAAGGCTGAAGATAAA 30780 37 100.0 35 ..................................... TTACCAGAGATTGGGAAGAAAACTTCTGATTTAAG 30852 37 100.0 35 ..................................... AGTGCGGAGATTAACGCTACCATGACCCGGCTGGG 30924 37 100.0 35 ..................................... GGGATACACCCTTATTAGGAGCGCTTACCACTGGG 30996 37 100.0 34 ..................................... GGCATTTAGACCTGAAGAAATGACAGAAGAACAT 31067 37 100.0 32 ..................................... CAAATCTGAAAATTTTCAGGGGTGAAAAAATA 31136 37 100.0 36 ..................................... TTTTCTCGAAAAGATGGTAAAAGAATGAAAATGGAA 31209 37 100.0 34 ..................................... AAGAGGGTGGCAAGATGGCATGGATACCTGCAAA 31280 37 100.0 34 ..................................... GAATAAAGTTCGAGGGCAAGGTTAGAGCCCAAAG 31351 37 100.0 40 ..................................... GAAAAATGAGATTTACTACTACCAGGTTTACCGTATACTG 31428 37 100.0 37 ..................................... CAATATACCGACAGACTAAATTTTTAGAGAGCCAATC 31502 37 100.0 34 ..................................... GTTAAATACGCGATCGCTAATTATGACTCTGAAA 31573 37 100.0 36 ..................................... AGATTGTGATTGAACAAATTACCGCAGATGTTTCTA 31646 37 100.0 39 ..................................... TTGAATTTCGCTACTGAAGCTATTAACAAACATTTTGGT 31722 37 100.0 37 ..................................... GTAATTATCTTTTTTCTGTTTATATTTTTGTACCATT 31796 37 100.0 36 ..................................... CGGCATCGAAAGCAATATCTTATTTGTGTGGCGCAA 31869 37 100.0 41 ..................................... TTCCGTCACCGTCAAAGTCGCCACCGCAGTCCTGAGAACCA 31947 37 100.0 38 ..................................... TTAATTCTTCTACGCAAGAGCGATCGCGCATTAACCAG 32022 37 100.0 34 ..................................... AATTCAAAGGATGATCTAATTTCTGGCAAAAGGC 32093 37 100.0 35 ..................................... GAAAGATGGACCAGCTTCGCTGCCGGGATCTTTAA 32165 37 100.0 38 ..................................... TTTTTGTTTCTTTTTACCATTTTAAATCTTTTCTTCCG 32240 37 100.0 35 ..................................... TTCTACTAATCCAGAAGAAAATAAAATGTTCCGCG 32312 37 100.0 34 ..................................... AAGTAAATCAAGTTTTTTAAGTTTAGGAGTAATT 32383 37 100.0 31 ..................................... AACTTGTTATGCTAACCGATATGCCACTTTT 32451 37 100.0 33 ..................................... ATAGTTTTTATGATATTATGGAAAAAATCCCAA 32521 37 100.0 59 ..................................... ATTGAGGATTTAAATATTGAGGATTGAAACGAATTACAATAAATCAAATCAAGCAGATT 32617 37 91.9 0 .............A.....A............C.... | ========== ====== ====== ====== ===================================== =========================================================== ================== 57 37 99.9 36 GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Left flank : GTGTGACTGAACGTGATTTAGAATTGTTTTGGGAAGCTTTAATTAAGGCTTGGGAGTTTGACCGCTCTTCTGCACGGGGTTTTATGGCTTGTCGTGGATTATATGTATTTAGTCATGCCAGTAAATATGGTAATGCTCCTGTACATAAGTTGTTTGATAAGCTGCAAATTAAGTCTAATGTTGATGTACCCCGTAGTTTTGCTGATTATCAGGTGGTGCTTGATGATGAATTTAAACTACCTGATGGTGTGATTTTGACAAGGTTGGATTAAAAATGCGCGGATGGTTAGGTGTTAAGTCGGAATGAGTATGATTAAGCTGGAAACTCTTGCAATGTATGGATTTCAGGACATGGGTAATTTAAAATGCCCGCGCACCTTATGCTGTAAGGGTTACAGCGTTTTTTGCTCTTGCTCTTGGGACTGGAATGGGGTATTATCTGAACACCCGCGCAAATCATTCTGGAAATCTCCTATTTCCAAGGGTTTCCCCGGCCCGCT # Right flank : CAAAATCATGTTTTATCTAAATACCCCCGTCCCTGACAATGATCATACCCCACCAACTCGACGGGGAAAGCATAAAATATTCATTGGAATGGCTCCCGGAGTCGGGAAAACATACAGAATGCTAGAAGAAGCACACCAACTTAAACAAGAAGGTATTGATATTGTAATTGGTGTTTTAGAAACCCATGGACGTAAAGGTACGGCCACAAAAGCCATAGGATTAGAGATAATTCCTAAAAAAACCATTGTTCACAAAAATATCAACCTTCAAGAAATGGACACCGAAGGAATTTTAAAACGCTCCCCTCAACTGGTTTTAATTGATGAATTAGCCCATACAAATACCCCCGGTTCACTTAGAGAAAAACGCTATCAAGATGTAGAATTAATTTTAGCAGCCAGTATAGATGTTTACTCTACAGTCAACATTCAACATTTAGAAAGTTTGAACGATTTAGTAGCAGGAATTACAGGTATCGTAGTCCGAGAACGAATTCCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //